Wall clock time and date at job start Tue Mar 31 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46795 * 269.99842 * 3 2 1 5 5 H 1.48506 * 109.47019 * 29.99451 * 3 2 1 6 6 H 1.48498 * 109.47307 * 149.99840 * 3 2 1 7 7 C 1.37884 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99482 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00254 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47383 * 179.97438 * 9 7 2 11 11 N 1.46492 * 109.47535 * 179.97438 * 10 9 7 12 12 C 1.35246 * 125.75576 * 125.00084 * 11 10 9 13 13 C 1.36488 * 106.04144 * 179.97438 * 12 11 10 14 14 C 1.48443 * 126.90337 * 180.02562 * 13 12 11 15 15 C 1.39279 * 120.11451 * 179.97438 * 14 13 12 16 16 C 1.38230 * 119.87872 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.94263 * 180.02562 * 16 15 14 18 18 C 1.38544 * 120.11710 * 0.02562 * 16 15 14 19 19 C 1.38259 * 120.23545 * 0.02562 * 18 16 15 20 20 C 1.38261 * 120.11718 * 359.69341 * 19 18 16 21 21 F 1.35099 * 120.05995 * 180.30721 * 20 19 18 22 22 N 1.34506 * 106.19043 * 359.97438 * 13 12 11 23 23 N 1.28614 * 108.79045 * 359.97438 * 22 13 12 24 24 H 0.96998 * 120.00567 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47089 * 59.99986 * 9 7 2 26 26 H 1.08997 * 109.46843 * 300.00143 * 9 7 2 27 27 H 1.09009 * 109.46887 * 59.99654 * 10 9 7 28 28 H 1.08998 * 109.47033 * 300.00406 * 10 9 7 29 29 H 1.07999 * 126.98008 * 359.97438 * 12 11 10 30 30 H 1.08001 * 120.06076 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.88727 * 179.97438 * 18 16 15 32 32 H 1.07995 * 119.94340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4865 -2.6365 0.0022 12 6 6.2768 -3.2653 0.9018 13 6 7.5617 -3.0020 0.5240 14 6 8.8012 -3.4706 1.1930 15 6 10.0476 -3.1154 0.6829 16 6 11.1988 -3.5540 1.3100 17 9 12.4084 -3.2099 0.8167 18 6 11.1142 -4.3460 2.4436 19 6 9.8794 -4.7023 2.9535 20 6 8.7218 -4.2642 2.3373 21 9 7.5159 -4.6080 2.8401 22 7 7.4790 -2.2336 -0.5768 23 7 6.2382 -2.0400 -0.8546 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.6585 -3.1509 -0.8876 28 1 3.6579 -3.1497 0.8924 29 1 5.9563 -3.8558 1.7473 30 1 10.1146 -2.4977 -0.2005 31 1 12.0160 -4.6870 2.9304 32 1 9.8190 -5.3202 3.8371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:33 Heat of formation + Delta-G solvation = 26.575056 kcal Electronic energy + Delta-G solvation = -20240.852176 eV Core-core repulsion = 16646.613783 eV Total energy + Delta-G solvation = -3594.238393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.25360 -49.17260 -43.01914 -38.98359 -35.38054 -33.15024 -32.55828 -30.78403 -30.38224 -29.32481 -25.95107 -24.30320 -23.25693 -22.05277 -21.62437 -20.30030 -18.11125 -17.79083 -17.38022 -17.02805 -16.32636 -16.13742 -15.95189 -15.58344 -15.35342 -14.68052 -14.39846 -14.13020 -14.07527 -13.72005 -13.30157 -12.90397 -12.76785 -12.41513 -11.99405 -11.73212 -11.40185 -11.31251 -10.87097 -10.84914 -10.39502 -10.17630 -10.03635 -9.63101 -9.52133 -9.05865 -8.73785 -8.43627 -6.25109 -4.28076 0.43657 0.69330 1.86889 2.53582 2.67268 3.22163 3.29677 3.32689 3.34119 3.75908 3.83304 4.07808 4.25637 4.29327 4.58441 4.73569 4.92428 5.01843 5.10484 5.15279 5.35245 5.54344 5.62956 5.67490 5.71553 5.79715 5.95946 6.05072 6.15833 6.45343 6.66749 6.94640 6.99577 7.47854 8.22627 8.66276 8.73677 9.34606 10.86897 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003579 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.387799 B = 7820.760876 C = 8234.257107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.078 0.922 9 C -0.021 4.021 10 C 0.119 3.881 11 N -0.270 5.270 12 C -0.025 4.025 13 C -0.016 4.016 14 C 0.012 3.988 15 C -0.106 4.106 16 C 0.094 3.906 17 F -0.134 7.134 18 C -0.130 4.130 19 C -0.119 4.119 20 C 0.096 3.904 21 F -0.128 7.128 22 N -0.264 5.264 23 N -0.068 5.068 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.198 0.802 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.213 -10.534 6.590 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.096 0.904 9 C -0.059 4.059 10 C 0.000 4.000 11 N -0.062 5.062 12 C -0.178 4.178 13 C -0.154 4.154 14 C 0.008 3.992 15 C -0.125 4.125 16 C 0.074 3.926 17 F -0.113 7.113 18 C -0.149 4.149 19 C -0.138 4.138 20 C 0.076 3.924 21 F -0.107 7.107 22 N -0.131 5.131 23 N -0.048 5.048 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.215 0.785 30 H 0.172 0.828 31 H 0.164 0.836 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 19.976 -9.508 5.281 22.745 hybrid contribution 0.070 0.247 0.993 1.025 sum 20.046 -9.262 6.274 22.957 Atomic orbital electron populations 1.69873 1.06260 1.27426 1.49456 1.24910 0.94735 0.99188 0.93820 0.86794 0.80243 0.83418 0.79020 1.19781 1.21019 1.19107 1.20769 0.87884 0.95122 1.53293 0.90377 1.19880 0.98106 0.89500 0.98397 1.22635 0.68742 1.03765 1.04853 1.47973 1.10923 1.30339 1.16934 1.24027 0.90335 1.03848 0.99608 1.19942 0.91649 1.05378 0.98386 1.17421 0.90962 0.97383 0.93393 1.21087 0.89241 1.00764 1.01438 1.17527 0.80478 0.99498 0.95075 1.91526 1.41998 1.90617 1.87127 1.21012 0.98793 0.99232 0.95865 1.20847 0.89995 1.01608 1.01335 1.17550 0.81024 0.99604 0.94254 1.91444 1.42458 1.90370 1.86420 1.75244 1.10398 1.14679 1.12779 1.78251 0.95547 1.16292 1.14715 0.92262 0.95743 0.94838 0.88217 0.87782 0.78512 0.82770 0.83619 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.53 -14.07 9.66 -34.44 -0.33 -14.40 16 8 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.02 -0.46 4.17 -27.89 -0.12 -0.58 16 10 C 0.12 2.10 6.39 -4.05 -0.03 2.08 16 11 N -0.27 -4.77 3.43 -60.98 -0.21 -4.98 16 12 C -0.03 -0.38 10.65 -16.68 -0.18 -0.56 16 13 C -0.02 -0.26 6.99 -83.12 -0.58 -0.84 16 14 C 0.01 0.15 5.88 -104.84 -0.62 -0.47 16 15 C -0.11 -1.22 9.68 -39.20 -0.38 -1.60 16 16 C 0.09 0.92 7.29 -39.47 -0.29 0.64 16 17 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 18 C -0.13 -0.99 10.02 -39.46 -0.40 -1.39 16 19 C -0.12 -0.93 10.01 -39.57 -0.40 -1.33 16 20 C 0.10 1.02 7.27 -39.11 -0.28 0.74 16 21 F -0.13 -1.40 14.35 2.25 0.03 -1.36 16 22 N -0.26 -4.83 12.16 33.06 0.40 -4.43 16 23 N -0.07 -1.33 12.88 60.35 0.78 -0.56 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 26 H 0.03 0.78 7.54 -51.93 -0.39 0.39 16 27 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 29 H 0.20 2.39 6.16 -52.49 -0.32 2.07 16 30 H 0.15 1.82 7.90 -52.49 -0.41 1.41 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 293.17 15.07 4.42 4.42 Total: -1.00 -30.53 293.17 -4.90 -35.43 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -2.78 Total: -2.60 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -3.69 Total: -15.67 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 1.74 Total: -35.44 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.07 Total: -2.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.53 -4.90 -35.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.009 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds