Wall clock time and date at job start Tue Mar 31 2020 01:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48498 * 109.47513 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47132 * 300.00347 * 3 2 1 6 6 H 1.48505 * 109.46790 * 59.99717 * 3 2 1 7 7 C 1.37881 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46893 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.35211 * 125.74961 * 124.99720 * 11 10 9 13 13 C 1.36483 * 106.04786 * 180.02562 * 12 11 10 14 14 C 1.48451 * 126.90760 * 180.02562 * 13 12 11 15 15 C 1.39287 * 120.09247 * 359.72267 * 14 13 12 16 16 C 1.38262 * 119.90054 * 179.69886 * 15 14 13 17 17 F 1.35101 * 119.95095 * 180.32038 * 16 15 14 18 18 C 1.38495 * 120.09831 * 0.57854 * 16 15 14 19 19 C 1.38507 * 120.18956 * 359.71996 * 18 16 15 20 20 F 1.35100 * 119.95749 * 179.97438 * 19 18 16 21 21 C 1.38271 * 120.08729 * 359.97438 * 19 18 16 22 22 N 1.34505 * 106.18980 * 0.02562 * 13 12 11 23 23 N 1.28619 * 108.78208 * 359.97438 * 22 13 12 24 24 H 0.96995 * 119.99841 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47462 * 60.00228 * 9 7 2 26 26 H 1.09004 * 109.47097 * 300.00014 * 9 7 2 27 27 H 1.09005 * 109.47295 * 59.99819 * 10 9 7 28 28 H 1.08995 * 109.46971 * 299.99994 * 10 9 7 29 29 H 1.08001 * 126.97982 * 0.02562 * 12 11 10 30 30 H 1.07998 * 120.04388 * 359.97438 * 15 14 13 31 31 H 1.08000 * 119.91005 * 179.74325 * 18 16 15 32 32 H 1.07998 * 120.03906 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5130 -4.9308 0.0001 12 6 1.6628 -5.9298 -0.8986 13 6 0.7915 -6.9103 -0.5214 14 6 0.5776 -8.2184 -1.1901 15 6 1.3045 -8.5461 -2.3321 16 6 1.1066 -9.7680 -2.9481 17 9 1.8158 -10.0895 -4.0521 18 6 0.1786 -10.6606 -2.4381 19 6 -0.5508 -10.3362 -1.3063 20 9 -1.4553 -11.2103 -0.8131 21 6 -0.3546 -9.1190 -0.6804 22 7 0.1656 -6.4533 0.5779 23 7 0.6182 -5.2818 0.8552 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8722 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 2.3354 -5.9483 -1.7434 30 1 2.0249 -7.8485 -2.7332 31 1 0.0235 -11.6125 -2.9241 32 1 -0.9241 -8.8667 0.2019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594650419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:39 Heat of formation + Delta-G solvation = 2.870015 kcal Electronic energy + Delta-G solvation = -19854.264443 eV Core-core repulsion = 16258.998122 eV Total energy + Delta-G solvation = -3595.266320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04488 -50.00335 -44.25254 -39.82777 -36.75960 -34.86191 -33.59784 -31.93284 -31.32502 -30.42739 -27.41134 -25.23302 -24.53213 -23.68568 -22.56163 -21.69408 -19.30869 -18.76510 -18.00920 -17.67037 -17.41844 -17.32326 -16.97967 -16.57831 -16.47443 -16.32229 -15.98879 -15.38271 -15.26304 -14.97158 -14.33948 -13.86813 -13.68150 -13.31598 -13.07228 -13.00736 -12.90539 -12.61371 -12.48337 -12.29395 -12.05948 -11.78124 -11.42345 -11.13696 -10.84110 -10.63518 -9.82930 -9.49736 -8.26077 -6.39968 -0.37839 -0.07789 0.69508 1.41700 1.43281 1.47172 1.50399 1.57158 2.39882 2.49560 2.66733 3.08037 3.10082 3.24876 3.68179 3.77928 3.86726 3.93562 4.03497 4.08352 4.26409 4.40120 4.57561 4.67500 4.74080 4.88077 4.96510 5.07759 5.24421 5.30734 5.45164 5.53981 5.68489 5.76169 6.04668 6.77268 7.31596 7.45424 8.86602 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.003050 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.651867 B = 9177.353184 C = 9684.592075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.020 3.980 10 C 0.123 3.877 11 N -0.275 5.275 12 C -0.010 4.010 13 C -0.018 4.018 14 C 0.057 3.943 15 C -0.141 4.141 16 C 0.134 3.866 17 F -0.128 7.128 18 C -0.182 4.182 19 C 0.127 3.873 20 F -0.134 7.134 21 C -0.151 4.151 22 N -0.291 5.291 23 N -0.117 5.117 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.004 1.004 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.242 0.758 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 -19.348 -7.642 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.579 4.579 8 H 0.101 0.899 9 C -0.018 4.018 10 C 0.004 3.996 11 N -0.066 5.066 12 C -0.163 4.163 13 C -0.156 4.156 14 C 0.054 3.946 15 C -0.161 4.161 16 C 0.115 3.885 17 F -0.106 7.106 18 C -0.202 4.202 19 C 0.108 3.892 20 F -0.113 7.113 21 C -0.171 4.171 22 N -0.156 5.156 23 N -0.096 5.096 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.015 0.985 27 H 0.123 0.877 28 H 0.156 0.844 29 H 0.259 0.741 30 H 0.190 0.810 31 H 0.188 0.812 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.302 -18.788 -6.341 20.526 hybrid contribution 0.197 0.683 -0.640 0.956 sum 5.498 -18.105 -6.981 20.168 Atomic orbital electron populations 1.70139 1.08240 1.28015 1.50937 1.26032 0.95630 1.03800 0.94372 0.85290 0.79458 0.78213 0.77408 1.17421 1.20691 1.21094 1.21492 0.94231 0.90652 1.51486 0.89903 1.19177 0.94317 0.92342 0.95934 1.22628 0.94135 0.76290 1.06510 1.47890 1.25417 1.15813 1.17477 1.24364 1.04616 0.87797 0.99570 1.20500 1.00576 0.97111 0.97426 1.17041 0.95115 0.89096 0.93313 1.21267 1.02412 0.96950 0.95445 1.16956 0.92750 0.93692 0.85107 1.91557 1.76350 1.92811 1.49888 1.21236 0.98354 1.03036 0.97549 1.17086 0.90302 0.87707 0.94108 1.91531 1.64804 1.67891 1.87066 1.21247 1.00560 0.92937 1.02347 1.75202 1.22393 1.03376 1.14648 1.78310 1.05443 1.09071 1.16802 0.92708 0.98751 0.98515 0.87742 0.84414 0.74141 0.81010 0.81180 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 2 C 0.00 0.01 5.46 84.66 0.46 0.48 16 3 Si 0.97 41.26 29.54 68.60 2.03 43.28 16 4 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -27.44 9.11 25.60 0.23 -27.21 16 8 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.02 0.98 5.10 29.85 0.15 1.13 16 10 C 0.12 4.16 6.39 86.38 0.55 4.71 16 11 N -0.27 -9.35 3.43 -346.87 -1.19 -10.54 16 12 C -0.01 -0.26 10.96 83.76 0.92 0.65 16 13 C -0.02 -0.52 6.99 41.05 0.29 -0.23 16 14 C 0.06 1.30 5.87 -20.05 -0.12 1.18 16 15 C -0.14 -2.38 9.56 22.53 0.22 -2.16 16 16 C 0.13 2.20 7.29 22.34 0.16 2.36 16 17 F -0.13 -2.08 17.26 44.97 0.78 -1.30 16 18 C -0.18 -2.94 10.00 22.40 0.22 -2.72 16 19 C 0.13 2.56 7.29 22.34 0.16 2.73 16 20 F -0.13 -2.86 17.26 44.97 0.78 -2.09 16 21 C -0.15 -3.53 9.68 22.53 0.22 -3.32 16 22 N -0.29 -10.92 12.16 -49.31 -0.60 -11.52 16 23 N -0.12 -4.79 12.88 37.02 0.48 -4.32 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.00 -0.20 8.11 -2.38 -0.02 -0.22 16 27 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 28 H 0.14 3.54 8.06 -2.39 -0.02 3.52 16 29 H 0.24 3.27 7.40 -2.91 -0.02 3.25 16 30 H 0.17 1.90 7.12 -2.91 -0.02 1.88 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.14 3.55 7.90 -2.91 -0.02 3.53 16 Total: -1.00 -67.96 299.83 7.18 -60.78 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.16 Total: 3.00 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.47 Total: -22.40 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.03 Total: -81.28 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 1.55 Total: -3.39 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -67.96 7.18 -60.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.654 kcal (2) G-P(sol) polarization free energy of solvation -67.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds