Wall clock time and date at job start Tue Mar 31 2020 00:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70187 * 2 1 4 4 C 1.53624 * 109.66542 * 120.59744 * 2 1 3 5 5 C 1.53045 * 109.23972 * 174.54982 * 4 2 1 6 6 F 1.39899 * 109.45677 * 178.48990 * 5 4 2 7 7 F 1.39897 * 109.44850 * 58.52391 * 5 4 2 8 8 C 1.53043 * 109.53752 * 298.50824 * 5 4 2 9 9 C 1.53193 * 109.31057 * 61.36599 * 8 5 4 10 10 N 1.46922 * 108.78008 * 305.36426 * 9 8 5 11 11 C 1.34777 * 120.63185 * 233.58919 * 10 9 8 12 12 O 1.21276 * 120.00095 * 174.91435 * 11 10 9 13 13 C 1.50693 * 119.99941 * 354.91447 * 11 10 9 14 14 S 1.81001 * 109.47256 * 180.02562 * 13 11 10 15 15 C 1.76196 * 99.99924 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00461 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99845 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99978 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99936 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47244 * 270.00045 * 19 17 15 21 21 H 1.48501 * 109.47378 * 30.00021 * 19 17 15 22 22 H 1.48503 * 109.47527 * 149.99957 * 19 17 15 23 23 H 1.09003 * 109.47232 * 176.11872 * 1 2 3 24 24 H 1.08999 * 109.47191 * 296.11828 * 1 2 3 25 25 H 1.09007 * 109.47800 * 56.12129 * 1 2 3 26 26 H 1.08996 * 109.63434 * 54.55983 * 4 2 1 27 27 H 1.08997 * 109.42784 * 294.41556 * 4 2 1 28 28 H 1.08997 * 109.49503 * 301.41684 * 8 5 4 29 29 H 1.09001 * 109.51809 * 181.33421 * 8 5 4 30 30 H 1.09004 * 109.58417 * 185.57470 * 9 8 5 31 31 H 1.09006 * 109.69942 * 65.22469 * 9 8 5 32 32 H 1.09002 * 109.47389 * 59.99789 * 13 11 10 33 33 H 1.08998 * 109.47411 * 300.00184 * 13 11 10 34 34 H 0.97002 * 120.00262 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7363 1.2452 5 6 3.5712 -0.8498 1.1675 6 9 4.0501 -1.4893 2.3159 7 9 4.1297 0.4298 1.0794 8 6 3.9615 -1.6627 -0.0691 9 6 3.4655 -0.9419 -1.3265 10 7 2.0225 -0.6994 -1.1946 11 6 1.1673 -1.1060 -2.1537 12 8 -0.0283 -0.9833 -1.9919 13 6 1.6969 -1.7132 -3.4272 14 16 0.3125 -2.1531 -4.5071 15 6 1.1945 -2.8206 -5.8787 16 1 2.2738 -2.8565 -5.8610 17 6 0.5022 -3.3004 -6.9819 18 7 1.1610 -3.7985 -8.0067 19 14 -1.3645 -3.2377 -7.0128 20 1 -1.9115 -4.4917 -6.4356 21 1 -1.8342 -2.0783 -6.2125 22 1 -1.8318 -3.0931 -8.4150 23 1 -0.3634 -1.0253 -0.0696 24 1 -0.3633 0.4524 0.9227 25 1 -0.3635 0.5729 -0.8532 26 1 1.6096 -1.7338 1.2888 27 1 1.7688 -0.1772 2.1386 28 1 3.5061 -2.6514 -0.0130 29 1 5.0460 -1.7635 -0.1113 30 1 3.6531 -1.5635 -2.2020 31 1 3.9875 0.0090 -1.4349 32 1 2.2726 -2.6081 -3.1912 33 1 2.3379 -0.9922 -3.9344 34 1 0.6773 -4.1335 -8.7779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600446573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:13 Heat of formation + Delta-G solvation = -147.146150 kcal Electronic energy + Delta-G solvation = -20199.205917 eV Core-core repulsion = 16700.585608 eV Total energy + Delta-G solvation = -3498.620309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.01855 -48.01572 -41.45400 -38.02822 -34.66318 -34.47111 -33.12187 -30.56119 -28.54493 -27.81471 -25.67604 -23.61130 -22.38324 -20.57970 -19.53046 -18.33992 -18.03556 -17.60846 -17.39225 -17.22648 -17.05452 -16.65562 -15.75334 -15.15659 -15.01560 -14.84680 -14.73624 -14.39461 -14.31519 -14.01585 -13.69052 -13.51808 -13.37672 -13.31238 -13.26188 -13.00698 -12.81968 -12.62680 -12.46658 -12.17793 -11.86066 -11.50809 -11.16137 -10.50359 -10.19285 -9.79713 -8.97960 -8.50634 -6.20946 0.98245 1.32092 1.45804 1.51324 1.53393 1.96739 2.25479 2.66079 2.73041 2.88081 3.00619 3.22799 3.33489 3.54600 3.67428 4.03033 4.08130 4.20262 4.25908 4.37945 4.41294 4.48266 4.54742 4.67668 4.73604 4.81641 4.92059 5.11773 5.28741 5.60679 5.71622 6.12607 6.18905 6.94924 7.08977 8.61740 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035070 B = 0.004341 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.221839 B = 6448.956608 C = 6962.934213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.149 3.851 3 H 0.092 0.908 4 C -0.165 4.165 5 C 0.288 3.712 6 F -0.207 7.207 7 F -0.204 7.204 8 C -0.170 4.170 9 C 0.103 3.897 10 N -0.610 5.610 11 C 0.538 3.462 12 O -0.539 6.539 13 C -0.112 4.112 14 S -0.173 6.173 15 C -0.528 4.528 16 H 0.063 0.937 17 C 0.047 3.953 18 N -0.918 5.918 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.236 1.236 22 H -0.261 1.261 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 7.119 19.843 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 H 0.110 0.890 4 C -0.204 4.204 5 C 0.252 3.748 6 F -0.188 7.188 7 F -0.185 7.185 8 C -0.208 4.208 9 C -0.020 4.020 10 N -0.345 5.345 11 C 0.326 3.674 12 O -0.416 6.416 13 C -0.263 4.263 14 S 0.054 5.946 15 C -0.676 4.676 16 H 0.081 0.919 17 C -0.158 4.158 18 N -0.556 5.556 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.160 1.160 22 H -0.186 1.186 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.900 7.244 19.934 21.565 hybrid contribution 1.089 -0.409 -0.673 1.344 sum 4.990 6.835 19.262 21.039 Atomic orbital electron populations 1.22048 0.92261 1.03002 1.01314 1.21391 0.96126 0.95696 0.82195 0.88987 1.23089 0.91421 1.05197 1.00679 1.21173 0.92467 0.77014 0.84147 1.93009 1.90150 1.82085 1.53597 1.92995 1.87398 1.41648 1.96467 1.22940 1.05593 1.00479 0.91825 1.21941 0.78867 1.02479 0.98664 1.48168 1.07776 1.58367 1.20213 1.19944 0.86160 0.77333 0.83988 1.90769 1.16613 1.55142 1.79106 1.23379 1.02062 1.04802 0.96046 1.84680 1.12824 1.80626 1.16470 1.22470 0.95473 1.46241 1.03422 0.91904 1.25537 1.03280 0.93095 0.93935 1.70014 1.38189 1.40242 1.07134 0.85883 0.80149 0.81136 0.79305 1.18736 1.15974 1.18556 0.92598 0.91237 0.92762 0.88010 0.86686 0.87659 0.86090 0.87267 0.88697 0.86921 0.87170 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 7.60 71.98 0.55 -2.48 16 2 C 0.15 2.94 3.30 45.12 0.15 3.09 16 3 H 0.09 1.66 7.92 -2.39 -0.02 1.64 16 4 C -0.17 -2.59 4.94 30.82 0.15 -2.44 16 5 C 0.29 4.74 2.10 30.62 0.06 4.80 16 6 F -0.21 -3.94 17.06 44.97 0.77 -3.17 16 7 F -0.20 -3.77 16.10 44.97 0.72 -3.05 16 8 C -0.17 -2.37 5.62 30.67 0.17 -2.20 16 9 C 0.10 1.71 6.12 86.36 0.53 2.24 16 10 N -0.61 -13.97 2.97 -794.22 -2.36 -16.32 16 11 C 0.54 17.18 7.62 87.65 0.67 17.85 16 12 O -0.54 -20.66 11.26 -3.02 -0.03 -20.69 16 13 C -0.11 -3.97 4.56 71.23 0.32 -3.65 16 14 S -0.17 -8.39 18.55 -56.49 -1.05 -9.44 16 15 C -0.53 -29.97 10.04 67.96 0.68 -29.29 16 16 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 17 C 0.05 2.70 5.50 84.86 0.47 3.17 16 18 N -0.92 -55.12 13.97 21.65 0.30 -54.81 16 19 Si 0.91 44.17 27.74 68.60 1.90 46.07 16 20 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.24 -11.35 6.74 99.48 0.67 -10.68 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 H 0.06 1.56 6.73 -2.39 -0.02 1.55 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.56 6.77 -2.38 -0.02 1.55 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.76 5.96 -2.39 -0.01 1.75 16 31 H 0.09 1.37 7.93 -2.38 -0.02 1.35 16 32 H 0.11 3.62 7.48 -2.39 -0.02 3.60 16 33 H 0.11 3.64 8.11 -2.40 -0.02 3.62 16 34 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -68.69 293.94 5.09 -63.60 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.07 Total: 6.71 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.76 Total: -8.91 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -2.05 Total: -71.14 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.03 Total: -20.69 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 1.49 Total: -6.22 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.44 kcal Total: -68.69 5.09 -63.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600446573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.542 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds