Wall clock time and date at job start Tue Mar 31 2020 00:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34747 * 117.00245 * 2 1 4 4 O 1.21509 * 120.00061 * 359.97438 * 3 2 1 5 5 C 1.47408 * 120.00100 * 179.97438 * 3 2 1 6 6 C 1.39867 * 120.15741 * 0.02562 * 5 3 2 7 7 C 1.37862 * 120.07065 * 180.02562 * 6 5 3 8 8 C 1.38406 * 120.40484 * 359.70129 * 7 6 5 9 9 C 1.38799 * 120.31633 * 0.55204 * 8 7 6 10 10 N 1.39589 * 120.04181 * 179.74788 * 9 8 7 11 11 C 1.34769 * 119.99849 * 24.88052 * 10 9 8 12 12 O 1.21771 * 120.00254 * 5.51972 * 11 10 9 13 13 C 1.41814 * 119.99761 * 185.52651 * 11 10 9 14 14 H 1.08007 * 120.00347 * 359.97438 * 13 11 10 15 15 C 1.40140 * 120.00126 * 179.97438 * 13 11 10 16 16 N 1.30636 * 119.99611 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00301 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47191 * 59.99861 * 17 15 13 19 19 H 1.48495 * 109.47021 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46876 * 300.00012 * 17 15 13 21 21 C 1.39601 * 119.91748 * 359.47148 * 9 8 7 22 22 O 1.35652 * 120.19562 * 180.22749 * 21 9 8 23 23 C 1.42902 * 116.99844 * 90.00443 * 22 21 9 24 24 H 1.08998 * 109.47206 * 300.00652 * 1 2 3 25 25 H 1.09000 * 109.46819 * 60.00213 * 1 2 3 26 26 H 1.08997 * 109.47586 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.96202 * 359.97438 * 6 5 3 28 28 H 1.08002 * 119.79559 * 179.97438 * 7 6 5 29 29 H 1.07995 * 119.84386 * 180.27940 * 8 7 6 30 30 H 0.97006 * 119.99535 * 205.15349 * 10 9 8 31 31 H 0.96998 * 119.99662 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.47017 * 179.97438 * 23 22 21 33 33 H 1.09004 * 109.47063 * 299.99880 * 23 22 21 34 34 H 1.08997 * 109.47266 * 59.99616 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5359 1.2777 0.0006 6 6 4.3008 0.1067 0.0006 7 6 5.6775 0.1809 0.0016 8 6 6.3127 1.4106 -0.0035 9 6 5.5697 2.5830 0.0017 10 7 6.2163 3.8201 0.0018 11 6 7.4650 3.9278 -0.4938 12 8 7.9909 2.9707 -1.0324 13 6 8.1664 5.1558 -0.3878 14 1 7.6998 6.0048 0.0897 15 6 9.4650 5.2677 -0.9027 16 7 10.0295 4.2406 -1.4797 17 14 10.3887 6.8854 -0.7637 18 1 10.5380 7.2487 0.6684 19 1 11.7320 6.7429 -1.3804 20 1 9.6304 7.9503 -1.4682 21 6 4.1750 2.5235 0.0011 22 8 3.4433 3.6658 0.0016 23 6 3.0939 4.2129 -1.2715 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.8125 -0.8565 0.0006 28 1 6.2638 -0.7261 0.0021 29 1 7.3916 1.4582 -0.0072 30 1 5.7684 4.6014 0.3622 31 1 10.9282 4.3182 -1.8364 32 1 2.5106 5.1225 -1.1283 33 1 4.0015 4.4466 -1.8280 34 1 2.5027 3.4866 -1.8292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593808213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:01 Heat of formation + Delta-G solvation = -124.846907 kcal Electronic energy + Delta-G solvation = -21624.401251 eV Core-core repulsion = 18102.391474 eV Total energy + Delta-G solvation = -3522.009777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54770 -39.40683 -37.68362 -36.55647 -36.09936 -33.63270 -32.50637 -30.60358 -29.18901 -27.69889 -26.72377 -26.17288 -23.76583 -22.00816 -21.05956 -19.86729 -17.95490 -17.43482 -17.29074 -16.53775 -16.25642 -15.73545 -15.44479 -15.15178 -14.94835 -14.33792 -14.09785 -13.52790 -13.41645 -13.16771 -12.85014 -12.70438 -12.22993 -11.96359 -11.66959 -11.53415 -11.43557 -11.16557 -11.03206 -10.74231 -10.71670 -10.43438 -10.27868 -9.76647 -9.45498 -8.98630 -8.47845 -7.79160 -7.11616 -6.46387 -4.99968 1.02081 1.71605 2.78244 2.87811 3.03191 3.08616 3.10445 3.83663 3.91441 4.24778 4.47473 4.50446 4.92658 5.05322 5.12405 5.34218 5.43494 5.51919 5.58720 5.66894 5.72987 5.78726 5.92714 5.99663 6.09977 6.45835 6.47310 6.75317 6.87577 7.13196 7.19778 7.66797 7.78477 7.94079 7.96158 8.10959 8.71168 9.15499 10.26845 10.45709 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.004381 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.016238 B = 6390.156026 C = 7034.931299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.510 3.490 4 O -0.495 6.495 5 C -0.133 4.133 6 C -0.102 4.102 7 C -0.116 4.116 8 C -0.097 4.097 9 C 0.173 3.827 10 N -0.688 5.688 11 C 0.541 3.459 12 O -0.566 6.566 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.745 5.745 17 Si 0.915 3.085 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.265 1.265 21 C 0.090 3.910 22 O -0.319 6.319 23 C 0.047 3.953 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.164 0.836 30 H 0.398 0.602 31 H 0.275 0.725 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -5.508 1.940 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.355 3.645 4 O -0.383 6.383 5 C -0.136 4.136 6 C -0.122 4.122 7 C -0.135 4.135 8 C -0.118 4.118 9 C 0.071 3.929 10 N -0.330 5.330 11 C 0.352 3.648 12 O -0.451 6.451 13 C -0.569 4.569 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.372 5.372 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.190 1.190 21 C 0.041 3.959 22 O -0.235 6.235 23 C -0.047 4.047 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.181 0.819 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.645 -5.746 1.597 13.083 hybrid contribution -0.053 1.174 -0.015 1.175 sum -11.698 -4.572 1.582 12.659 Atomic orbital electron populations 1.23194 0.76688 1.03302 1.02393 1.86565 1.22965 1.33191 1.84869 1.21124 0.89068 0.81234 0.73081 1.90838 1.66623 1.35631 1.45169 1.19056 0.88671 0.94027 1.11809 1.21103 0.93849 0.96692 1.00565 1.21054 0.93776 0.97919 1.00754 1.21969 1.03168 0.89871 0.96773 1.18235 0.89231 0.88769 0.96634 1.44178 1.18330 1.07163 1.63304 1.17092 0.78303 0.90461 0.78985 1.90591 1.66592 1.40420 1.47457 1.20046 0.99886 0.97600 1.39401 0.91019 1.25766 0.97302 0.97684 0.92790 1.69986 1.13067 1.29771 1.24413 0.86301 0.78539 0.81782 0.79516 1.18948 1.20284 1.18998 1.18337 0.88225 0.85040 1.04265 1.85930 1.70912 1.37513 1.29130 1.22835 0.99324 0.98025 0.84519 0.92043 0.92125 0.88320 0.85104 0.85376 0.81868 0.76757 0.91444 0.89280 0.93656 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.92 9.81 -40.62 -0.40 -5.32 16 3 C 0.51 8.49 7.89 34.46 0.27 8.76 16 4 O -0.49 -9.06 13.80 -26.60 -0.37 -9.42 16 5 C -0.13 -2.35 5.88 -104.89 -0.62 -2.96 16 6 C -0.10 -1.59 9.61 -39.11 -0.38 -1.96 16 7 C -0.12 -1.91 10.01 -39.66 -0.40 -2.31 16 8 C -0.10 -1.97 8.70 -39.31 -0.34 -2.32 16 9 C 0.17 3.66 6.44 -83.61 -0.54 3.12 16 10 N -0.69 -15.56 5.25 -12.32 -0.06 -15.62 16 11 C 0.54 14.51 7.37 -14.90 -0.11 14.40 16 12 O -0.57 -16.73 12.03 5.13 0.06 -16.67 16 13 C -0.53 -14.15 9.32 -37.50 -0.35 -14.50 16 14 H 0.07 1.74 7.85 -52.48 -0.41 1.32 16 15 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 16 N -0.75 -20.68 11.73 55.56 0.65 -20.03 16 17 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 18 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C 0.09 1.75 5.76 -38.41 -0.22 1.53 16 22 O -0.32 -6.07 8.26 -40.57 -0.34 -6.41 16 23 C 0.05 0.78 10.49 101.05 1.06 1.84 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.13 1.67 7.60 -52.49 -0.40 1.27 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.16 3.79 5.76 -52.49 -0.30 3.49 16 30 H 0.40 8.20 8.31 -40.82 -0.34 7.86 16 31 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.65 7.50 -51.93 -0.39 0.27 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -32.08 303.38 -5.06 -37.15 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.51 Total: 8.71 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -0.65 Total: 9.23 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.59 Total: -35.65 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.04 Total: -37.82 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.08 -5.06 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593808213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.701 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds