Wall clock time and date at job start Tue Mar 31 2020 01:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00445 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00269 * 3 2 1 5 5 H 1.48502 * 109.46966 * 29.99714 * 3 2 1 6 6 H 1.48492 * 109.47490 * 150.00093 * 3 2 1 7 7 C 1.37876 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00301 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.27192 * 302.09194 * 9 7 2 11 11 C 1.54602 * 110.39254 * 64.23366 * 9 7 2 12 12 C 1.54932 * 102.91850 * 140.92098 * 11 9 7 13 13 N 1.48525 * 103.22965 * 322.58548 * 12 11 9 14 14 C 1.39707 * 111.00108 * 159.72715 * 13 12 11 15 15 C 1.39315 * 120.48812 * 306.62987 * 14 13 12 16 16 C 1.38501 * 118.35600 * 180.02562 * 15 14 13 17 17 C 1.38274 * 119.24041 * 359.97438 * 16 15 14 18 18 N 1.31853 * 120.92872 * 359.72455 * 17 16 15 19 19 C 1.31812 * 121.79914 * 0.56762 * 18 17 16 20 20 N 1.35501 * 119.66927 * 179.70746 * 19 18 17 21 21 O 1.21799 * 119.99645 * 172.24604 * 20 19 18 22 22 O 1.21799 * 120.00207 * 352.24764 * 20 19 18 23 23 C 1.47897 * 105.82104 * 39.20885 * 13 12 11 24 24 H 0.96996 * 119.99736 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00150 * 57.90930 * 10 9 7 26 26 H 1.09006 * 110.72041 * 259.28177 * 11 9 7 27 27 H 1.09003 * 110.72037 * 22.38366 * 11 9 7 28 28 H 1.09007 * 110.66388 * 204.14712 * 12 11 9 29 29 H 1.08999 * 110.66920 * 81.02472 * 12 11 9 30 30 H 1.07996 * 120.82069 * 0.04218 * 15 14 13 31 31 H 1.08000 * 120.37511 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.53418 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.91656 * 94.02143 * 23 13 12 34 34 H 1.09004 * 109.92309 * 215.31544 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3871 -2.5722 1.1355 11 6 0.4357 -2.6505 -1.3053 12 6 0.5998 -4.1534 -1.6440 13 7 2.0037 -4.4388 -1.2521 14 6 2.1999 -5.8078 -1.0544 15 6 1.3738 -6.5227 -0.1900 16 6 1.6082 -7.8779 -0.0266 17 6 2.6455 -8.4725 -0.7212 18 7 3.4061 -7.7690 -1.5367 19 6 3.2211 -6.4764 -1.7171 20 7 4.0323 -5.7942 -2.5613 21 8 3.7828 -4.6355 -2.8420 22 8 5.0108 -6.3395 -3.0394 23 6 2.2344 -3.6842 -0.0012 24 1 -0.4849 0.8400 0.0004 25 1 -0.2546 -1.8507 1.1886 26 1 -0.6129 -2.4056 -1.1354 27 1 0.8530 -2.0263 -2.0955 28 1 0.4557 -4.3252 -2.7108 29 1 -0.0934 -4.7576 -1.0589 30 1 0.5703 -6.0324 0.3393 31 1 0.9879 -8.4635 0.6358 32 1 2.8323 -9.5291 -0.5977 33 1 2.0441 -4.3251 0.8596 34 1 3.2599 -3.3157 0.0265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:54 Heat of formation + Delta-G solvation = 31.670347 kcal Electronic energy + Delta-G solvation = -22413.215877 eV Core-core repulsion = 18930.285949 eV Total energy + Delta-G solvation = -3482.929929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.68620 -40.52706 -38.60999 -36.17203 -35.20995 -33.10412 -32.17268 -31.98909 -28.98692 -28.33916 -26.90763 -25.01317 -23.61954 -22.57680 -20.81222 -19.68973 -19.47677 -18.47626 -17.55701 -17.26039 -17.01363 -16.51275 -15.54943 -14.96323 -14.53879 -14.33624 -14.08881 -13.92689 -13.44847 -12.87752 -12.62442 -12.12795 -11.93223 -11.41319 -11.25212 -11.00979 -10.87178 -10.84569 -10.64207 -10.54167 -10.50494 -10.34774 -10.25415 -10.08017 -9.58816 -9.26549 -8.67077 -8.32627 -8.22819 -6.28247 -4.33861 -0.36691 0.62831 1.61776 2.08123 3.21100 3.23514 3.30282 3.34822 3.65847 3.91803 4.29106 4.37005 4.43321 4.58339 4.75123 4.98735 5.34075 5.44462 5.50899 5.63837 5.78833 5.82270 5.93064 6.05425 6.21975 6.67859 6.75046 6.83981 6.95539 7.08415 7.26267 7.40288 7.41974 7.74832 8.01847 8.21109 8.67828 9.29184 9.39507 10.79843 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.005677 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.526540 B = 4930.815703 C = 5615.831759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.596 6.596 11 C -0.116 4.116 12 C 0.035 3.965 13 N -0.470 5.470 14 C 0.143 3.857 15 C -0.116 4.116 16 C -0.104 4.104 17 C 0.097 3.903 18 N -0.417 5.417 19 C 0.149 3.851 20 N 0.059 4.941 21 O -0.100 6.100 22 O -0.194 6.194 23 C 0.060 3.940 24 H 0.268 0.732 25 H 0.388 0.612 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.042 0.958 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 -13.550 0.600 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.407 6.407 11 C -0.155 4.155 12 C -0.090 4.090 13 N -0.192 5.192 14 C 0.042 3.958 15 C -0.144 4.144 16 C -0.125 4.125 17 C -0.066 4.066 18 N -0.132 5.132 19 C -0.073 4.073 20 N 0.573 4.427 21 O -0.318 6.318 22 O -0.393 6.393 23 C -0.065 4.065 24 H 0.078 0.922 25 H 0.240 0.760 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.179 0.821 31 H 0.173 0.827 32 H 0.196 0.804 33 H 0.060 0.940 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.579 -14.509 0.227 14.523 hybrid contribution -0.929 1.544 0.725 1.942 sum -1.509 -12.966 0.952 13.088 Atomic orbital electron populations 1.69591 1.05980 1.27656 1.50917 1.24988 0.95020 0.99589 0.93575 0.86405 0.79799 0.82352 0.78394 1.20301 1.21178 1.19746 1.21638 0.93707 0.90215 1.51078 0.91682 1.19282 0.86016 0.91193 0.82661 1.86044 1.52094 1.54189 1.48368 1.23045 1.01262 0.90409 1.00766 1.23545 0.85101 1.00224 1.00090 1.62981 1.25609 0.99446 1.31189 1.20077 0.91082 0.93756 0.90839 1.22576 1.00148 0.94808 0.96872 1.22577 0.97125 0.95131 0.97662 1.22816 0.91267 1.00455 0.92044 1.66847 1.26281 1.04647 1.15391 1.19215 0.96550 0.90983 1.00525 1.39328 1.01020 1.01643 1.00722 1.94759 1.77087 0.98531 1.61460 1.94552 1.18359 1.71279 1.55105 1.23110 1.02076 0.94943 0.86324 0.92206 0.76020 0.90942 0.90394 0.90664 0.93970 0.82125 0.82706 0.80407 0.93983 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.01 10.88 55.43 0.60 -22.40 16 2 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -13.69 8.10 -34.44 -0.28 -13.97 16 8 H 0.06 1.71 7.34 -52.48 -0.39 1.33 16 9 C 0.25 5.78 0.99 -90.41 -0.09 5.69 16 10 O -0.60 -14.23 12.93 -35.23 -0.46 -14.69 16 11 C -0.12 -2.49 5.50 -24.87 -0.14 -2.63 16 12 C 0.04 0.64 6.40 -1.90 -0.01 0.62 16 13 N -0.47 -8.85 2.94 -167.04 -0.49 -9.34 16 14 C 0.14 2.33 4.79 -83.63 -0.40 1.93 16 15 C -0.12 -1.44 8.11 -39.08 -0.32 -1.76 16 16 C -0.10 -0.93 10.10 -39.47 -0.40 -1.33 16 17 C 0.10 0.97 11.18 -17.53 -0.20 0.78 16 18 N -0.42 -6.23 9.83 -13.44 -0.13 -6.36 16 19 C 0.15 2.58 7.36 -158.92 -1.17 1.41 16 20 N 0.06 1.15 4.06 30.29 0.12 1.27 16 21 O -0.10 -2.09 16.66 -29.46 -0.49 -2.58 16 22 O -0.19 -3.90 18.75 -29.46 -0.55 -4.45 16 23 C 0.06 1.24 6.02 -2.76 -0.02 1.22 16 24 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.39 9.51 7.05 45.56 0.32 9.83 16 26 H 0.07 1.59 8.05 -51.93 -0.42 1.17 16 27 H 0.08 1.82 7.86 -51.93 -0.41 1.41 16 28 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.04 0.68 6.45 -51.93 -0.33 0.34 16 30 H 0.16 1.91 7.13 -52.49 -0.37 1.54 16 31 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.04 0.82 6.83 -51.93 -0.35 0.47 16 34 H 0.09 1.95 7.39 -51.93 -0.38 1.57 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -29.26 291.39 -7.88 -37.13 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -2.74 Total: 7.98 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.11 Total: -6.33 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.10 Total: -36.83 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.50 Total: -21.72 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.26 -7.88 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.803 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds