Wall clock time and date at job start Tue Mar 31 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.70289 * 2 1 4 4 C 1.52878 * 109.52300 * 120.35734 * 2 1 3 5 5 O 1.42956 * 109.29761 * 67.70349 * 4 2 1 6 6 C 1.42969 * 114.17079 * 62.44267 * 5 4 2 7 7 H 1.08998 * 109.54858 * 57.36824 * 6 5 4 8 8 C 1.52998 * 109.51696 * 177.49643 * 6 5 4 9 9 O 1.42903 * 109.46692 * 294.75114 * 8 6 5 10 10 C 1.53296 * 109.22249 * 297.42476 * 6 5 4 11 11 N 1.47147 * 109.67900 * 239.46589 * 2 1 3 12 12 S 1.65600 * 120.98493 * 110.83483 * 11 2 1 13 13 O 1.42101 * 104.28039 * 153.64378 * 12 11 2 14 14 O 1.42099 * 104.27607 * 25.78385 * 12 11 2 15 15 C 1.81400 * 104.44771 * 269.71413 * 12 11 2 16 16 C 1.50699 * 109.46814 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 12 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.09003 * 109.47426 * 180.53776 * 1 2 3 25 25 H 1.09002 * 109.47538 * 300.53535 * 1 2 3 26 26 H 1.08999 * 109.47397 * 60.53745 * 1 2 3 27 27 H 1.08990 * 109.58419 * 307.68921 * 4 2 1 28 28 H 1.09003 * 109.40722 * 187.60858 * 4 2 1 29 29 H 1.09005 * 109.46829 * 54.74371 * 8 6 5 30 30 H 1.08995 * 109.47502 * 174.74803 * 8 6 5 31 31 H 0.96708 * 113.99480 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.67817 * 292.57593 * 10 6 5 33 33 H 1.08997 * 109.71405 * 172.04079 * 10 6 5 34 34 H 1.09004 * 109.47155 * 59.99954 * 15 12 11 35 35 H 1.08997 * 109.47545 * 299.99624 * 15 12 11 36 36 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0409 -0.7282 1.2433 5 8 1.7163 -2.1169 1.1442 6 6 2.3301 -2.7841 0.0388 7 1 3.4128 -2.6753 0.1026 8 6 1.9630 -4.2691 0.0702 9 8 2.5305 -4.8755 1.2332 10 6 1.8290 -2.1603 -1.2687 11 7 2.0255 -0.7039 -1.1934 12 16 2.7881 0.1175 -2.4125 13 8 3.6310 -0.8543 -3.0161 14 8 3.3324 1.2649 -1.7749 15 6 1.4516 0.5918 -3.5437 16 6 2.0268 1.3557 -4.7084 17 1 3.0900 1.5374 -4.7630 18 6 1.1957 1.8228 -5.7045 19 7 1.6977 2.4890 -6.7212 20 14 -0.6433 1.5092 -5.6099 21 1 -1.2990 2.6253 -4.8820 22 1 -0.8918 0.2347 -4.8892 23 1 -1.2013 1.4183 -6.9830 24 1 -0.3634 -1.0276 0.0096 25 1 -0.3634 0.5221 0.8851 26 1 -0.3634 0.5054 -0.8947 27 1 1.5713 -0.3071 2.1321 28 1 3.1224 -0.6112 1.3128 29 1 0.8785 -4.3747 0.0979 30 1 2.3532 -4.7588 -0.8220 31 1 2.3381 -5.8194 1.3181 32 1 0.7696 -2.3815 -1.3986 33 1 2.3939 -2.5640 -2.1089 34 1 0.7346 1.2205 -3.0157 35 1 0.9495 -0.3041 -3.9088 36 1 1.1130 2.8179 -7.4218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576837289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:20 Heat of formation + Delta-G solvation = -195.794756 kcal Electronic energy + Delta-G solvation = -21270.224999 eV Core-core repulsion = 17880.582643 eV Total energy + Delta-G solvation = -3389.642356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71355 -38.19771 -37.62422 -36.95615 -35.99606 -35.34751 -33.71056 -31.79607 -30.28511 -27.19803 -26.40967 -25.06995 -23.36543 -21.50074 -19.76061 -19.58366 -18.52482 -18.31561 -17.75218 -17.48342 -16.99187 -16.34200 -16.23785 -15.93808 -15.84767 -14.89976 -14.83618 -14.66251 -14.33383 -14.08402 -13.87710 -13.58718 -13.36872 -13.30425 -13.13068 -12.86947 -12.64625 -12.52268 -12.28439 -12.22916 -12.05733 -11.87244 -11.57521 -11.28068 -11.12069 -10.94873 -10.89141 -9.79312 -8.46194 -6.63660 -0.63080 1.33114 1.35884 1.47340 1.77027 2.26660 2.70895 2.84792 2.93371 3.11396 3.37985 3.59956 3.84191 4.03159 4.07724 4.17184 4.28525 4.35141 4.41306 4.47107 4.59327 4.61996 4.63719 4.65821 4.81131 4.93440 4.94691 5.15303 5.23230 5.40152 5.56922 5.79516 6.14231 6.40929 6.95903 7.05366 8.69158 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.005612 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.371921 B = 4988.259410 C = 5039.579155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 H 0.103 0.897 4 C 0.058 3.942 5 O -0.371 6.371 6 C 0.077 3.923 7 H 0.049 0.951 8 C 0.088 3.912 9 O -0.589 6.589 10 C 0.086 3.914 11 N -1.001 6.001 12 S 2.621 3.379 13 O -0.997 6.997 14 O -0.998 6.998 15 C -0.476 4.476 16 C -0.558 4.558 17 H 0.036 0.964 18 C 0.025 3.975 19 N -0.933 5.933 20 Si 0.953 3.047 21 H -0.257 1.257 22 H -0.229 1.229 23 H -0.278 1.278 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.135 0.865 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.400 0.600 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 -13.027 15.853 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.007 4.007 3 H 0.121 0.879 4 C -0.020 4.020 5 O -0.289 6.289 6 C 0.017 3.983 7 H 0.067 0.933 8 C 0.010 3.990 9 O -0.398 6.398 10 C -0.040 4.040 11 N -0.839 5.839 12 S 2.721 3.279 13 O -0.987 6.987 14 O -0.988 6.988 15 C -0.610 4.610 16 C -0.597 4.597 17 H 0.054 0.946 18 C -0.177 4.177 19 N -0.570 5.570 20 Si 0.773 3.227 21 H -0.181 1.181 22 H -0.152 1.152 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.682 -12.275 15.871 21.148 hybrid contribution -0.653 0.078 -1.095 1.278 sum -7.335 -12.197 14.776 20.516 Atomic orbital electron populations 1.22110 0.92467 1.03632 1.03386 1.21889 0.96907 0.97142 0.84749 0.87906 1.22951 0.99735 0.81466 0.97850 1.87947 1.71502 1.21778 1.47706 1.22472 0.96754 0.92786 0.86295 0.93330 1.22131 0.98828 0.89225 0.88833 1.86474 1.78346 1.29526 1.45469 1.22170 1.04096 0.78735 0.98956 1.57877 1.76970 1.16172 1.32904 1.04462 0.76705 0.72741 0.73999 1.93435 1.65525 1.61259 1.78525 1.93434 1.77740 1.52846 1.74796 1.28271 1.14867 1.07558 1.10273 1.20350 0.94663 1.38166 1.06500 0.94553 1.26052 1.05522 0.92650 0.93432 1.70025 1.38784 1.36685 1.11526 0.85617 0.76948 0.81310 0.78791 1.18130 1.15207 1.20301 0.91015 0.89112 0.92441 0.84779 0.93844 0.90738 0.89778 0.74979 0.87708 0.88027 0.87699 0.87346 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.23 71.98 0.66 -2.44 16 2 C 0.10 2.49 3.25 44.83 0.15 2.64 16 3 H 0.10 2.79 6.87 -2.39 -0.02 2.78 16 4 C 0.06 1.32 6.33 71.94 0.46 1.78 16 5 O -0.37 -9.10 9.98 -144.70 -1.44 -10.55 16 6 C 0.08 1.83 3.06 30.69 0.09 1.92 16 7 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 8 C 0.09 1.50 6.71 71.98 0.48 1.99 16 9 O -0.59 -11.05 13.63 -144.70 -1.97 -13.02 16 10 C 0.09 2.10 5.57 86.35 0.48 2.58 16 11 N -1.00 -30.09 2.97 -490.11 -1.46 -31.55 16 12 S 2.62 107.91 5.39 -56.49 -0.30 107.60 16 13 O -1.00 -46.12 16.62 -127.65 -2.12 -48.24 16 14 O -1.00 -46.54 16.61 -127.65 -2.12 -48.66 16 15 C -0.48 -20.55 5.00 71.24 0.36 -20.19 16 16 C -0.56 -31.71 9.68 25.60 0.25 -31.46 16 17 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 18 C 0.03 1.41 5.47 84.65 0.46 1.87 16 19 N -0.93 -56.76 13.96 21.45 0.30 -56.46 16 20 Si 0.95 40.20 27.47 68.60 1.88 42.08 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.23 -8.36 6.54 99.48 0.65 -7.71 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 24 H 0.07 1.33 7.24 -2.39 -0.02 1.32 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.13 2.20 8.13 -2.39 -0.02 2.18 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.40 3.23 9.12 -74.05 -0.68 2.55 16 32 H 0.10 1.97 7.68 -2.39 -0.02 1.95 16 33 H 0.10 2.58 6.88 -2.39 -0.02 2.57 16 34 H 0.11 4.00 7.57 -2.39 -0.02 3.98 16 35 H 0.11 4.14 7.20 -2.39 -0.02 4.12 16 36 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -79.30 307.51 -3.49 -82.79 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.36 Total: 17.32 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 3.39 Total: -41.33 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -1.16 Total: -88.00 kcal Atomic # 8 Polarization: -112.81 SS G_CDS: -7.66 Total: -120.47 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.88 Total: 42.08 kcal Atomic # 16 Polarization: 107.91 SS G_CDS: -0.30 Total: 107.60 kcal Total: -79.30 -3.49 -82.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576837289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.004 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds