Wall clock time and date at job start Tue Mar 31 2020 00:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00405 * 2 1 4 4 C 1.52999 * 109.47592 * 179.97438 * 3 2 1 5 5 S 1.81396 * 109.47164 * 179.97438 * 4 3 2 6 6 O 1.42104 * 110.54380 * 68.37944 * 5 4 3 7 7 O 1.42097 * 110.54433 * 291.62506 * 5 4 3 8 8 N 1.65605 * 104.44928 * 179.97438 * 5 4 3 9 9 C 1.47020 * 125.64811 * 270.04619 * 8 5 4 10 10 C 1.54374 * 107.28963 * 181.05363 * 9 8 5 11 11 C 1.55169 * 102.91612 * 22.13559 * 10 9 8 12 12 O 1.42900 * 110.99902 * 82.64156 * 11 10 9 13 13 C 1.50700 * 111.00251 * 206.45289 * 11 10 9 14 14 H 1.07999 * 119.99988 * 115.41972 * 13 11 10 15 15 C 1.37885 * 120.00047 * 295.42152 * 13 11 10 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 11 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47081 * 119.99727 * 17 15 13 20 20 H 1.48501 * 109.47213 * 240.00099 * 17 15 13 21 21 C 1.47423 * 125.64938 * 89.99879 * 8 5 4 22 22 H 1.08997 * 109.47222 * 300.00025 * 1 2 3 23 23 H 1.08999 * 109.47171 * 60.00186 * 1 2 3 24 24 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47107 * 59.99943 * 3 2 1 26 26 H 1.09009 * 109.47069 * 299.99706 * 3 2 1 27 27 H 1.09002 * 109.46888 * 59.99874 * 4 3 2 28 28 H 1.08997 * 109.47075 * 300.00236 * 4 3 2 29 29 H 1.08992 * 109.88250 * 300.43804 * 9 8 5 30 30 H 1.09003 * 109.88656 * 61.45222 * 9 8 5 31 31 H 1.09000 * 110.70693 * 263.79996 * 10 9 8 32 32 H 1.08995 * 110.75673 * 140.50194 * 10 9 8 33 33 H 0.96701 * 114.00031 * 64.58556 * 12 11 10 34 34 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 35 35 H 1.09009 * 110.36200 * 37.06840 * 21 8 5 36 36 H 1.09002 * 110.37071 * 274.75107 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2733 2.8417 -0.0001 6 8 4.0277 3.4975 1.2364 7 8 4.0286 3.4959 -1.2376 8 7 5.9064 2.5670 0.0014 9 6 6.7502 2.4248 1.1969 10 6 8.1998 2.2085 0.7121 11 6 8.1789 2.8039 -0.7206 12 8 8.3461 4.2227 -0.6880 13 6 9.2284 2.1590 -1.5889 14 1 8.9337 1.5701 -2.4449 15 6 10.5648 2.3208 -1.2905 16 7 10.9237 3.0425 -0.2512 17 14 11.8656 1.5221 -2.3671 18 1 11.2062 0.7745 -3.4679 19 1 12.7471 2.5713 -2.9392 20 1 12.6774 0.5849 -1.5499 21 6 6.7546 2.4234 -1.1958 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8463 -0.8901 27 1 3.8574 0.6435 -0.8891 28 1 3.8567 0.6438 0.8908 29 1 6.6932 3.3304 1.8006 30 1 6.4208 1.5671 1.7834 31 1 8.4425 1.1462 0.6846 32 1 8.9034 2.7498 1.3445 33 1 9.2057 4.5098 -0.3505 34 1 11.8639 3.1560 -0.0411 35 1 6.4220 3.1035 -1.9801 36 1 6.7362 1.3936 -1.5526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592072156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:32 Heat of formation + Delta-G solvation = -161.756523 kcal Electronic energy + Delta-G solvation = -20734.757406 eV Core-core repulsion = 17346.591058 eV Total energy + Delta-G solvation = -3388.166347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.21438 -38.03722 -36.89746 -35.73539 -34.26670 -32.16257 -32.06498 -29.26808 -28.27522 -26.81212 -24.89767 -23.56538 -21.47854 -19.83147 -18.60514 -17.69969 -17.19183 -16.63878 -16.58081 -15.92191 -15.50853 -15.06903 -14.96532 -14.48880 -14.10654 -13.79634 -13.35352 -12.88340 -12.51545 -12.39289 -12.00093 -11.96980 -11.86310 -11.79671 -11.72655 -11.65512 -11.33171 -11.04574 -10.87671 -10.73308 -10.50325 -10.42681 -10.03388 -10.01716 -9.38984 -8.69286 -8.37463 -8.17146 -6.28543 -4.36639 0.34965 2.87982 3.18530 3.27936 3.31625 3.47721 4.11535 4.22210 4.27523 4.45713 4.65349 4.90290 4.98321 5.04450 5.04651 5.30849 5.35970 5.38750 5.57053 5.78942 5.94140 5.98331 6.24385 6.40654 6.60202 6.74944 6.79352 6.92752 7.03064 7.34204 7.37657 7.74347 8.02585 8.65833 9.32352 9.47508 10.79008 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.004481 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.394202 B = 6246.806591 C = 6594.624325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.382 6.382 3 C 0.076 3.924 4 C -0.645 4.645 5 S 2.633 3.367 6 O -0.955 6.955 7 O -0.950 6.950 8 N -1.002 6.002 9 C 0.121 3.879 10 C -0.134 4.134 11 C 0.253 3.747 12 O -0.582 6.582 13 C -0.536 4.536 14 H 0.066 0.934 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.127 3.873 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.383 0.617 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 -5.220 2.435 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C -0.003 4.003 4 C -0.771 4.771 5 S 2.724 3.276 6 O -0.945 6.945 7 O -0.940 6.940 8 N -0.841 5.841 9 C -0.004 4.004 10 C -0.174 4.174 11 C 0.211 3.789 12 O -0.391 6.391 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.003 3.997 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.234 0.766 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.548 -4.510 2.293 15.403 hybrid contribution 1.219 -1.120 -0.204 1.669 sum -13.329 -5.631 2.089 14.619 Atomic orbital electron populations 1.22829 0.80703 1.03123 1.00409 1.87941 1.19940 1.26767 1.95471 1.22057 0.90189 0.86441 1.01564 1.31034 1.04825 1.28526 1.12693 1.04287 0.72851 0.76220 0.74207 1.93568 1.84539 1.70957 1.45484 1.93586 1.84362 1.70864 1.45202 1.58374 1.22611 1.88126 1.15021 1.21843 0.92938 0.99691 0.85912 1.23196 0.91802 1.01736 1.00666 1.19569 0.89087 0.79869 0.90380 1.86122 1.41337 1.23032 1.88647 1.21538 0.90841 1.32361 1.12761 0.91600 1.25003 0.98696 0.94502 0.94877 1.69666 1.17587 1.39456 1.26732 0.86363 0.81091 0.79086 0.80382 1.19617 1.20801 1.20896 1.22236 0.91329 1.00158 0.85978 0.93696 0.93661 0.89270 0.91782 0.91695 0.84253 0.84422 0.91882 0.93354 0.91472 0.89806 0.76634 0.92214 0.90424 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.59 10.70 -35.23 -0.38 -4.97 16 3 C 0.08 0.88 5.95 37.16 0.22 1.10 16 4 C -0.64 -7.92 6.55 37.16 0.24 -7.68 16 5 S 2.63 42.75 5.65 -107.50 -0.61 42.15 16 6 O -0.96 -17.52 17.60 -57.54 -1.01 -18.53 16 7 O -0.95 -18.03 17.28 -57.54 -0.99 -19.02 16 8 N -1.00 -18.48 3.62 -111.40 -0.40 -18.88 16 9 C 0.12 2.23 6.90 -3.04 -0.02 2.21 16 10 C -0.13 -2.86 5.52 -24.86 -0.14 -2.99 16 11 C 0.25 6.00 0.88 -89.62 -0.08 5.92 16 12 O -0.58 -14.92 13.17 -35.23 -0.46 -15.38 16 13 C -0.54 -13.61 8.25 -34.44 -0.28 -13.89 16 14 H 0.07 1.64 7.78 -52.49 -0.41 1.23 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 16 N -0.90 -22.83 10.76 55.43 0.60 -22.23 16 17 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.13 2.63 6.25 -2.54 -0.02 2.61 16 22 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.14 1.58 8.14 -51.92 -0.42 1.16 16 28 H 0.14 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 32 H 0.08 1.89 7.69 -51.93 -0.40 1.49 16 33 H 0.38 9.84 7.24 45.56 0.33 10.17 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.08 1.66 7.67 -51.92 -0.40 1.27 16 36 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -30.94 314.26 -7.25 -38.20 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.65 Total: 8.80 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.95 Total: -9.68 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.19 Total: -41.11 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -2.85 Total: -57.90 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 42.75 SS G_CDS: -0.61 Total: 42.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.94 -7.25 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.561 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds