Wall clock time and date at job start Tue Mar 31 2020 00:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58199 * 2 1 4 4 C 1.53195 * 109.58724 * 239.71807 * 2 1 3 5 5 C 1.53039 * 109.31302 * 185.43291 * 4 2 1 6 6 F 1.39897 * 109.45744 * 301.34527 * 5 4 2 7 7 F 1.39892 * 109.45967 * 181.38653 * 5 4 2 8 8 C 1.53045 * 109.53591 * 61.36336 * 5 4 2 9 9 C 1.53192 * 109.31570 * 298.63753 * 8 5 4 10 10 N 1.46922 * 108.77521 * 54.63212 * 9 8 5 11 11 C 1.34780 * 120.63020 * 126.39034 * 10 9 8 12 12 O 1.21277 * 120.00351 * 185.07315 * 11 10 9 13 13 C 1.50699 * 119.99635 * 5.08448 * 11 10 9 14 14 S 1.81002 * 109.47183 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00326 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00446 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99558 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47142 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47144 * 210.00365 * 19 17 15 22 22 H 1.48506 * 109.47243 * 329.99941 * 19 17 15 23 23 H 1.09007 * 109.47125 * 183.87589 * 1 2 3 24 24 H 1.09001 * 109.47368 * 303.86986 * 1 2 3 25 25 H 1.09003 * 109.47437 * 63.87833 * 1 2 3 26 26 H 1.09000 * 109.49385 * 65.47693 * 4 2 1 27 27 H 1.09002 * 109.49627 * 305.38528 * 4 2 1 28 28 H 1.09001 * 109.49584 * 178.68414 * 8 5 4 29 29 H 1.09000 * 109.51972 * 58.60711 * 8 5 4 30 30 H 1.08994 * 109.58636 * 174.42224 * 9 8 5 31 31 H 1.09003 * 109.58154 * 294.84587 * 9 8 5 32 32 H 1.09001 * 109.47165 * 299.99375 * 13 11 10 33 33 H 1.08998 * 109.47817 * 59.99512 * 13 11 10 34 34 H 0.96997 * 119.99953 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 6 3.5679 -0.8433 -1.1730 6 9 4.1282 0.4353 -1.0822 7 9 4.0430 -1.4794 -2.3247 8 6 3.9604 -1.6607 0.0599 9 6 3.4685 -0.9436 1.3211 10 7 2.0254 -0.6991 1.1936 11 6 1.1722 -1.1083 2.1533 12 8 -0.0237 -0.9834 1.9950 13 6 1.7042 -1.7208 3.4232 14 16 0.3221 -2.1633 4.5049 15 6 1.2066 -2.8369 5.8717 16 1 2.2858 -2.8746 5.8509 17 6 0.5166 -3.3191 6.9754 18 7 -0.7986 -3.2735 7.0006 19 14 1.4544 -4.0339 8.4241 20 1 1.7592 -2.9546 9.3975 21 1 0.6273 -5.0762 9.0835 22 1 2.7223 -4.6392 7.9431 23 1 -0.3634 -1.0254 0.0695 24 1 -0.3634 0.5727 0.8533 25 1 -0.3634 0.4525 -0.9227 26 1 1.7637 -0.1654 -2.1372 27 1 1.6050 -1.7246 -1.2922 28 1 5.0450 -1.7624 0.0988 29 1 3.5042 -2.6490 0.0020 30 1 3.6576 -1.5684 2.1939 31 1 3.9920 0.0064 1.4288 32 1 2.2783 -2.6156 3.1823 33 1 2.3474 -1.0025 3.9315 34 1 -1.2809 -3.6108 7.7716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600446564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:12 Heat of formation + Delta-G solvation = -128.155338 kcal Electronic energy + Delta-G solvation = -20153.029611 eV Core-core repulsion = 16655.232806 eV Total energy + Delta-G solvation = -3497.796806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.20211 -47.19006 -40.21466 -36.85057 -33.45340 -32.46985 -32.12044 -29.14388 -27.49110 -25.51675 -24.73975 -22.58957 -21.42576 -19.22763 -17.73939 -17.50332 -16.88214 -16.68541 -16.21001 -16.16898 -15.46726 -14.83772 -14.20818 -14.12820 -13.89413 -13.55065 -13.48510 -13.16643 -13.12744 -12.83831 -12.56518 -12.49423 -12.32324 -11.98499 -11.83238 -11.61559 -11.23101 -11.09156 -11.05116 -10.79701 -10.66772 -9.84446 -9.10149 -8.81183 -8.66378 -8.27904 -6.54627 -6.25468 -3.96409 2.74918 2.92609 3.19841 3.21335 3.27375 3.46619 3.53734 3.78024 4.06443 4.12619 4.16853 4.47336 4.73878 4.84717 4.98709 5.10021 5.13766 5.25370 5.27040 5.35961 5.37662 5.52706 5.58885 5.69478 5.78088 5.80300 6.04968 6.17989 6.35770 6.70440 7.42338 7.55869 8.31220 8.46933 9.20096 10.81955 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.004183 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.514171 B = 6692.618180 C = 7287.639963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.171 4.171 5 C 0.289 3.711 6 F -0.199 7.199 7 F -0.202 7.202 8 C -0.175 4.175 9 C 0.111 3.889 10 N -0.622 5.622 11 C 0.537 3.463 12 O -0.503 6.503 13 C -0.155 4.155 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.641 5.024 -15.405 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.096 0.904 4 C -0.210 4.210 5 C 0.253 3.747 6 F -0.180 7.180 7 F -0.183 7.183 8 C -0.214 4.214 9 C -0.013 4.013 10 N -0.359 5.359 11 C 0.326 3.674 12 O -0.377 6.377 13 C -0.305 4.305 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.703 5.182 -15.553 18.113 hybrid contribution 2.324 -0.593 0.907 2.564 sum 10.028 4.590 -14.647 18.334 Atomic orbital electron populations 1.22220 0.91253 1.04708 1.01138 1.21156 0.96945 0.94966 0.82354 0.90405 1.23076 0.91607 1.05149 1.01182 1.21069 0.92514 0.77221 0.83873 1.92999 1.87229 1.41340 1.96426 1.93012 1.90213 1.82144 1.52949 1.22954 1.04191 1.00830 0.93377 1.21662 0.80913 1.01173 0.97565 1.48224 1.06920 1.59811 1.20984 1.20319 0.86279 0.77067 0.83778 1.90756 1.15201 1.53370 1.78372 1.23634 1.06650 1.02947 0.97303 1.85381 1.05005 1.79067 1.13780 1.22853 0.94972 1.46970 1.03656 0.90950 1.24983 0.95021 0.95331 0.98152 1.70011 1.06114 1.43827 1.30302 0.86175 0.79404 0.78755 0.81213 1.20243 1.20734 1.19690 0.90407 0.90111 0.93913 0.88449 0.88156 0.88178 0.88054 0.87714 0.90352 0.89313 0.89190 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.60 37.16 0.28 -1.50 16 2 C 0.15 1.75 3.28 -67.60 -0.22 1.53 16 3 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 4 C -0.17 -1.68 4.91 -26.61 -0.13 -1.81 16 5 C 0.29 2.92 2.10 -26.69 -0.06 2.87 16 6 F -0.20 -2.21 16.10 2.25 0.04 -2.18 16 7 F -0.20 -2.25 17.06 2.25 0.04 -2.22 16 8 C -0.17 -1.55 5.62 -26.61 -0.15 -1.70 16 9 C 0.11 1.13 6.12 -3.71 -0.02 1.10 16 10 N -0.62 -8.23 2.97 -165.22 -0.49 -8.72 16 11 C 0.54 9.42 7.63 -10.98 -0.08 9.34 16 12 O -0.50 -10.32 11.28 5.56 0.06 -10.26 16 13 C -0.15 -2.96 4.56 36.01 0.16 -2.80 16 14 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 15 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 16 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 19 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H 0.08 1.18 6.74 -51.92 -0.35 0.83 16 24 H 0.08 1.25 6.77 -51.93 -0.35 0.90 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.03 5.96 -51.93 -0.31 0.72 16 31 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.09 1.55 7.48 -51.92 -0.39 1.16 16 33 H 0.09 1.61 8.11 -51.92 -0.42 1.18 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -32.04 296.61 -6.71 -38.75 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.30 Total: -1.52 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.02 Total: -5.58 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.24 Total: -33.69 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.04 -6.71 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600446564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.405 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds