Wall clock time and date at job start Tue Mar 31 2020 00:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37099 * 120.00336 * 2 1 4 4 H 1.07995 * 119.99788 * 173.17332 * 3 2 1 5 5 C 1.38948 * 119.99988 * 353.17418 * 3 2 1 6 6 N 1.31418 * 119.99764 * 5.22017 * 5 3 2 7 7 Si 1.86796 * 120.00411 * 185.22061 * 5 3 2 8 8 H 1.48504 * 109.46930 * 0.02562 * 7 5 3 9 9 H 1.48491 * 109.47414 * 119.99905 * 7 5 3 10 10 H 1.48500 * 109.47144 * 240.00151 * 7 5 3 11 11 C 1.34783 * 119.99724 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99802 * 184.57645 * 11 2 1 13 13 C 1.50698 * 119.99839 * 4.58111 * 11 2 1 14 14 H 1.08993 * 109.70630 * 307.60706 * 13 11 2 15 15 C 1.53476 * 109.70700 * 68.19146 * 13 11 2 16 16 O 1.43166 * 108.23047 * 179.40957 * 15 13 11 17 17 C 1.36216 * 116.69430 * 313.68740 * 16 15 13 18 18 C 1.38676 * 119.33498 * 197.30320 * 17 16 15 19 19 C 1.38179 * 120.13791 * 180.26074 * 18 17 16 20 20 C 1.38695 * 120.05343 * 0.02856 * 19 18 17 21 21 O 1.35978 * 120.00454 * 180.21378 * 20 19 18 22 22 C 1.38615 * 119.99746 * 359.94584 * 20 19 18 23 23 C 1.38690 * 120.02535 * 359.95776 * 22 20 19 24 24 O 1.36112 * 119.34743 * 180.40089 * 23 22 20 25 25 H 1.09001 * 109.47309 * 183.86838 * 1 2 3 26 26 H 1.09003 * 109.46942 * 303.86927 * 1 2 3 27 27 H 1.09004 * 109.47132 * 63.86956 * 1 2 3 28 28 H 0.96998 * 119.99857 * 180.02562 * 6 5 3 29 29 H 1.08995 * 109.71420 * 59.71906 * 15 13 11 30 30 H 1.09003 * 109.70616 * 299.09098 * 15 13 11 31 31 H 1.07996 * 119.93429 * 0.28146 * 18 17 16 32 32 H 1.08003 * 119.97529 * 180.02562 * 19 18 17 33 33 H 0.96693 * 114.00139 * 269.73703 * 21 20 19 34 34 H 1.07994 * 119.98613 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2247 1.1905 0.1112 5 6 1.4632 2.3864 -0.1430 6 7 0.1495 2.3909 -0.1752 7 14 2.4066 3.9920 -0.2896 8 1 3.8645 3.7170 -0.2261 9 1 2.0817 4.6405 -1.5853 10 1 2.0235 4.8947 0.8256 11 6 2.1388 -1.1673 -0.0005 12 8 3.3488 -1.1690 0.0833 13 6 1.3889 -2.4702 -0.1053 14 1 0.6083 -2.5071 0.6545 15 6 0.7600 -2.5946 -1.4998 16 8 0.0688 -3.8465 -1.5694 17 6 0.7349 -4.9398 -1.1041 18 6 0.2955 -6.2058 -1.4611 19 6 0.9554 -7.3264 -0.9943 20 6 2.0595 -7.1878 -0.1664 21 8 2.7108 -8.2912 0.2889 22 6 2.5024 -5.9243 0.1925 23 6 1.8424 -4.7984 -0.2768 24 8 2.2940 -3.5642 0.0776 25 1 -0.3634 -1.0253 0.0693 26 1 -0.3633 0.5727 0.8533 27 1 -0.3633 0.4526 -0.9227 28 1 -0.3303 3.2279 -0.2754 29 1 1.5409 -2.5630 -2.2595 30 1 0.0570 -1.7771 -1.6603 31 1 -0.5641 -6.3161 -2.1056 32 1 0.6112 -8.3111 -1.2743 33 1 2.3736 -8.6278 1.1303 34 1 3.3618 -5.8166 0.8375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:17 Heat of formation + Delta-G solvation = -95.871050 kcal Electronic energy + Delta-G solvation = -21752.438776 eV Core-core repulsion = 18231.685486 eV Total energy + Delta-G solvation = -3520.753290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25237 -39.12781 -38.25244 -37.00994 -35.87530 -34.85535 -32.08372 -30.80949 -30.17743 -28.11107 -26.42357 -25.31120 -24.08354 -22.90285 -21.37947 -19.66739 -18.62895 -18.04541 -17.26999 -17.11370 -16.80858 -15.75543 -15.32892 -15.08199 -14.78954 -14.57361 -14.25758 -14.11831 -13.85341 -13.67369 -13.48909 -13.22443 -12.43205 -12.39687 -11.85792 -11.65818 -11.15085 -11.11373 -11.04360 -10.84237 -10.75959 -10.42093 -10.37092 -10.30036 -9.19753 -8.63903 -8.57108 -8.07473 -7.90683 -6.41839 -3.99069 1.15971 1.25943 2.94091 3.05763 3.17074 3.21333 3.28355 3.53908 3.58380 4.00492 4.21716 4.39043 4.66011 4.77564 4.95975 5.03590 5.11177 5.20176 5.30915 5.44565 5.53965 5.68011 5.82677 5.92547 6.08185 6.17512 6.31754 6.42722 6.86469 7.00064 7.19558 7.40868 7.44746 7.58744 7.86620 8.28670 8.99310 9.19873 9.71459 10.52613 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.004123 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.381811 B = 6789.200401 C = 7262.400754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.437 5.437 3 C -0.301 4.301 4 H 0.108 0.892 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.935 3.065 8 H -0.267 1.267 9 H -0.279 1.279 10 H -0.280 1.280 11 C 0.441 3.559 12 O -0.568 6.568 13 C 0.048 3.952 14 H 0.097 0.903 15 C 0.031 3.969 16 O -0.305 6.305 17 C 0.039 3.961 18 C -0.098 4.098 19 C -0.148 4.148 20 C 0.105 3.895 21 O -0.495 6.495 22 C -0.143 4.143 23 C 0.078 3.922 24 O -0.275 6.275 25 H 0.022 0.978 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.268 0.732 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.388 0.612 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 -13.918 -0.625 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 C -0.428 4.428 4 H 0.126 0.874 5 C -0.173 4.173 6 N -0.526 5.526 7 Si 0.761 3.239 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.227 3.773 12 O -0.451 6.451 13 C -0.013 4.013 14 H 0.115 0.885 15 C -0.044 4.044 16 O -0.219 6.219 17 C -0.006 4.006 18 C -0.117 4.117 19 C -0.167 4.167 20 C 0.060 3.940 21 O -0.305 6.305 22 C -0.162 4.162 23 C 0.032 3.968 24 O -0.188 6.188 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.244 0.756 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.753 -13.591 -1.112 14.143 hybrid contribution -0.134 0.956 0.407 1.048 sum -3.887 -12.634 -0.705 13.238 Atomic orbital electron populations 1.22031 0.80061 0.96406 1.05385 1.43632 1.06085 1.04263 1.61636 1.19903 0.93864 0.81622 1.47437 0.87379 1.25364 0.95870 0.99874 0.96208 1.70146 1.05951 1.27557 1.48922 0.85706 0.79778 0.80428 0.77947 1.19075 1.20464 1.20551 1.18870 0.87830 0.83142 0.87452 1.90572 1.13423 1.85953 1.55190 1.22961 0.92431 0.87785 0.98110 0.88534 1.23790 0.99108 0.84920 0.96612 1.86327 1.41621 1.14550 1.79427 1.19010 0.95327 0.88546 0.97712 1.20241 1.01491 0.88573 1.01410 1.21069 0.95851 0.98767 1.00962 1.17934 0.92665 0.85311 0.98079 1.84858 1.60041 1.42703 1.42852 1.20629 1.02790 0.89291 1.03486 1.18877 0.95295 0.86426 0.96225 1.86442 1.39992 1.11955 1.80388 0.95970 0.90346 0.90573 0.92092 0.89940 0.84833 0.84399 0.84720 0.75632 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.20 7.57 59.85 0.45 2.65 16 2 N -0.44 -10.76 3.03 -122.19 -0.37 -11.13 16 3 C -0.30 -8.08 9.56 -14.93 -0.14 -8.22 16 4 H 0.11 3.07 7.18 -52.49 -0.38 2.69 16 5 C 0.03 0.73 5.46 -17.47 -0.10 0.64 16 6 N -0.88 -21.93 9.46 55.50 0.52 -21.40 16 7 Si 0.94 19.99 29.56 -169.99 -5.02 14.97 16 8 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 C 0.44 10.76 7.01 -10.98 -0.08 10.68 16 12 O -0.57 -16.12 16.12 -14.10 -0.23 -16.35 16 13 C 0.05 0.94 2.55 -27.64 -0.07 0.87 16 14 H 0.10 1.74 7.09 -51.93 -0.37 1.37 16 15 C 0.03 0.54 6.19 37.40 0.23 0.77 16 16 O -0.30 -4.96 10.42 -33.23 -0.35 -5.31 16 17 C 0.04 0.62 6.49 -39.15 -0.25 0.37 16 18 C -0.10 -1.25 9.96 -39.44 -0.39 -1.64 16 19 C -0.15 -1.69 9.98 -39.43 -0.39 -2.08 16 20 C 0.10 1.32 6.70 -39.27 -0.26 1.06 16 21 O -0.49 -5.24 13.50 -19.67 -0.27 -5.51 16 22 C -0.14 -2.13 9.90 -39.28 -0.39 -2.52 16 23 C 0.08 1.35 6.49 -39.14 -0.25 1.09 16 24 O -0.27 -5.63 9.62 -47.04 -0.45 -6.08 16 25 H 0.02 0.39 4.80 -51.93 -0.25 0.14 16 26 H 0.08 1.77 7.07 -51.93 -0.37 1.40 16 27 H 0.08 1.66 7.03 -51.93 -0.37 1.29 16 28 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.13 2.11 6.11 -51.93 -0.32 1.80 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.39 2.10 9.06 45.56 0.41 2.52 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -31.69 289.84 -5.90 -37.58 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.46 Total: 5.21 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.65 Total: 3.66 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.16 Total: -32.54 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.29 Total: -33.25 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.69 -5.90 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.286 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds