Wall clock time and date at job start Tue Mar 31 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48498 * 109.47270 * 240.00320 * 3 2 1 5 5 H 1.48500 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46888 * 119.99923 * 3 2 1 7 7 C 1.37877 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00426 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.62341 * 56.89365 * 9 7 2 11 11 C 1.55136 * 110.85392 * 293.69169 * 9 7 2 12 12 C 1.54908 * 101.65048 * 205.89254 * 11 9 7 13 13 N 1.47842 * 104.79721 * 37.06465 * 12 11 9 14 14 C 1.39001 * 110.99953 * 213.63698 * 13 12 11 15 15 C 1.39143 * 119.71054 * 300.84431 * 14 13 12 16 16 C 1.38290 * 119.10096 * 179.97438 * 15 14 13 17 17 C 1.38887 * 118.50558 * 0.02562 * 16 15 14 18 18 N 1.48007 * 120.33740 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99745 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00052 * 179.72445 * 18 17 16 21 21 C 1.38023 * 119.32731 * 0.24862 * 17 16 15 22 22 N 1.31971 * 120.85991 * 359.47727 * 21 17 16 23 23 C 1.47437 * 108.56826 * 335.90531 * 13 12 11 24 24 H 0.96996 * 120.00271 * 359.97438 * 1 2 3 25 25 H 0.96695 * 114.00647 * 303.10572 * 10 9 7 26 26 H 1.08998 * 110.99175 * 323.97407 * 11 9 7 27 27 H 1.08994 * 110.99819 * 87.76236 * 11 9 7 28 28 H 1.09008 * 110.37356 * 278.23690 * 12 11 9 29 29 H 1.08998 * 110.37563 * 155.90061 * 12 11 9 30 30 H 1.08005 * 120.44776 * 359.97438 * 15 14 13 31 31 H 1.07993 * 120.75065 * 179.97438 * 16 15 14 32 32 H 1.07999 * 119.56994 * 179.75323 * 21 17 16 33 33 H 1.08999 * 109.88668 * 120.39557 * 23 13 12 34 34 H 1.09001 * 109.89363 * 241.58145 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3664 -2.5696 -1.1205 11 6 0.4710 -2.6866 1.3273 12 6 0.3705 -4.2298 1.4159 13 7 1.6603 -4.7232 0.8880 14 6 1.4948 -5.9273 0.2137 15 6 0.9691 -7.0270 0.8850 16 6 0.8093 -8.2186 0.2018 17 6 1.1823 -8.2715 -1.1350 18 7 1.0293 -9.5263 -1.9048 19 8 0.5747 -10.5196 -1.3661 20 8 1.3537 -9.5644 -3.0782 21 6 1.7025 -7.1435 -1.7368 22 7 1.8390 -6.0179 -1.0616 23 6 2.2284 -3.6934 -0.0012 24 1 -0.4850 0.8400 0.0004 25 1 -0.2685 -1.8418 -1.1667 26 1 1.0321 -2.2829 2.1701 27 1 -0.5183 -2.2332 1.2664 28 1 -0.4543 -4.5923 0.8023 29 1 0.2398 -4.5427 2.4518 30 1 0.6898 -6.9508 1.9255 31 1 0.4043 -9.0889 0.6967 32 1 1.9976 -7.1813 -2.7750 33 1 3.2017 -3.3762 0.3731 34 1 2.3285 -4.0901 -1.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:31 Heat of formation + Delta-G solvation = 3.378719 kcal Electronic energy + Delta-G solvation = -21623.994060 eV Core-core repulsion = 18139.837314 eV Total energy + Delta-G solvation = -3484.156746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.19427 -40.84013 -38.36842 -36.54601 -35.14784 -33.11082 -32.23299 -31.79739 -29.32781 -28.53624 -26.11207 -25.12854 -23.63161 -22.74559 -20.88971 -19.81271 -19.39706 -18.68257 -17.53049 -17.48607 -17.34826 -16.46513 -15.16425 -15.08206 -14.85517 -14.47949 -14.16257 -13.81718 -13.52840 -13.16513 -12.43526 -12.21334 -11.92509 -11.57716 -11.45356 -11.37217 -11.27478 -11.14330 -10.96536 -10.72917 -10.61874 -10.55185 -10.23997 -10.06261 -9.72853 -9.37960 -8.76315 -8.34005 -8.25183 -6.37391 -4.45089 -0.19570 0.81368 1.30931 1.40476 3.15777 3.21230 3.21288 3.24422 3.65258 4.11288 4.20629 4.24797 4.38224 4.66337 4.88855 5.16681 5.29191 5.37591 5.41220 5.56933 5.72407 5.80311 5.87230 6.07374 6.31774 6.41033 6.64097 6.70641 6.77393 7.12717 7.21464 7.27529 7.59612 7.65396 7.66641 7.92706 8.56322 9.23279 9.35385 10.70355 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.004000 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.340615 B = 6998.364202 C = 7284.518736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.242 3.758 10 O -0.588 6.588 11 C -0.134 4.134 12 C 0.048 3.952 13 N -0.467 5.467 14 C 0.375 3.625 15 C -0.192 4.192 16 C 0.008 3.992 17 C -0.150 4.150 18 N 0.046 4.954 19 O -0.176 6.176 20 O -0.169 6.169 21 C 0.214 3.786 22 N -0.499 5.499 23 C 0.038 3.962 24 H 0.270 0.730 25 H 0.385 0.615 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.089 0.911 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -10.811 2.791 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.201 3.799 10 O -0.398 6.398 11 C -0.173 4.173 12 C -0.075 4.075 13 N -0.181 5.181 14 C 0.141 3.859 15 C -0.216 4.216 16 C -0.018 4.018 17 C -0.239 4.239 18 N 0.561 4.439 19 O -0.388 6.388 20 O -0.383 6.383 21 C 0.051 3.949 22 N -0.213 5.213 23 C -0.088 4.088 24 H 0.080 0.920 25 H 0.237 0.763 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.198 0.802 33 H 0.107 0.893 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.888 -9.875 3.134 10.399 hybrid contribution -0.626 0.483 -0.043 0.792 sum 0.263 -9.392 3.091 9.891 Atomic orbital electron populations 1.69552 1.06041 1.27919 1.50413 1.24998 0.95015 0.99622 0.93385 0.86459 0.79552 0.81990 0.78909 1.19945 1.21086 1.20024 1.21501 0.93666 0.90290 1.51886 0.91746 1.19595 0.86105 0.91589 0.82562 1.86116 1.51448 1.53291 1.48941 1.23320 1.02962 0.89467 1.01542 1.23277 0.86226 0.98962 0.99080 1.60617 1.23562 1.02585 1.31293 1.20700 0.84737 0.93575 0.86869 1.21638 1.06093 0.91282 1.02594 1.21253 0.90967 0.98982 0.90636 1.22046 1.19303 0.87465 0.95089 1.43366 0.97479 1.02117 1.00897 1.94510 1.46495 1.25204 1.72599 1.94532 1.53058 1.91022 0.99678 1.22716 0.86948 0.84528 1.00730 1.68180 1.22163 1.23812 1.07192 1.23228 0.98631 0.89949 0.96944 0.92000 0.76297 0.90968 0.89718 0.92704 0.90319 0.82530 0.82163 0.80201 0.89315 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.58 10.69 55.43 0.59 -21.98 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 3 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.54 -13.44 8.22 -34.44 -0.28 -13.72 16 8 H 0.06 1.61 7.53 -52.48 -0.40 1.21 16 9 C 0.24 5.54 0.85 -89.96 -0.08 5.47 16 10 O -0.59 -14.46 13.08 -35.23 -0.46 -14.92 16 11 C -0.13 -2.74 5.67 -24.59 -0.14 -2.88 16 12 C 0.05 0.80 6.07 -2.30 -0.01 0.79 16 13 N -0.47 -8.08 5.20 -170.00 -0.88 -8.96 16 14 C 0.37 5.90 6.15 -155.02 -0.95 4.95 16 15 C -0.19 -2.36 9.38 -39.23 -0.37 -2.72 16 16 C 0.01 0.09 9.66 -39.32 -0.38 -0.29 16 17 C -0.15 -2.01 6.87 -79.79 -0.55 -2.56 16 18 N 0.05 0.66 4.45 34.04 0.15 0.81 16 19 O -0.18 -2.57 18.52 -29.46 -0.55 -3.11 16 20 O -0.17 -2.53 18.46 -29.46 -0.54 -3.07 16 21 C 0.21 2.99 10.71 -17.57 -0.19 2.80 16 22 N -0.50 -8.19 7.95 -12.44 -0.10 -8.29 16 23 C 0.04 0.77 6.12 -2.84 -0.02 0.75 16 24 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 25 H 0.39 9.69 6.98 45.56 0.32 10.01 16 26 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 27 H 0.08 1.83 7.76 -51.93 -0.40 1.43 16 28 H 0.05 0.93 7.78 -51.92 -0.40 0.52 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.16 1.52 7.98 -52.48 -0.42 1.10 16 31 H 0.16 1.43 7.69 -52.49 -0.40 1.03 16 32 H 0.18 2.16 7.61 -52.49 -0.40 1.76 16 33 H 0.09 1.79 7.63 -51.93 -0.40 1.39 16 34 H 0.10 2.15 5.83 -51.93 -0.30 1.85 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -26.63 295.50 -8.20 -34.83 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -2.78 Total: 11.30 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.06 Total: -5.72 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.24 Total: -38.42 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.55 Total: -21.10 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.63 -8.20 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.212 kcal (2) G-P(sol) polarization free energy of solvation -26.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds