Wall clock time and date at job start Tue Mar 31 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.70289 * 2 1 4 4 C 1.52878 * 109.52300 * 120.35734 * 2 1 3 5 5 O 1.42956 * 109.29761 * 67.70349 * 4 2 1 6 6 C 1.42969 * 114.17079 * 62.44267 * 5 4 2 7 7 H 1.08998 * 109.54858 * 57.36824 * 6 5 4 8 8 C 1.52998 * 109.51696 * 177.49643 * 6 5 4 9 9 O 1.42903 * 109.46692 * 294.75114 * 8 6 5 10 10 C 1.53296 * 109.22249 * 297.42476 * 6 5 4 11 11 N 1.47147 * 109.67900 * 239.46589 * 2 1 3 12 12 S 1.65600 * 120.98493 * 110.83483 * 11 2 1 13 13 O 1.42101 * 104.28039 * 153.64378 * 12 11 2 14 14 O 1.42099 * 104.27607 * 25.78385 * 12 11 2 15 15 C 1.81400 * 104.44771 * 269.71413 * 12 11 2 16 16 C 1.50699 * 109.46814 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 12 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.09003 * 109.47426 * 180.53776 * 1 2 3 25 25 H 1.09002 * 109.47538 * 300.53535 * 1 2 3 26 26 H 1.08999 * 109.47397 * 60.53745 * 1 2 3 27 27 H 1.08990 * 109.58419 * 307.68921 * 4 2 1 28 28 H 1.09003 * 109.40722 * 187.60858 * 4 2 1 29 29 H 1.09005 * 109.46829 * 54.74371 * 8 6 5 30 30 H 1.08995 * 109.47502 * 174.74803 * 8 6 5 31 31 H 0.96708 * 113.99480 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.67817 * 292.57593 * 10 6 5 33 33 H 1.08997 * 109.71405 * 172.04079 * 10 6 5 34 34 H 1.09004 * 109.47155 * 59.99954 * 15 12 11 35 35 H 1.08997 * 109.47545 * 299.99624 * 15 12 11 36 36 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0409 -0.7282 1.2433 5 8 1.7163 -2.1169 1.1442 6 6 2.3301 -2.7841 0.0388 7 1 3.4128 -2.6753 0.1026 8 6 1.9630 -4.2691 0.0702 9 8 2.5305 -4.8755 1.2332 10 6 1.8290 -2.1603 -1.2687 11 7 2.0255 -0.7039 -1.1934 12 16 2.7881 0.1175 -2.4125 13 8 3.6310 -0.8543 -3.0161 14 8 3.3324 1.2649 -1.7749 15 6 1.4516 0.5918 -3.5437 16 6 2.0268 1.3557 -4.7084 17 1 3.0900 1.5374 -4.7630 18 6 1.1957 1.8228 -5.7045 19 7 1.6977 2.4890 -6.7212 20 14 -0.6433 1.5092 -5.6099 21 1 -1.2990 2.6253 -4.8820 22 1 -0.8918 0.2347 -4.8892 23 1 -1.2013 1.4183 -6.9830 24 1 -0.3634 -1.0276 0.0096 25 1 -0.3634 0.5221 0.8851 26 1 -0.3634 0.5054 -0.8947 27 1 1.5713 -0.3071 2.1321 28 1 3.1224 -0.6112 1.3128 29 1 0.8785 -4.3747 0.0979 30 1 2.3532 -4.7588 -0.8220 31 1 2.3381 -5.8194 1.3181 32 1 0.7696 -2.3815 -1.3986 33 1 2.3939 -2.5640 -2.1089 34 1 0.7346 1.2205 -3.0157 35 1 0.9495 -0.3041 -3.9088 36 1 1.1130 2.8179 -7.4218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576837289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:20 Heat of formation + Delta-G solvation = -164.588678 kcal Electronic energy + Delta-G solvation = -21268.871801 eV Core-core repulsion = 17880.582643 eV Total energy + Delta-G solvation = -3388.289159 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69283 -36.88445 -36.41334 -35.24638 -34.87087 -33.29790 -32.72075 -29.83788 -29.28409 -26.24198 -25.40652 -23.11738 -22.36033 -20.34986 -18.45772 -17.76832 -17.49080 -16.82648 -16.71706 -15.85156 -15.60109 -15.32420 -14.96205 -14.54213 -14.19628 -14.07131 -13.67920 -13.07087 -13.03590 -12.76234 -12.62067 -12.28473 -11.89245 -11.71033 -11.62033 -11.43694 -11.36305 -11.12590 -11.00007 -10.90820 -10.56906 -10.34851 -10.19134 -10.03385 -9.93879 -9.54994 -8.88306 -8.60415 -6.36310 -4.45823 1.00426 3.10108 3.16784 3.17685 3.20656 3.62912 3.96709 4.17159 4.57591 4.70798 4.74475 4.81212 4.94042 4.96700 5.06289 5.12188 5.24290 5.31691 5.39140 5.46679 5.57099 5.60276 5.66476 5.84530 5.88246 6.14823 6.18124 6.22786 6.37048 6.74448 7.12682 7.14427 7.43779 7.95381 8.54932 9.18681 10.74733 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.005612 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.371921 B = 4988.259410 C = 5039.579155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 H 0.113 0.887 4 C 0.059 3.941 5 O -0.367 6.367 6 C 0.081 3.919 7 H 0.071 0.929 8 C 0.086 3.914 9 O -0.566 6.566 10 C 0.092 3.908 11 N -1.008 6.008 12 S 2.602 3.398 13 O -0.968 6.968 14 O -0.967 6.967 15 C -0.469 4.469 16 C -0.535 4.535 17 H 0.085 0.915 18 C 0.089 3.911 19 N -0.879 5.879 20 Si 0.884 3.116 21 H -0.271 1.271 22 H -0.263 1.263 23 H -0.281 1.281 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.378 0.622 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 -11.325 14.120 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 H 0.130 0.870 4 C -0.020 4.020 5 O -0.285 6.285 6 C 0.021 3.979 7 H 0.089 0.911 8 C 0.007 3.993 9 O -0.371 6.371 10 C -0.034 4.034 11 N -0.843 5.843 12 S 2.702 3.298 13 O -0.959 6.959 14 O -0.958 6.958 15 C -0.603 4.603 16 C -0.574 4.574 17 H 0.103 0.897 18 C -0.118 4.118 19 N -0.515 5.515 20 Si 0.710 3.290 21 H -0.196 1.196 22 H -0.188 1.188 23 H -0.206 1.206 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.225 0.775 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.651 -10.553 14.130 18.010 hybrid contribution -1.716 -0.431 -0.626 1.877 sum -5.366 -10.984 13.503 18.215 Atomic orbital electron populations 1.22111 0.94644 1.02866 1.02368 1.21596 0.95185 0.97629 0.85467 0.86963 1.22830 1.00079 0.81705 0.97335 1.87944 1.71604 1.21484 1.47502 1.22382 0.97938 0.90755 0.86792 0.91099 1.22113 0.97734 0.91245 0.88202 1.86541 1.77925 1.27449 1.45170 1.21887 1.02249 0.80649 0.98618 1.58282 1.77149 1.15101 1.33772 1.05374 0.77077 0.73407 0.73924 1.93482 1.64365 1.60658 1.77372 1.93482 1.76930 1.51137 1.74236 1.28251 1.13649 1.06931 1.11499 1.20083 0.96344 1.37023 1.03954 0.89693 1.24895 0.99261 0.93329 0.94268 1.69869 1.36322 1.35038 1.10246 0.86707 0.84720 0.79544 0.78059 1.19590 1.18783 1.20600 0.91698 0.91536 0.92016 0.87817 0.92607 0.92544 0.91643 0.77519 0.90711 0.87615 0.90213 0.89806 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.23 37.16 0.34 -1.55 16 2 C 0.11 1.47 3.25 -67.64 -0.22 1.26 16 3 H 0.11 1.59 6.87 -51.93 -0.36 1.23 16 4 C 0.06 0.73 6.33 37.09 0.23 0.97 16 5 O -0.37 -4.99 9.98 -39.71 -0.40 -5.38 16 6 C 0.08 1.05 3.06 -26.58 -0.08 0.96 16 7 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.09 0.86 6.71 37.16 0.25 1.11 16 9 O -0.57 -5.99 13.63 -39.71 -0.54 -6.53 16 10 C 0.09 1.24 5.57 -3.53 -0.02 1.22 16 11 N -1.01 -15.95 2.97 -106.26 -0.32 -16.26 16 12 S 2.60 53.39 5.39 -107.50 -0.58 52.81 16 13 O -0.97 -21.97 16.62 -57.54 -0.96 -22.93 16 14 O -0.97 -22.05 16.61 -57.54 -0.96 -23.01 16 15 C -0.47 -10.39 5.00 36.00 0.18 -10.21 16 16 C -0.54 -14.85 9.68 -34.44 -0.33 -15.18 16 17 H 0.09 2.55 7.96 -52.49 -0.42 2.14 16 18 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 19 N -0.88 -25.94 13.96 55.43 0.77 -25.16 16 20 Si 0.88 20.23 27.47 -169.99 -4.67 15.56 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.06 0.75 7.24 -51.93 -0.38 0.37 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.38 2.03 9.12 45.56 0.42 2.45 16 32 H 0.07 0.85 7.68 -51.93 -0.40 0.46 16 33 H 0.11 1.43 6.88 -51.93 -0.36 1.07 16 34 H 0.08 1.62 7.57 -51.92 -0.39 1.23 16 35 H 0.08 1.72 7.20 -51.93 -0.37 1.35 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -35.43 307.51 -7.13 -42.57 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.38 Total: 2.75 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 0.26 Total: -19.04 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.46 Total: -41.43 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -2.85 Total: -57.86 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.58 Total: 52.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.43 -7.13 -42.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576837289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.020 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds