Wall clock time and date at job start Tue Mar 31 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.71043 * 2 1 4 4 C 1.53291 * 109.68135 * 239.46001 * 2 1 3 5 5 O 1.42972 * 109.22223 * 187.97696 * 4 2 1 6 6 C 1.42957 * 114.16497 * 62.57888 * 5 4 2 7 7 H 1.09002 * 109.55134 * 57.37569 * 6 5 4 8 8 C 1.52996 * 109.51158 * 177.49361 * 6 5 4 9 9 O 1.42898 * 109.47544 * 294.75095 * 8 6 5 10 10 C 1.53292 * 109.22548 * 297.42014 * 6 5 4 11 11 N 1.47155 * 109.67718 * 120.53453 * 2 1 3 12 12 S 1.65598 * 120.98549 * 350.23928 * 11 2 1 13 13 O 1.42103 * 104.27461 * 39.32110 * 12 11 2 14 14 O 1.42098 * 104.27828 * 167.17988 * 12 11 2 15 15 C 1.81405 * 104.44792 * 283.25250 * 12 11 2 16 16 C 1.50695 * 109.47072 * 179.97438 * 15 12 11 17 17 H 1.08002 * 120.00191 * 359.97438 * 16 15 12 18 18 C 1.37880 * 119.99742 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00225 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99659 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47559 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47469 * 119.99748 * 20 18 16 23 23 H 1.48502 * 109.46854 * 239.99471 * 20 18 16 24 24 H 1.08997 * 109.47224 * 291.59315 * 1 2 3 25 25 H 1.09006 * 109.46703 * 51.58992 * 1 2 3 26 26 H 1.09001 * 109.47266 * 171.58271 * 1 2 3 27 27 H 1.08997 * 109.51551 * 307.90090 * 4 2 1 28 28 H 1.09002 * 109.51616 * 68.00492 * 4 2 1 29 29 H 1.09010 * 109.47080 * 54.74997 * 8 6 5 30 30 H 1.09000 * 109.47340 * 174.74698 * 8 6 5 31 31 H 0.96703 * 113.99981 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.67816 * 172.02398 * 10 6 5 33 33 H 1.08995 * 109.68227 * 292.58139 * 10 6 5 34 34 H 1.09001 * 109.46678 * 300.00352 * 15 12 11 35 35 H 1.09004 * 109.46701 * 59.99689 * 15 12 11 36 36 H 0.96995 * 120.00265 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0462 -0.7334 -1.2431 5 8 3.4636 -0.8912 -1.1419 6 6 3.8859 -1.6895 -0.0337 7 1 3.4217 -2.6738 -0.0953 8 6 5.4082 -1.8398 -0.0628 9 8 5.7917 -2.5805 -1.2231 10 6 3.4638 -1.0051 1.2714 11 7 2.0255 -0.7040 1.1935 12 16 0.9951 -1.1439 2.4129 13 8 -0.1787 -1.5784 1.7402 14 8 1.7574 -2.0403 3.2095 15 6 0.6778 0.3974 3.3154 16 6 -0.2594 0.1236 4.4633 17 1 -0.6277 -0.8775 4.6327 18 6 -0.6475 1.1512 5.2966 19 7 -0.1994 2.3703 5.0900 20 14 -1.8086 0.8116 6.7199 21 1 -2.1642 -0.6301 6.7355 22 1 -1.1438 1.1718 7.9980 23 1 -3.0415 1.6234 6.5573 24 1 -0.3633 0.3782 0.9555 25 1 -0.3633 0.6385 -0.8053 26 1 -0.3634 -1.0166 -0.1504 27 1 1.5746 -1.7138 -1.3095 28 1 1.8066 -0.1530 -2.1341 29 1 5.8702 -0.8529 -0.0926 30 1 5.7383 -2.3686 0.8313 31 1 6.7457 -2.7142 -1.3069 32 1 3.6544 -1.6707 2.1133 33 1 4.0261 -0.0802 1.3994 34 1 1.6178 0.7934 3.6998 35 1 0.2248 1.1257 2.6427 36 1 -0.4721 3.0932 5.6764 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576837291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:24 Heat of formation + Delta-G solvation = -186.741203 kcal Electronic energy + Delta-G solvation = -21267.690253 eV Core-core repulsion = 17878.440489 eV Total energy + Delta-G solvation = -3389.249764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64144 -38.34606 -37.59562 -36.91162 -36.05910 -35.44230 -33.83762 -31.09443 -30.28483 -27.34972 -25.87858 -25.47818 -23.31901 -22.07057 -19.82600 -19.05696 -18.44507 -17.96362 -17.93118 -17.42691 -17.16319 -16.34530 -16.09482 -15.98129 -15.86623 -15.40438 -14.78625 -14.47663 -14.23481 -14.00426 -13.85877 -13.51591 -13.40162 -13.21219 -13.06217 -12.77993 -12.72314 -12.56222 -12.44702 -12.16161 -11.87654 -11.79908 -11.51417 -11.15949 -11.05421 -10.90489 -10.80063 -9.75936 -8.43528 -6.62089 -0.51446 1.36079 1.36876 1.50970 1.79131 2.29457 2.68702 2.89579 2.96163 3.17580 3.43096 3.55073 3.74765 4.00678 4.05984 4.15554 4.26213 4.33889 4.54535 4.56692 4.60527 4.61891 4.65932 4.73291 4.82097 4.90236 5.03294 5.07238 5.30171 5.46633 5.58983 5.70475 6.11695 6.48424 6.95205 7.09942 8.69053 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.005149 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.450219 B = 5436.944321 C = 5704.734848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 H 0.097 0.903 4 C 0.058 3.942 5 O -0.377 6.377 6 C 0.078 3.922 7 H 0.053 0.947 8 C 0.088 3.912 9 O -0.588 6.588 10 C 0.085 3.915 11 N -1.006 6.006 12 S 2.613 3.387 13 O -0.987 6.987 14 O -1.003 7.003 15 C -0.429 4.429 16 C -0.567 4.567 17 H 0.062 0.938 18 C 0.028 3.972 19 N -0.907 5.907 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.266 1.266 24 H 0.046 0.954 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.134 0.866 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.400 0.600 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -3.244 -11.162 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.010 3.990 3 H 0.114 0.886 4 C -0.020 4.020 5 O -0.296 6.296 6 C 0.018 3.982 7 H 0.071 0.929 8 C 0.010 3.990 9 O -0.397 6.397 10 C -0.040 4.040 11 N -0.845 5.845 12 S 2.714 3.286 13 O -0.977 6.977 14 O -0.994 6.994 15 C -0.563 4.563 16 C -0.605 4.605 17 H 0.080 0.920 18 C -0.176 4.176 19 N -0.543 5.543 20 Si 0.785 3.215 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.191 1.191 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.733 -3.887 -11.192 14.718 hybrid contribution -0.170 0.621 1.271 1.425 sum 8.563 -3.266 -9.921 13.506 Atomic orbital electron populations 1.22574 0.92770 1.05126 1.03519 1.21880 0.94994 0.97133 0.84949 0.88554 1.23118 0.80843 1.00277 0.97773 1.87944 1.22399 1.71626 1.47596 1.22491 0.96119 0.93577 0.86036 0.92933 1.22122 0.90934 0.96979 0.88989 1.86466 1.30708 1.76906 1.45606 1.22154 0.80289 1.02509 0.99054 1.57909 1.18801 1.74593 1.33179 1.04869 0.72883 0.77702 0.73160 1.93520 1.50003 1.81873 1.72313 1.93391 1.71421 1.63602 1.70959 1.27854 1.05417 1.15197 1.07824 1.20758 1.30164 0.96237 1.13389 0.91953 1.25803 0.97232 0.94388 1.00131 1.70026 1.44082 1.00951 1.39268 0.85435 0.78586 0.79209 0.78308 1.18787 1.19113 1.19058 0.93553 0.87885 0.90027 0.93220 0.84780 0.90965 0.89598 0.74922 0.87861 0.88587 0.90673 0.89954 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.53 7.62 71.98 0.55 -4.98 16 2 C 0.12 3.30 3.70 44.96 0.17 3.47 16 3 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.06 1.45 6.29 72.08 0.45 1.90 16 5 O -0.38 -10.34 10.35 -144.69 -1.50 -11.84 16 6 C 0.08 2.03 3.06 30.69 0.09 2.13 16 7 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 8 C 0.09 1.68 6.71 71.98 0.48 2.16 16 9 O -0.59 -11.79 13.63 -144.69 -1.97 -13.76 16 10 C 0.09 2.41 5.99 86.35 0.52 2.93 16 11 N -1.01 -33.78 3.26 -489.38 -1.59 -35.37 16 12 S 2.61 112.23 4.78 -56.49 -0.27 111.96 16 13 O -0.99 -45.04 13.62 -127.65 -1.74 -46.78 16 14 O -1.00 -47.19 16.34 -127.65 -2.09 -49.28 16 15 C -0.43 -21.05 5.69 71.23 0.41 -20.65 16 16 C -0.57 -31.62 9.13 25.60 0.23 -31.39 16 17 H 0.06 3.45 7.71 -2.91 -0.02 3.43 16 18 C 0.03 1.53 5.46 84.66 0.46 1.99 16 19 N -0.91 -51.11 13.29 21.45 0.28 -50.83 16 20 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H 0.05 1.67 4.90 -2.39 -0.01 1.65 16 25 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.08 2.72 6.50 -2.39 -0.02 2.71 16 27 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.40 3.66 9.12 -74.06 -0.68 2.98 16 32 H 0.10 3.01 6.64 -2.39 -0.02 3.00 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.08 4.01 6.76 -2.39 -0.02 4.00 16 36 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -72.79 302.93 -3.07 -75.86 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.42 Total: 18.05 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 3.36 Total: -42.43 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.31 Total: -86.20 kcal Atomic # 8 Polarization: -114.36 SS G_CDS: -7.29 Total: -121.65 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 112.23 SS G_CDS: -0.27 Total: 111.96 kcal Total: -72.79 -3.07 -75.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576837291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.881 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds