Wall clock time and date at job start Tue Mar 31 2020 00:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42903 * 109.46726 * 239.99756 * 2 1 3 5 5 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 6 6 H 1.09000 * 109.51366 * 59.89073 * 5 2 1 7 7 C 1.53287 * 109.51396 * 179.97438 * 5 2 1 8 8 N 1.47148 * 108.38507 * 172.22569 * 7 5 2 9 9 S 1.65606 * 120.98584 * 129.48537 * 8 7 5 10 10 O 1.42096 * 104.27751 * 206.07096 * 9 8 7 11 11 O 1.42111 * 104.27388 * 333.92794 * 9 8 7 12 12 C 1.81400 * 104.45038 * 89.99757 * 9 8 7 13 13 C 1.50696 * 109.47071 * 180.02562 * 12 9 8 14 14 H 1.07997 * 120.00253 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00007 * 179.97438 * 13 12 9 16 16 N 1.31513 * 119.99939 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00006 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47246 * 89.99190 * 17 15 13 19 19 H 1.48495 * 109.47151 * 209.99312 * 17 15 13 20 20 H 1.48505 * 109.46925 * 329.99434 * 17 15 13 21 21 C 1.47154 * 118.03827 * 309.46279 * 8 7 5 22 22 C 1.53297 * 108.38321 * 50.52994 * 21 8 7 23 23 O 1.42959 * 109.22511 * 307.70653 * 22 21 8 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 0.96696 * 114.00096 * 60.00466 * 4 2 1 28 28 H 1.09005 * 109.68177 * 291.94839 * 7 5 2 29 29 H 1.09003 * 109.68845 * 52.46259 * 7 5 2 30 30 H 1.09000 * 109.47063 * 300.00059 * 12 9 8 31 31 H 1.08997 * 109.47279 * 59.99888 * 12 9 8 32 32 H 0.97005 * 119.99595 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.68693 * 170.25879 * 21 8 7 34 34 H 1.09008 * 109.67702 * 290.81201 * 21 8 7 35 35 H 1.09002 * 109.50517 * 67.62621 * 22 21 8 36 36 H 1.08997 * 109.51348 * 187.72120 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6755 -1.7485 1.2509 7 6 3.5729 -0.7224 1.2499 8 7 4.0361 -1.2508 2.5428 9 16 5.1608 -2.4642 2.6143 10 8 4.9049 -3.1065 3.8557 11 8 5.0054 -3.1589 1.3843 12 6 6.7556 -1.6011 2.6608 13 6 7.8718 -2.6114 2.7270 14 1 7.6446 -3.6671 2.7394 15 6 9.1832 -2.1880 2.7708 16 7 10.1573 -3.0696 2.8291 17 14 9.5763 -0.3619 2.7486 18 1 9.6243 0.1511 4.1414 19 1 10.8929 -0.1469 2.0963 20 1 8.5241 0.3618 1.9906 21 6 3.4708 -0.6688 3.7704 22 6 1.9428 -0.6701 3.6469 23 8 1.5694 -0.0442 2.4171 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7210 -0.2702 -1.9979 28 1 3.9399 -1.3554 0.4419 29 1 3.9409 0.2947 1.1153 30 1 6.8672 -0.9953 1.7616 31 1 6.7949 -0.9575 3.5396 32 1 11.0799 -2.7717 2.8602 33 1 3.7701 -1.2661 4.6316 34 1 3.8285 0.3540 3.8902 35 1 1.5777 -1.6971 3.6584 36 1 1.5096 -0.1204 4.4825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563435515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:41 Heat of formation + Delta-G solvation = -195.985836 kcal Electronic energy + Delta-G solvation = -21052.807364 eV Core-core repulsion = 17663.156723 eV Total energy + Delta-G solvation = -3389.650641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62709 -38.21279 -37.99371 -36.96089 -35.85162 -35.35421 -33.14449 -31.80201 -30.72806 -28.16875 -25.38512 -25.07568 -23.14647 -21.88350 -19.88107 -19.58329 -18.61460 -18.42848 -17.53993 -17.36443 -16.65959 -16.50661 -16.14543 -16.02741 -15.82296 -15.16050 -14.86944 -14.71272 -14.46260 -14.30432 -13.59289 -13.53256 -13.38229 -13.24460 -13.14054 -12.80014 -12.66112 -12.64438 -12.43966 -12.28350 -12.04059 -11.88290 -11.52220 -11.27721 -11.22515 -10.95762 -10.92063 -9.79188 -8.47048 -6.64525 -0.62585 1.32023 1.35267 1.46744 1.78713 2.26040 2.37897 2.83908 2.93131 3.23446 3.61198 3.65703 3.78240 3.93559 4.03215 4.12985 4.27725 4.32090 4.40142 4.47045 4.51037 4.52124 4.68495 4.77757 4.91923 4.93812 5.01910 5.08954 5.18711 5.32714 5.52697 5.78841 6.07027 6.39834 6.93305 7.04457 8.68366 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.005393 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.243506 B = 5190.512524 C = 5414.941824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 H 0.082 0.918 4 O -0.581 6.581 5 C 0.087 3.913 6 H 0.050 0.950 7 C 0.089 3.911 8 N -1.008 6.008 9 S 2.621 3.379 10 O -0.995 6.995 11 O -0.999 6.999 12 C -0.478 4.478 13 C -0.560 4.560 14 H 0.037 0.963 15 C 0.025 3.975 16 N -0.932 5.932 17 Si 0.955 3.045 18 H -0.254 1.254 19 H -0.276 1.276 20 H -0.234 1.234 21 C 0.070 3.930 22 C 0.054 3.946 23 O -0.370 6.370 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.403 0.597 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.277 0.723 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.131 14.405 -3.081 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.054 3.946 3 H 0.100 0.900 4 O -0.391 6.391 5 C 0.027 3.973 6 H 0.068 0.932 7 C -0.036 4.036 8 N -0.847 5.847 9 S 2.721 3.279 10 O -0.986 6.986 11 O -0.990 6.990 12 C -0.612 4.612 13 C -0.598 4.598 14 H 0.055 0.945 15 C -0.177 4.177 16 N -0.569 5.569 17 Si 0.774 3.226 18 H -0.179 1.179 19 H -0.201 1.201 20 H -0.156 1.156 21 C -0.054 4.054 22 C -0.024 4.024 23 O -0.289 6.289 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.254 0.746 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.004 13.202 -2.622 23.288 hybrid contribution 1.022 0.422 -0.303 1.146 sum -17.982 13.624 -2.925 22.749 Atomic orbital electron populations 1.22374 0.94311 1.02561 1.03866 1.21465 0.94323 0.95242 0.83552 0.89990 1.86467 1.77454 1.58398 1.16811 1.22143 0.92275 0.96077 0.86812 0.93155 1.22202 0.95823 1.01353 0.84249 1.57832 1.57163 1.56900 1.12798 1.04456 0.76199 0.74718 0.72568 1.93431 1.84956 1.73832 1.46346 1.93447 1.86351 1.71977 1.47186 1.28272 1.16186 1.09045 1.07684 1.20356 0.91529 0.91795 1.56129 0.94483 1.26058 0.95091 1.04524 0.92010 1.70024 1.00729 1.37322 1.48860 0.85599 0.78973 0.77638 0.80341 1.17865 1.20132 1.15650 1.22469 0.95798 1.01133 0.86049 1.23103 0.93051 0.99011 0.87211 1.87802 1.75616 1.52092 1.13364 0.90012 0.93023 0.90702 0.74559 0.89128 0.88641 0.87756 0.87485 0.91367 0.88128 0.87997 0.93387 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.39 71.98 0.68 -1.84 16 2 C 0.11 2.08 3.37 30.60 0.10 2.18 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 O -0.58 -11.42 12.81 -148.98 -1.91 -13.33 16 5 C 0.09 2.13 2.57 30.69 0.08 2.21 16 6 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 7 C 0.09 2.51 5.70 86.35 0.49 3.00 16 8 N -1.01 -31.71 3.27 -511.62 -1.67 -33.39 16 9 S 2.62 112.07 5.39 -56.49 -0.30 111.77 16 10 O -1.00 -46.91 16.62 -127.65 -2.12 -49.04 16 11 O -1.00 -49.05 16.62 -127.65 -2.12 -51.17 16 12 C -0.48 -21.44 5.00 71.23 0.36 -21.09 16 13 C -0.56 -32.54 9.68 25.60 0.25 -32.30 16 14 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 15 C 0.02 1.42 5.47 84.66 0.46 1.88 16 16 N -0.93 -57.44 13.96 21.45 0.30 -57.14 16 17 Si 0.95 41.15 27.47 68.60 1.88 43.04 16 18 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.23 -8.89 6.54 99.48 0.65 -8.24 16 21 C 0.07 1.69 6.67 86.35 0.58 2.26 16 22 C 0.05 1.09 6.98 72.08 0.50 1.59 16 23 O -0.37 -8.10 9.72 -148.98 -1.45 -9.55 16 24 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 1.10 7.69 -2.39 -0.02 1.08 16 27 H 0.40 3.77 9.08 -74.06 -0.67 3.09 16 28 H 0.09 2.96 6.68 -2.38 -0.02 2.94 16 29 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.10 4.24 7.20 -2.39 -0.02 4.23 16 31 H 0.11 4.19 7.57 -2.39 -0.02 4.17 16 32 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 33 H 0.10 2.54 6.88 -2.39 -0.02 2.52 16 34 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -79.69 307.96 -3.54 -83.23 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.36 Total: 17.68 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 3.50 Total: -42.10 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -1.37 Total: -90.53 kcal Atomic # 8 Polarization: -115.48 SS G_CDS: -7.60 Total: -123.08 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.04 kcal Atomic # 16 Polarization: 112.07 SS G_CDS: -0.30 Total: 111.77 kcal Total: -79.69 -3.54 -83.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563435515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.759 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds