Wall clock time and date at job start Tue Mar 31 2020 00:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70187 * 2 1 4 4 C 1.53624 * 109.66542 * 120.59744 * 2 1 3 5 5 C 1.53045 * 109.23972 * 174.54982 * 4 2 1 6 6 F 1.39899 * 109.45677 * 178.48990 * 5 4 2 7 7 F 1.39897 * 109.44850 * 58.52391 * 5 4 2 8 8 C 1.53043 * 109.53752 * 298.50824 * 5 4 2 9 9 C 1.53193 * 109.31057 * 61.36599 * 8 5 4 10 10 N 1.46922 * 108.78008 * 305.36426 * 9 8 5 11 11 C 1.34777 * 120.63185 * 233.58919 * 10 9 8 12 12 O 1.21276 * 120.00095 * 174.91435 * 11 10 9 13 13 C 1.50693 * 119.99941 * 354.91447 * 11 10 9 14 14 S 1.81001 * 109.47256 * 180.02562 * 13 11 10 15 15 C 1.76196 * 99.99924 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00461 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99845 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99978 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99936 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47244 * 270.00045 * 19 17 15 21 21 H 1.48501 * 109.47378 * 30.00021 * 19 17 15 22 22 H 1.48503 * 109.47527 * 149.99957 * 19 17 15 23 23 H 1.09003 * 109.47232 * 176.11872 * 1 2 3 24 24 H 1.08999 * 109.47191 * 296.11828 * 1 2 3 25 25 H 1.09007 * 109.47800 * 56.12129 * 1 2 3 26 26 H 1.08996 * 109.63434 * 54.55983 * 4 2 1 27 27 H 1.08997 * 109.42784 * 294.41556 * 4 2 1 28 28 H 1.08997 * 109.49503 * 301.41684 * 8 5 4 29 29 H 1.09001 * 109.51809 * 181.33421 * 8 5 4 30 30 H 1.09004 * 109.58417 * 185.57470 * 9 8 5 31 31 H 1.09006 * 109.69942 * 65.22469 * 9 8 5 32 32 H 1.09002 * 109.47389 * 59.99789 * 13 11 10 33 33 H 1.08998 * 109.47411 * 300.00184 * 13 11 10 34 34 H 0.97002 * 120.00262 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7363 1.2452 5 6 3.5712 -0.8498 1.1675 6 9 4.0501 -1.4893 2.3159 7 9 4.1297 0.4298 1.0794 8 6 3.9615 -1.6627 -0.0691 9 6 3.4655 -0.9419 -1.3265 10 7 2.0225 -0.6994 -1.1946 11 6 1.1673 -1.1060 -2.1537 12 8 -0.0283 -0.9833 -1.9919 13 6 1.6969 -1.7132 -3.4272 14 16 0.3125 -2.1531 -4.5071 15 6 1.1945 -2.8206 -5.8787 16 1 2.2738 -2.8565 -5.8610 17 6 0.5022 -3.3004 -6.9819 18 7 1.1610 -3.7985 -8.0067 19 14 -1.3645 -3.2377 -7.0128 20 1 -1.9115 -4.4917 -6.4356 21 1 -1.8342 -2.0783 -6.2125 22 1 -1.8318 -3.0931 -8.4150 23 1 -0.3634 -1.0253 -0.0696 24 1 -0.3633 0.4524 0.9227 25 1 -0.3635 0.5729 -0.8532 26 1 1.6096 -1.7338 1.2888 27 1 1.7688 -0.1772 2.1386 28 1 3.5061 -2.6514 -0.0130 29 1 5.0460 -1.7635 -0.1113 30 1 3.6531 -1.5635 -2.2020 31 1 3.9875 0.0090 -1.4349 32 1 2.2726 -2.6081 -3.1912 33 1 2.3379 -0.9922 -3.9344 34 1 0.6773 -4.1335 -8.7779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600446573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:14 Heat of formation + Delta-G solvation = -127.556470 kcal Electronic energy + Delta-G solvation = -20198.356445 eV Core-core repulsion = 16700.585608 eV Total energy + Delta-G solvation = -3497.770837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.23148 -47.22091 -40.31573 -36.93733 -33.50933 -32.48204 -32.19464 -29.27381 -27.56711 -25.64790 -24.80066 -22.67080 -21.48993 -19.32405 -17.75738 -17.54066 -16.94892 -16.72618 -16.30176 -16.23116 -15.55691 -15.00967 -14.24617 -14.13359 -13.85032 -13.60821 -13.55321 -13.28066 -13.18061 -12.83926 -12.83259 -12.55115 -12.40723 -12.07947 -11.93254 -11.67852 -11.32121 -11.28020 -11.04382 -10.72099 -10.63757 -9.88759 -9.04271 -8.92608 -8.75303 -8.54530 -6.96804 -6.32708 -4.05018 2.56635 2.79871 3.05538 3.29855 3.45813 3.46986 3.53079 3.74111 4.01577 4.08738 4.29120 4.40750 4.55278 4.79919 4.81458 5.03576 5.06477 5.09766 5.20994 5.24085 5.30968 5.39608 5.48865 5.64039 5.66526 5.71884 5.91780 6.10100 6.26713 6.61603 7.31717 7.90150 8.33668 8.37478 9.13396 10.76517 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035070 B = 0.004341 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.221839 B = 6448.956608 C = 6962.934213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.150 3.850 3 H 0.080 0.920 4 C -0.171 4.171 5 C 0.289 3.711 6 F -0.202 7.202 7 F -0.199 7.199 8 C -0.174 4.174 9 C 0.109 3.891 10 N -0.621 5.621 11 C 0.536 3.464 12 O -0.505 6.505 13 C -0.126 4.126 14 S -0.141 6.141 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.097 3.903 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.235 1.235 22 H -0.274 1.274 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 6.528 18.153 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.098 0.902 4 C -0.210 4.210 5 C 0.253 3.747 6 F -0.183 7.183 7 F -0.180 7.180 8 C -0.213 4.213 9 C -0.014 4.014 10 N -0.358 5.358 11 C 0.324 3.676 12 O -0.380 6.380 13 C -0.276 4.276 14 S 0.086 5.914 15 C -0.670 4.670 16 H 0.106 0.894 17 C -0.112 4.112 18 N -0.516 5.516 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.159 1.159 22 H -0.199 1.199 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.494 6.643 18.220 19.705 hybrid contribution 1.062 -0.281 -0.271 1.132 sum 4.556 6.361 17.949 19.580 Atomic orbital electron populations 1.22221 0.91283 1.04664 1.01157 1.21270 0.96907 0.94970 0.82235 0.90231 1.23146 0.91655 1.05069 1.01138 1.21066 0.92445 0.77175 0.83992 1.93016 1.90089 1.81984 1.53185 1.93001 1.87298 1.41218 1.96449 1.22949 1.04311 1.00827 0.93241 1.21695 0.80708 1.01329 0.97716 1.48196 1.06982 1.59691 1.20887 1.20283 0.86292 0.77134 0.83864 1.90755 1.15243 1.53490 1.78481 1.23391 1.04528 1.03520 0.96203 1.84777 1.09545 1.80680 1.16425 1.22302 0.96241 1.46525 1.01931 0.89397 1.24705 0.99046 0.93314 0.94157 1.69934 1.36355 1.39025 1.06306 0.86739 0.85225 0.81131 0.78770 1.19214 1.15930 1.19920 0.90419 0.93858 0.90155 0.88138 0.88443 0.88023 0.88054 0.87633 0.90182 0.88591 0.88427 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.60 37.16 0.28 -1.40 16 2 C 0.15 1.65 3.30 -67.37 -0.22 1.43 16 3 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 4 C -0.17 -1.59 4.94 -26.38 -0.13 -1.72 16 5 C 0.29 2.81 2.10 -26.69 -0.06 2.75 16 6 F -0.20 -2.19 17.06 2.25 0.04 -2.15 16 7 F -0.20 -2.14 16.10 2.25 0.04 -2.10 16 8 C -0.17 -1.49 5.62 -26.61 -0.15 -1.63 16 9 C 0.11 1.06 6.12 -3.71 -0.02 1.04 16 10 N -0.62 -7.75 2.97 -164.97 -0.49 -8.24 16 11 C 0.54 8.87 7.62 -10.99 -0.08 8.78 16 12 O -0.51 -9.75 11.26 5.56 0.06 -9.69 16 13 C -0.13 -2.30 4.56 36.00 0.16 -2.13 16 14 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 15 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16 16 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 18 N -0.88 -26.12 13.97 55.49 0.78 -25.35 16 19 Si 0.86 21.35 27.74 -169.99 -4.71 16.64 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.08 1.11 6.73 -51.93 -0.35 0.76 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.17 6.77 -51.93 -0.35 0.82 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.11 0.99 5.96 -51.93 -0.31 0.68 16 31 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 32 H 0.10 1.61 7.48 -51.92 -0.39 1.22 16 33 H 0.10 1.68 8.11 -51.92 -0.42 1.25 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 293.94 15.07 4.43 4.43 Total: -1.00 -31.76 293.94 -6.19 -37.95 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.33 Total: -1.52 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 0.00 Total: -4.56 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.29 Total: -33.59 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.76 -6.19 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600446573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.604 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds