Wall clock time and date at job start Tue Mar 31 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99954 * 2 1 4 4 H 1.48502 * 109.46954 * 239.99725 * 3 2 1 5 5 H 1.48501 * 109.46782 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46926 * 119.99736 * 3 2 1 7 7 C 1.37878 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46863 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46834 * 180.02562 * 10 9 7 12 12 C 1.35273 * 125.76072 * 124.99798 * 11 10 9 13 13 C 1.36476 * 106.03630 * 179.97438 * 12 11 10 14 14 C 1.48452 * 126.90052 * 179.97438 * 13 12 11 15 15 C 1.39471 * 120.13777 * 359.72223 * 14 13 12 16 16 F 1.35100 * 120.07133 * 0.02562 * 15 14 13 17 17 C 1.38270 * 119.85464 * 179.77081 * 15 14 13 18 18 C 1.38292 * 120.13926 * 0.52971 * 17 15 14 19 19 C 1.38287 * 120.28485 * 359.69850 * 18 17 15 20 20 C 1.38270 * 120.13889 * 0.04405 * 19 18 17 21 21 F 1.35105 * 120.07012 * 180.02562 * 20 19 18 22 22 N 1.34496 * 106.19716 * 359.97438 * 13 12 11 23 23 N 1.28612 * 108.79749 * 359.97438 * 22 13 12 24 24 H 0.97004 * 120.00139 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47230 * 60.00137 * 9 7 2 26 26 H 1.09007 * 109.46987 * 299.99964 * 9 7 2 27 27 H 1.08992 * 109.47343 * 60.00327 * 10 9 7 28 28 H 1.08997 * 109.46929 * 299.99368 * 10 9 7 29 29 H 1.07998 * 126.98026 * 0.02562 * 12 11 10 30 30 H 1.08003 * 119.93110 * 180.22426 * 17 15 14 31 31 H 1.07998 * 119.85875 * 179.72212 * 18 17 15 32 32 H 1.07993 * 119.93215 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 1.6632 -5.9300 -0.9006 13 6 0.7924 -6.9108 -0.5235 14 6 0.5782 -8.2183 -1.1931 15 6 1.3048 -8.5463 -2.3376 16 9 2.2065 -7.6746 -2.8399 17 6 1.1040 -9.7677 -2.9538 18 6 0.1773 -10.6586 -2.4440 19 6 -0.5497 -10.3374 -1.3124 20 6 -0.3545 -9.1215 -0.6838 21 9 -1.0652 -8.8093 0.4221 22 7 0.1672 -6.4549 0.5766 23 7 0.6196 -5.2835 0.8548 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 2.3362 -5.9481 -1.7450 30 1 1.6686 -10.0244 -3.8380 31 1 0.0209 -11.6095 -2.9316 32 1 -1.2716 -11.0376 -0.9189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594648822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:31 Heat of formation + Delta-G solvation = 6.893168 kcal Electronic energy + Delta-G solvation = -20468.573565 eV Core-core repulsion = 16873.481702 eV Total energy + Delta-G solvation = -3595.091863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.10931 -49.88371 -44.28010 -39.66167 -36.85002 -34.92728 -33.69538 -31.90262 -31.28675 -30.39940 -27.46571 -25.06391 -24.51342 -23.65859 -22.77750 -21.69810 -19.21289 -18.99201 -18.05436 -17.88311 -17.56597 -17.02081 -16.91803 -16.57786 -16.48390 -16.27637 -16.07250 -15.34322 -15.09489 -14.94342 -14.35068 -13.74287 -13.67028 -13.17687 -13.04087 -12.87235 -12.86288 -12.67627 -12.49230 -12.33752 -12.09976 -11.83342 -11.51939 -11.29774 -10.93157 -10.64717 -9.74661 -9.42099 -8.28382 -6.43587 -0.34493 0.00245 0.60804 1.37141 1.44575 1.45185 1.50017 1.53168 2.37940 2.51012 2.82763 2.97428 3.06838 3.34406 3.50298 3.75599 3.83026 3.86343 4.15863 4.19066 4.24561 4.48463 4.59993 4.64654 4.87380 4.96748 5.07656 5.13144 5.22423 5.23619 5.38425 5.47603 5.70800 5.78870 6.00260 6.72296 7.27890 7.37275 8.84160 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.034594 B = 0.003569 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.185538 B = 7844.330148 C = 8351.018296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.023 3.977 10 C 0.122 3.878 11 N -0.274 5.274 12 C -0.025 4.025 13 C -0.019 4.019 14 C -0.099 4.099 15 C 0.127 3.873 16 F -0.130 7.130 17 C -0.147 4.147 18 C -0.040 4.040 19 C -0.155 4.155 20 C 0.118 3.882 21 F -0.137 7.137 22 N -0.286 5.286 23 N -0.115 5.115 24 H 0.265 0.735 25 H -0.008 1.008 26 H -0.003 1.003 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.229 0.771 30 H 0.181 0.819 31 H 0.194 0.806 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -23.216 -9.333 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.101 0.899 9 C -0.015 4.015 10 C 0.004 3.996 11 N -0.066 5.066 12 C -0.178 4.178 13 C -0.157 4.157 14 C -0.102 4.102 15 C 0.107 3.893 16 F -0.109 7.109 17 C -0.165 4.165 18 C -0.058 4.058 19 C -0.173 4.173 20 C 0.098 3.902 21 F -0.115 7.115 22 N -0.152 5.152 23 N -0.094 5.094 24 H 0.074 0.926 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.125 0.875 28 H 0.151 0.849 29 H 0.245 0.755 30 H 0.198 0.802 31 H 0.211 0.789 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.290 -22.553 -7.983 24.306 hybrid contribution 0.457 1.510 -0.291 1.604 sum 4.747 -21.043 -8.274 23.104 Atomic orbital electron populations 1.70137 1.08330 1.28271 1.50583 1.26081 0.95681 1.03944 0.94127 0.85327 0.78020 0.77081 0.79580 1.18367 1.21427 1.18828 1.21417 0.94220 0.90571 1.52132 0.89897 1.19160 0.94214 0.92306 0.95834 1.22650 0.94321 0.76343 1.06334 1.47941 1.25526 1.15759 1.17329 1.24465 1.05188 0.88384 0.99773 1.20522 1.00438 0.97226 0.97526 1.17923 1.02225 0.92062 0.98027 1.17508 0.89818 0.89736 0.92286 1.91424 1.64736 1.68610 1.86107 1.21559 1.01510 0.90813 1.02635 1.21483 0.91184 1.00436 0.92735 1.21573 1.03487 0.94413 0.97871 1.17861 0.92105 0.94893 0.85356 1.91552 1.76018 1.93382 1.50541 1.75318 1.22215 1.03276 1.14364 1.78252 1.05381 1.09134 1.16664 0.92590 0.99011 0.98447 0.87522 0.84919 0.75491 0.80164 0.78903 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.98 42.64 29.54 68.60 2.03 44.66 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.55 -29.26 9.11 25.60 0.23 -29.02 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.02 1.19 5.10 29.85 0.15 1.34 16 10 C 0.12 4.75 6.39 86.38 0.55 5.30 16 11 N -0.27 -11.11 3.43 -346.83 -1.19 -12.30 16 12 C -0.03 -0.87 10.65 83.75 0.89 0.02 16 13 C -0.02 -0.70 6.97 41.05 0.29 -0.41 16 14 C -0.10 -2.82 5.89 -19.96 -0.12 -2.94 16 15 C 0.13 2.67 7.27 22.57 0.16 2.84 16 16 F -0.13 -2.81 14.35 44.97 0.65 -2.16 16 17 C -0.15 -1.73 10.01 22.29 0.22 -1.50 16 18 C -0.04 -0.35 10.03 22.29 0.22 -0.13 16 19 C -0.15 -2.32 10.01 22.29 0.22 -2.09 16 20 C 0.12 3.10 7.27 22.57 0.16 3.26 16 21 F -0.14 -4.52 15.84 44.97 0.71 -3.81 16 22 N -0.29 -12.75 11.17 -49.32 -0.55 -13.30 16 23 N -0.12 -5.40 12.88 37.02 0.48 -4.92 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.00 -0.17 8.12 -2.38 -0.02 -0.19 16 27 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.13 4.18 8.06 -2.39 -0.02 4.16 16 29 H 0.23 5.93 6.16 -2.91 -0.02 5.91 16 30 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 31 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -76.58 294.84 7.02 -69.56 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.16 Total: 1.92 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.46 Total: -22.85 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -0.98 Total: -87.32 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.36 Total: -5.97 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -76.58 7.02 -69.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594648822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.448 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds