Wall clock time and date at job start Tue Mar 31 2020 01:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 116.99905 * 2 1 4 4 O 1.20824 * 119.99938 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99961 * 179.97438 * 3 2 1 6 6 O 1.42905 * 109.46774 * 180.02562 * 5 3 2 7 7 C 1.35715 * 116.99787 * 180.02562 * 6 5 3 8 8 C 1.39010 * 119.90807 * 0.24938 * 7 6 5 9 9 C 1.37684 * 120.09833 * 180.21238 * 8 7 6 10 10 C 1.39803 * 119.90245 * 359.51115 * 9 8 7 11 11 C 1.47490 * 120.09492 * 180.27504 * 10 9 8 12 12 O 1.21627 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00229 * 180.02562 * 11 10 9 14 14 C 1.36902 * 120.00440 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99706 * 359.97438 * 14 13 11 16 16 C 1.39017 * 120.00444 * 180.02562 * 14 13 11 17 17 N 1.31378 * 120.00220 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99913 * 359.97438 * 16 14 13 19 19 H 1.48510 * 109.46996 * 90.00270 * 18 16 14 20 20 H 1.48493 * 109.47564 * 210.00397 * 18 16 14 21 21 H 1.48500 * 109.47220 * 330.00533 * 18 16 14 22 22 C 1.39794 * 119.81143 * 0.26069 * 10 9 8 23 23 C 1.37684 * 119.90589 * 359.97438 * 22 10 9 24 24 H 1.08994 * 109.47400 * 300.00200 * 1 2 3 25 25 H 1.09001 * 109.47082 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.46923 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46880 * 60.00397 * 5 3 2 28 28 H 1.08998 * 109.47195 * 300.00077 * 5 3 2 29 29 H 1.08004 * 119.95340 * 359.97438 * 8 7 6 30 30 H 1.08002 * 120.05316 * 179.79646 * 9 8 7 31 31 H 0.97004 * 120.00078 * 359.97438 * 13 11 10 32 32 H 0.97005 * 120.00430 * 179.97438 * 17 16 14 33 33 H 1.08001 * 120.05026 * 180.02562 * 22 10 9 34 34 H 1.08000 * 119.95455 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9713 2.6454 0.0011 7 6 5.3056 2.8934 0.0011 8 6 6.2073 1.8354 -0.0046 9 6 7.5618 2.0825 -0.0002 10 6 8.0299 3.3998 -0.0003 11 6 9.4800 3.6694 -0.0017 12 8 10.2704 2.7450 -0.0032 13 7 9.9292 4.9401 -0.0013 14 6 11.2751 5.1904 -0.0031 15 1 11.9770 4.3695 -0.0045 16 6 11.7385 6.5010 -0.0022 17 7 13.0302 6.7412 -0.0045 18 14 10.5246 7.9208 0.0009 19 1 10.2047 8.2955 1.4019 20 1 11.1235 9.0858 -0.6986 21 1 9.2805 7.5099 -0.6980 22 6 7.1197 4.4609 0.0006 23 6 5.7669 4.2048 0.0011 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7807 -0.8892 28 1 3.9556 0.7810 0.8908 29 1 5.8449 0.8180 -0.0086 30 1 8.2617 1.2600 -0.0013 31 1 9.2988 5.6774 -0.0005 32 1 13.3535 7.6557 -0.0042 33 1 7.4771 5.4800 0.0001 34 1 5.0630 5.0239 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522887464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:33 Heat of formation + Delta-G solvation = -120.125987 kcal Electronic energy + Delta-G solvation = -20319.418467 eV Core-core repulsion = 16797.613404 eV Total energy + Delta-G solvation = -3521.805063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03688 -40.07666 -38.66886 -37.05381 -36.50297 -34.15137 -31.93883 -31.18018 -30.48349 -29.38414 -27.36996 -25.23577 -23.00035 -22.53167 -21.35358 -19.58439 -18.93175 -18.57563 -17.60895 -17.32233 -17.27428 -16.34174 -15.81461 -15.50005 -15.05260 -14.50019 -14.06916 -13.87966 -13.79906 -13.61196 -13.37874 -13.12391 -12.75556 -12.49821 -12.49085 -12.40598 -11.93854 -11.36522 -11.28252 -11.09944 -10.98968 -10.71611 -10.64098 -10.06893 -9.69061 -8.97234 -8.67234 -8.31210 -8.12556 -6.45497 -3.89885 1.18423 1.46133 1.70991 1.73915 2.96793 3.01272 3.09466 3.26539 3.45455 3.99786 4.20762 4.34444 4.53568 4.54655 4.57003 4.65805 4.74958 4.85746 4.91165 5.07281 5.22053 5.36908 5.44866 5.62297 5.69425 5.83628 6.10484 6.30084 6.42837 6.66487 6.68475 7.19972 7.29501 7.45362 8.04298 8.47713 8.82608 9.29433 9.74286 10.66341 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.041816 B = 0.003081 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.431584 B = 9084.974905 C = 9733.958940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.464 3.536 4 O -0.483 6.483 5 C 0.068 3.932 6 O -0.296 6.296 7 C 0.122 3.878 8 C -0.212 4.212 9 C -0.034 4.034 10 C -0.127 4.127 11 C 0.479 3.521 12 O -0.581 6.581 13 N -0.571 5.571 14 C -0.300 4.300 15 H 0.124 0.876 16 C 0.043 3.957 17 N -0.867 5.867 18 Si 0.877 3.123 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.267 1.267 22 C -0.069 4.069 23 C -0.145 4.145 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.372 0.628 32 H 0.277 0.723 33 H 0.130 0.870 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.315 -9.775 0.035 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.368 6.368 5 C -0.008 4.008 6 O -0.210 6.210 7 C 0.077 3.923 8 C -0.231 4.231 9 C -0.054 4.054 10 C -0.131 4.131 11 C 0.267 3.733 12 O -0.466 6.466 13 N -0.208 5.208 14 C -0.428 4.428 15 H 0.142 0.858 16 C -0.162 4.162 17 N -0.506 5.506 18 Si 0.703 3.297 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.192 1.192 22 C -0.088 4.088 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.206 0.794 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.958 -9.755 0.034 24.944 hybrid contribution -0.935 1.146 -0.018 1.480 sum -23.893 -8.609 0.016 25.397 Atomic orbital electron populations 1.23338 0.75301 1.04054 1.02918 1.86448 1.24080 1.32405 1.84403 1.23053 0.91089 0.81906 0.73499 1.90730 1.66680 1.36187 1.43246 1.21848 0.88626 0.84565 1.05755 1.86001 1.21465 1.24192 1.89343 1.19035 0.80726 0.94402 0.98104 1.21144 0.93848 0.97980 1.10079 1.21027 0.94212 0.96604 0.93520 1.20298 0.94583 0.93755 1.04450 1.17490 0.86765 0.83492 0.85506 1.90641 1.56577 1.43318 1.56109 1.42211 1.08060 1.05989 1.64528 1.19537 0.80999 0.95139 1.47171 0.85843 1.25115 0.96209 0.97616 0.97268 1.69603 1.12224 1.21505 1.47255 0.86694 0.80995 0.82737 0.79279 1.19178 1.19753 1.19230 1.21175 0.91842 0.99029 0.96802 1.20247 0.95513 0.93948 1.06652 0.91592 0.91600 0.87623 0.87365 0.87364 0.85201 0.84294 0.79420 0.91240 0.85267 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.86 10.57 -39.27 -0.41 -3.28 16 3 C 0.46 4.65 8.03 36.01 0.29 4.94 16 4 O -0.48 -6.57 16.25 -25.48 -0.41 -6.98 16 5 C 0.07 0.59 5.33 36.01 0.19 0.78 16 6 O -0.30 -3.72 9.66 -38.80 -0.37 -4.09 16 7 C 0.12 1.63 6.70 -39.01 -0.26 1.37 16 8 C -0.21 -2.69 9.01 -39.50 -0.36 -3.04 16 9 C -0.03 -0.55 9.59 -39.20 -0.38 -0.92 16 10 C -0.13 -2.36 5.88 -104.96 -0.62 -2.98 16 11 C 0.48 11.35 7.71 -12.49 -0.10 11.25 16 12 O -0.58 -15.91 15.91 5.25 0.08 -15.82 16 13 N -0.57 -13.82 5.03 -11.94 -0.06 -13.88 16 14 C -0.30 -8.40 10.16 -15.00 -0.15 -8.55 16 15 H 0.12 3.92 7.38 -52.48 -0.39 3.54 16 16 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 17 N -0.87 -24.70 13.95 55.50 0.77 -23.93 16 18 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 22 C -0.07 -1.10 9.53 -39.20 -0.37 -1.47 16 23 C -0.15 -2.04 9.97 -39.50 -0.39 -2.43 16 24 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 25 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.11 0.69 7.64 -51.93 -0.40 0.29 16 28 H 0.11 0.69 7.66 -51.93 -0.40 0.29 16 29 H 0.13 1.17 6.28 -52.48 -0.33 0.84 16 30 H 0.14 2.23 7.64 -52.49 -0.40 1.83 16 31 H 0.37 7.88 3.78 -40.82 -0.15 7.73 16 32 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.13 1.92 6.39 -52.49 -0.34 1.59 16 34 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -34.55 305.35 -4.95 -39.50 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.26 Total: 8.39 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.17 Total: 1.27 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.71 Total: -37.81 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.12 Total: -30.18 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.55 -4.95 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522887464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.626 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds