Wall clock time and date at job start Tue Mar 31 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48498 * 109.47270 * 240.00320 * 3 2 1 5 5 H 1.48500 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46888 * 119.99923 * 3 2 1 7 7 C 1.37877 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00426 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.62341 * 56.89365 * 9 7 2 11 11 C 1.55136 * 110.85392 * 293.69169 * 9 7 2 12 12 C 1.54908 * 101.65048 * 205.89254 * 11 9 7 13 13 N 1.47842 * 104.79721 * 37.06465 * 12 11 9 14 14 C 1.39001 * 110.99953 * 213.63698 * 13 12 11 15 15 C 1.39143 * 119.71054 * 300.84431 * 14 13 12 16 16 C 1.38290 * 119.10096 * 179.97438 * 15 14 13 17 17 C 1.38887 * 118.50558 * 0.02562 * 16 15 14 18 18 N 1.48007 * 120.33740 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99745 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00052 * 179.72445 * 18 17 16 21 21 C 1.38023 * 119.32731 * 0.24862 * 17 16 15 22 22 N 1.31971 * 120.85991 * 359.47727 * 21 17 16 23 23 C 1.47437 * 108.56826 * 335.90531 * 13 12 11 24 24 H 0.96996 * 120.00271 * 359.97438 * 1 2 3 25 25 H 0.96695 * 114.00647 * 303.10572 * 10 9 7 26 26 H 1.08998 * 110.99175 * 323.97407 * 11 9 7 27 27 H 1.08994 * 110.99819 * 87.76236 * 11 9 7 28 28 H 1.09008 * 110.37356 * 278.23690 * 12 11 9 29 29 H 1.08998 * 110.37563 * 155.90061 * 12 11 9 30 30 H 1.08005 * 120.44776 * 359.97438 * 15 14 13 31 31 H 1.07993 * 120.75065 * 179.97438 * 16 15 14 32 32 H 1.07999 * 119.56994 * 179.75323 * 21 17 16 33 33 H 1.08999 * 109.88668 * 120.39557 * 23 13 12 34 34 H 1.09001 * 109.89363 * 241.58145 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3664 -2.5696 -1.1205 11 6 0.4710 -2.6866 1.3273 12 6 0.3705 -4.2298 1.4159 13 7 1.6603 -4.7232 0.8880 14 6 1.4948 -5.9273 0.2137 15 6 0.9691 -7.0270 0.8850 16 6 0.8093 -8.2186 0.2018 17 6 1.1823 -8.2715 -1.1350 18 7 1.0293 -9.5263 -1.9048 19 8 0.5747 -10.5196 -1.3661 20 8 1.3537 -9.5644 -3.0782 21 6 1.7025 -7.1435 -1.7368 22 7 1.8390 -6.0179 -1.0616 23 6 2.2284 -3.6934 -0.0012 24 1 -0.4850 0.8400 0.0004 25 1 -0.2685 -1.8418 -1.1667 26 1 1.0321 -2.2829 2.1701 27 1 -0.5183 -2.2332 1.2664 28 1 -0.4543 -4.5923 0.8023 29 1 0.2398 -4.5427 2.4518 30 1 0.6898 -6.9508 1.9255 31 1 0.4043 -9.0889 0.6967 32 1 1.9976 -7.1813 -2.7750 33 1 3.2017 -3.3762 0.3731 34 1 2.3285 -4.0901 -1.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:30 Heat of formation + Delta-G solvation = -13.710807 kcal Electronic energy + Delta-G solvation = -21624.735117 eV Core-core repulsion = 18139.837314 eV Total energy + Delta-G solvation = -3484.897803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.31753 -42.03581 -39.80495 -37.68550 -36.78558 -34.21533 -34.15587 -33.09545 -30.71048 -30.12206 -27.44407 -26.66853 -24.82244 -23.98020 -22.25860 -21.46297 -20.48379 -19.83356 -19.19522 -18.74105 -18.64775 -17.66970 -16.95721 -16.49710 -16.12181 -15.84613 -15.63409 -15.11214 -14.68315 -14.46025 -13.94850 -13.88176 -13.49792 -13.21777 -12.97949 -12.73158 -12.67167 -12.43037 -12.37427 -12.30681 -12.29748 -12.05557 -11.66281 -11.38792 -11.03000 -10.82833 -10.63877 -10.15872 -9.56184 -8.26449 -6.40559 -1.32056 -0.18105 0.17582 0.29833 1.41411 1.43532 1.50192 2.09463 2.36571 2.48940 2.98133 3.03209 3.23183 3.35953 3.56314 3.78216 4.02756 4.19176 4.26454 4.34284 4.36371 4.48344 4.63333 4.70687 4.89167 5.04572 5.11439 5.25416 5.27694 5.47515 5.50818 5.75601 5.85799 6.06062 6.47124 6.51337 6.62952 7.30472 7.40920 8.79274 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039800 B = 0.004000 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.340615 B = 6998.364202 C = 7284.518736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.034 3.966 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.056 0.944 9 C 0.225 3.775 10 O -0.598 6.598 11 C -0.128 4.128 12 C 0.059 3.941 13 N -0.464 5.464 14 C 0.348 3.652 15 C -0.174 4.174 16 C 0.021 3.979 17 C -0.148 4.148 18 N 0.045 4.955 19 O -0.164 6.164 20 O -0.191 6.191 21 C 0.206 3.794 22 N -0.530 5.530 23 C 0.047 3.953 24 H 0.271 0.729 25 H 0.378 0.622 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.191 0.809 31 H 0.195 0.805 32 H 0.190 0.810 33 H 0.082 0.918 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -12.268 4.241 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.074 0.926 9 C 0.185 3.815 10 O -0.407 6.407 11 C -0.167 4.167 12 C -0.065 4.065 13 N -0.179 5.179 14 C 0.116 3.884 15 C -0.197 4.197 16 C -0.005 4.005 17 C -0.236 4.236 18 N 0.560 4.440 19 O -0.381 6.381 20 O -0.400 6.400 21 C 0.044 3.956 22 N -0.245 5.245 23 C -0.080 4.080 24 H 0.080 0.920 25 H 0.229 0.771 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.208 0.792 31 H 0.213 0.787 32 H 0.207 0.793 33 H 0.100 0.900 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.567 -11.349 4.540 12.237 hybrid contribution -0.546 0.836 -0.526 1.129 sum 0.021 -10.513 4.014 11.253 Atomic orbital electron populations 1.69628 1.06755 1.28420 1.50471 1.25618 0.95783 1.02104 0.93130 0.85609 0.78473 0.78849 0.78687 1.20303 1.20642 1.19528 1.21803 0.93622 0.91920 1.52471 0.92573 1.19841 0.86585 0.91903 0.83158 1.86110 1.51557 1.52882 1.50192 1.23078 1.01261 0.92598 0.99730 1.23243 0.86053 0.95877 1.01339 1.60700 1.23911 1.02283 1.30971 1.20925 0.86448 0.93816 0.87167 1.21910 1.04110 0.89875 1.03806 1.21649 0.89467 0.99787 0.89562 1.22169 1.18979 0.86687 0.95796 1.43490 0.97292 1.02353 1.00881 1.94494 1.45760 1.25425 1.72414 1.94548 1.54073 1.91266 1.00130 1.22825 0.87275 0.84362 1.01177 1.68060 1.23059 1.25148 1.08212 1.22936 0.97948 0.89980 0.97124 0.91958 0.77100 0.91680 0.91499 0.92942 0.86256 0.79165 0.78750 0.79313 0.89958 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.40 10.69 21.45 0.23 -46.17 16 2 C 0.03 1.72 5.28 84.66 0.45 2.17 16 3 Si 0.96 40.56 29.54 68.60 2.03 42.58 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.56 -28.72 8.22 25.60 0.21 -28.51 16 8 H 0.06 2.88 7.53 -2.91 -0.02 2.86 16 9 C 0.23 10.50 0.85 -10.36 -0.01 10.49 16 10 O -0.60 -30.18 13.08 -148.98 -1.95 -32.13 16 11 C -0.13 -5.21 5.67 31.98 0.18 -5.03 16 12 C 0.06 1.84 6.07 86.77 0.53 2.36 16 13 N -0.46 -15.42 5.20 -691.75 -3.60 -19.01 16 14 C 0.35 10.33 6.15 133.06 0.82 11.15 16 15 C -0.17 -3.59 9.38 22.50 0.21 -3.38 16 16 C 0.02 0.40 9.66 22.44 0.22 0.62 16 17 C -0.15 -3.61 6.87 36.48 0.25 -3.36 16 18 N 0.05 1.22 4.45 -46.22 -0.21 1.01 16 19 O -0.16 -4.34 18.52 18.88 0.35 -3.99 16 20 O -0.19 -5.53 18.46 18.89 0.35 -5.18 16 21 C 0.21 5.57 10.71 84.62 0.91 6.47 16 22 N -0.53 -17.08 7.95 -193.26 -1.54 -18.61 16 23 C 0.05 1.91 6.12 86.65 0.53 2.44 16 24 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.38 19.65 6.98 -74.06 -0.52 19.14 16 26 H 0.06 2.69 8.05 -2.39 -0.02 2.67 16 27 H 0.07 2.92 7.76 -2.39 -0.02 2.91 16 28 H 0.05 1.67 7.78 -2.38 -0.02 1.65 16 29 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.19 2.64 7.98 -2.91 -0.02 2.61 16 31 H 0.20 2.42 7.69 -2.91 -0.02 2.39 16 32 H 0.19 4.52 7.61 -2.91 -0.02 4.50 16 33 H 0.08 3.41 7.63 -2.39 -0.02 3.39 16 34 H 0.09 3.85 5.83 -2.39 -0.01 3.84 16 Total: -1.00 -57.97 295.50 0.59 -57.38 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.64 Total: 28.68 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 4.29 Total: -4.56 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -5.11 Total: -82.79 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.25 Total: -41.29 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -57.97 0.59 -57.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.671 kcal (2) G-P(sol) polarization free energy of solvation -57.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds