Wall clock time and date at job start Tue Mar 31 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99814 * 2 1 4 4 C 1.52995 * 109.46834 * 179.97438 * 3 2 1 5 5 O 1.42899 * 113.41796 * 313.20222 * 4 3 2 6 6 C 1.53503 * 114.20769 * 179.97438 * 4 3 2 7 7 N 1.47066 * 87.98596 * 220.34643 * 6 4 3 8 8 S 1.65595 * 136.05400 * 207.08469 * 7 6 4 9 9 O 1.42104 * 104.27451 * 206.07284 * 8 7 6 10 10 O 1.42096 * 104.28087 * 333.92744 * 8 7 6 11 11 C 1.81400 * 104.45257 * 90.00229 * 8 7 6 12 12 C 1.52992 * 109.47139 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47158 * 180.02562 * 12 11 8 14 14 H 1.08008 * 119.99852 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00251 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00057 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46777 * 120.00159 * 17 15 13 20 20 H 1.48494 * 109.47414 * 240.00247 * 17 15 13 21 21 C 1.47060 * 87.88579 * 27.11915 * 7 6 4 22 22 H 1.08998 * 109.47334 * 300.00758 * 1 2 3 23 23 H 1.09008 * 109.46413 * 60.00539 * 1 2 3 24 24 H 1.09000 * 109.46873 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46988 * 59.99813 * 3 2 1 26 26 H 1.08998 * 109.47275 * 299.99603 * 3 2 1 27 27 H 0.96694 * 114.00198 * 46.79736 * 5 4 3 28 28 H 1.09000 * 113.46355 * 105.56595 * 6 4 3 29 29 H 1.09003 * 113.46309 * 335.13041 * 6 4 3 30 30 H 1.09000 * 109.46890 * 300.00019 * 11 8 7 31 31 H 1.08997 * 109.47096 * 59.99428 * 11 8 7 32 32 H 1.09000 * 109.47302 * 299.99836 * 12 11 8 33 33 H 1.08997 * 109.47538 * 59.99767 * 12 11 8 34 34 H 0.96998 * 120.00136 * 179.97438 * 16 15 13 35 35 H 1.09006 * 113.47077 * 87.66003 * 21 7 6 36 36 H 1.09003 * 113.47044 * 218.03568 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 4.0303 0.2451 0.9569 6 6 4.2735 2.5306 0.0001 7 7 5.2312 1.9462 -0.9507 8 16 6.8201 2.1931 -1.3462 9 8 6.9188 1.7510 -2.6931 10 8 7.0603 3.5505 -1.0013 11 6 7.7388 1.0839 -0.2433 12 6 9.2381 1.2211 -0.5154 13 6 10.0013 0.2992 0.4004 14 1 9.4700 -0.3221 1.1063 15 6 11.3776 0.2488 0.3372 16 7 12.0246 1.0057 -0.5220 17 14 12.3236 -0.8934 1.4729 18 1 11.3697 -1.6318 2.3391 19 1 13.1063 -1.8607 0.6623 20 1 13.2469 -0.0963 2.3199 21 6 4.1565 1.0466 -1.3963 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.5634 -0.6016 0.9543 28 1 4.7170 2.7828 0.9633 29 1 3.6868 3.3471 -0.4212 30 1 7.5316 1.3491 0.7935 31 1 7.4298 0.0544 -0.4237 32 1 9.4450 0.9557 -1.5522 33 1 9.5474 2.2506 -0.3353 34 1 12.9929 0.9705 -0.5662 35 1 3.5387 1.4677 -2.1895 36 1 4.5007 0.0371 -1.6215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563434592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:48 Heat of formation + Delta-G solvation = -128.437237 kcal Electronic energy + Delta-G solvation = -20282.315612 eV Core-core repulsion = 16895.594097 eV Total energy + Delta-G solvation = -3386.721514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31353 -37.81246 -36.53049 -35.41624 -35.23654 -33.83628 -31.10001 -30.03364 -27.11184 -26.22363 -25.56789 -24.91793 -21.56493 -20.49445 -18.58570 -17.51516 -17.29995 -16.92741 -16.46760 -16.28632 -15.70773 -15.51271 -14.91257 -14.55076 -14.29795 -14.13050 -13.97842 -13.34394 -13.19180 -12.71617 -12.48393 -12.14535 -11.81113 -11.70172 -11.68201 -11.57214 -11.50906 -11.05248 -10.91153 -10.76835 -10.37883 -10.33210 -10.25057 -9.97480 -9.69663 -9.30086 -8.83203 -8.46839 -6.08640 -4.13668 0.74808 2.97236 3.22389 3.28526 3.35493 3.39876 3.69465 4.10748 4.33480 4.42640 4.46501 4.53017 4.71807 4.92378 4.95371 5.04914 5.13435 5.26566 5.27185 5.29112 5.39431 5.50241 5.60906 5.68430 5.82507 6.10735 6.40434 6.57465 6.63497 7.34697 7.40372 7.51287 7.85354 8.22308 8.90172 9.50829 11.02553 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.004230 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.925258 B = 6617.498222 C = 7370.363522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.045 3.955 4 C 0.097 3.903 5 O -0.524 6.524 6 C 0.143 3.857 7 N -1.041 6.041 8 S 2.615 3.385 9 O -0.963 6.963 10 O -0.963 6.963 11 C -0.578 4.578 12 C 0.026 3.974 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.892 5.892 17 Si 0.901 3.099 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.106 3.894 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.388 0.612 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.196 -0.423 1.573 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.033 4.033 4 C 0.053 3.947 5 O -0.330 6.330 6 C 0.017 3.983 7 N -0.877 5.877 8 S 2.716 3.284 9 O -0.953 6.953 10 O -0.954 6.954 11 C -0.712 4.712 12 C -0.013 4.013 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.530 5.530 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.020 4.020 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.237 0.763 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.974 0.616 0.880 22.999 hybrid contribution 0.009 -1.237 0.862 1.508 sum -22.965 -0.621 1.742 23.039 Atomic orbital electron populations 1.22763 0.80326 1.03025 1.00148 1.87778 1.20329 1.27475 1.95504 1.23090 0.92935 0.85579 1.01704 1.22655 0.89349 0.92571 0.90142 1.86494 1.61381 1.27811 1.57340 1.22432 0.88578 0.93312 0.93987 1.60216 1.24353 1.50411 1.52689 1.05078 0.71545 0.75962 0.75823 1.93530 1.84686 1.83792 1.33329 1.93527 1.83448 1.32904 1.85486 1.30398 1.11974 1.14387 1.14490 1.18994 0.84088 0.99271 0.98916 1.21056 0.91227 1.23421 1.19951 0.91907 1.25078 0.97800 0.95934 0.95767 1.69968 1.08311 1.39099 1.35618 0.86401 0.79817 0.80489 0.80507 1.19597 1.20822 1.20815 1.23131 0.87261 0.95323 0.96323 0.93903 0.93862 0.89399 0.91819 0.91554 0.76251 0.89198 0.88607 0.86086 0.86168 0.94891 0.94877 0.92628 0.89401 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.07 9.85 -48.05 -0.47 -3.54 16 3 C 0.05 0.32 5.69 37.16 0.21 0.53 16 4 C 0.10 0.96 1.84 -90.10 -0.17 0.80 16 5 O -0.52 -5.95 13.56 -48.05 -0.65 -6.60 16 6 C 0.14 1.60 8.12 -8.51 -0.07 1.53 16 7 N -1.04 -15.28 4.10 -125.16 -0.51 -15.80 16 8 S 2.61 50.72 5.96 -107.50 -0.64 50.08 16 9 O -0.96 -21.23 18.07 -57.54 -1.04 -22.27 16 10 O -0.96 -21.13 18.07 -57.54 -1.04 -22.17 16 11 C -0.58 -11.98 6.12 37.15 0.23 -11.75 16 12 C 0.03 0.70 4.98 -27.89 -0.14 0.57 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.11 1.22 8.11 -8.51 -0.07 1.15 16 22 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16 27 H 0.39 3.31 8.23 45.56 0.38 3.69 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.12 2.33 8.14 -51.92 -0.42 1.91 16 31 H 0.12 2.30 8.14 -51.93 -0.42 1.88 16 32 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -37.14 323.81 -7.70 -44.84 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.64 Total: -0.32 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 0.70 Total: -19.44 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.22 Total: -42.13 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -3.20 Total: -54.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.64 Total: 50.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.14 -7.70 -44.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563434592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.593 kcal (2) G-P(sol) polarization free energy of solvation -37.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds