Wall clock time and date at job start Tue Mar 31 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48501 * 109.47107 * 269.99995 * 3 2 1 5 5 H 1.48502 * 109.47161 * 29.99450 * 3 2 1 6 6 H 1.48497 * 109.47327 * 149.99740 * 3 2 1 7 7 C 1.37874 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.35353 * 126.75019 * 125.24591 * 10 9 7 12 12 N 1.35318 * 106.17129 * 180.12581 * 11 10 9 13 13 C 1.46503 * 125.86278 * 179.90518 * 12 11 10 14 14 C 1.50703 * 109.46898 * 124.71695 * 13 12 11 15 15 C 1.38428 * 120.02260 * 270.25088 * 14 13 12 16 16 F 1.35097 * 120.01368 * 0.02562 * 15 14 13 17 17 C 1.38469 * 119.97216 * 180.25296 * 15 14 13 18 18 C 1.38214 * 120.02656 * 359.46885 * 17 15 14 19 19 C 1.38213 * 120.04986 * 0.30305 * 18 17 15 20 20 C 1.38420 * 120.02829 * 89.99788 * 14 13 12 21 21 F 1.35102 * 120.00867 * 359.97438 * 20 14 13 22 22 N 1.28716 * 108.26481 * 359.64121 * 12 11 10 23 23 N 1.28634 * 110.18008 * 0.22473 * 22 12 11 24 24 H 0.97003 * 120.00715 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47319 * 59.99858 * 9 7 2 26 26 H 1.08997 * 109.46994 * 299.99740 * 9 7 2 27 27 H 1.07999 * 126.91526 * 0.02562 * 11 10 9 28 28 H 1.08992 * 109.47189 * 4.71655 * 13 12 11 29 29 H 1.08994 * 109.47106 * 244.70978 * 13 12 11 30 30 H 1.08002 * 119.98964 * 179.75098 * 17 15 14 31 31 H 1.07994 * 119.97619 * 180.27386 * 18 17 15 32 32 H 1.07990 * 119.98835 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0023 11 6 4.8744 -3.1702 -0.8827 12 7 5.0356 -4.4565 -0.4950 13 6 5.8811 -5.4530 -1.1572 14 6 6.8524 -6.0301 -0.1598 15 6 8.0890 -5.4364 0.0260 16 9 8.4256 -4.3389 -0.6864 17 6 8.9826 -5.9706 0.9389 18 6 8.6361 -7.0896 1.6724 19 6 7.3999 -7.6804 1.4911 20 6 6.5066 -7.1511 0.5750 21 9 5.2978 -7.7282 0.3987 22 7 4.3228 -4.6526 0.5587 23 7 3.7012 -3.5736 0.8811 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6798 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 5.3376 -2.6849 -1.7291 28 1 6.4326 -4.9795 -1.9693 29 1 5.2561 -6.2505 -1.5588 30 1 9.9491 -5.5099 1.0812 31 1 9.3320 -7.5029 2.3873 32 1 7.1303 -8.5550 2.0644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603204832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:37 Heat of formation + Delta-G solvation = 36.602036 kcal Electronic energy + Delta-G solvation = -20729.836357 eV Core-core repulsion = 17136.032767 eV Total energy + Delta-G solvation = -3593.803590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.40920 -49.25359 -42.58088 -39.25137 -35.17509 -33.26121 -31.56717 -31.20434 -30.70128 -28.08715 -27.02827 -23.38229 -23.12028 -22.79465 -21.23654 -20.03310 -18.50810 -17.70367 -17.11614 -16.78145 -16.56271 -15.98864 -15.93358 -15.55966 -15.51971 -14.75075 -14.37497 -14.08878 -13.88353 -13.47152 -13.13863 -12.91751 -12.38845 -12.22846 -12.18708 -12.00126 -11.81193 -11.09505 -10.62420 -10.59922 -10.08960 -9.84993 -9.49893 -9.40834 -9.29325 -9.13181 -8.51425 -8.24320 -5.97209 -3.95154 0.42645 0.58353 2.15003 2.62237 3.11556 3.33472 3.40827 3.42277 3.45134 3.48171 3.88438 3.98034 4.13791 4.35610 4.48791 4.69339 4.71167 4.96643 5.11920 5.28747 5.35091 5.40890 5.49816 5.57899 5.72243 5.72957 5.94893 6.20540 6.31836 6.87838 7.07318 7.11726 7.23862 7.75645 8.60498 9.10879 9.25201 9.61877 11.16359 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004124 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.972828 B = 6787.148236 C = 7288.826320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.060 3.940 10 C 0.039 3.961 11 C -0.077 4.077 12 N -0.304 5.304 13 C 0.167 3.833 14 C -0.188 4.188 15 C 0.151 3.849 16 F -0.125 7.125 17 C -0.171 4.171 18 C -0.049 4.049 19 C -0.169 4.169 20 C 0.169 3.831 21 F -0.117 7.117 22 N -0.099 5.099 23 N -0.252 5.252 24 H 0.263 0.737 25 H 0.037 0.963 26 H 0.031 0.969 27 H 0.183 0.817 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.105 -15.264 -1.641 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.098 4.098 11 C -0.225 4.225 12 N -0.099 5.099 13 C 0.045 3.955 14 C -0.191 4.191 15 C 0.131 3.869 16 F -0.103 7.103 17 C -0.190 4.190 18 C -0.068 4.068 19 C -0.188 4.188 20 C 0.148 3.852 21 F -0.095 7.095 22 N -0.078 5.078 23 N -0.119 5.119 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.200 0.800 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.463 -16.146 -0.633 26.865 hybrid contribution 0.575 1.675 -1.140 2.106 sum 22.038 -14.471 -1.774 26.423 Atomic orbital electron populations 1.69901 1.06238 1.26792 1.51074 1.24969 0.94753 0.98850 0.94744 0.86832 0.80486 0.83860 0.78476 1.20218 1.21232 1.18904 1.20925 0.88159 0.94870 1.50513 0.90569 1.18149 0.97752 0.84511 0.97504 1.22495 0.95873 0.99107 0.92348 1.23352 1.07910 0.85294 1.05951 1.47136 1.32295 1.09358 1.21097 1.20485 0.90714 0.91673 0.92643 1.19773 0.96044 0.98914 1.04354 1.17220 0.92828 0.84364 0.92455 1.91551 1.92266 1.50421 1.76110 1.21208 1.00853 0.98856 0.98049 1.20933 0.95439 0.93452 0.96932 1.21261 0.94400 1.03128 1.00016 1.17173 0.81313 0.91489 0.95186 1.91590 1.41334 1.82802 1.93802 1.78257 1.06681 1.21540 1.01275 1.75109 1.17416 0.95967 1.23452 0.92699 0.94456 0.95100 0.79987 0.86485 0.87209 0.83693 0.83603 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -15.07 9.64 -34.44 -0.33 -15.40 16 8 H 0.08 2.53 7.98 -52.49 -0.42 2.11 16 9 C 0.06 1.49 4.62 -29.03 -0.13 1.36 16 10 C 0.04 0.90 6.44 -82.77 -0.53 0.36 16 11 C -0.08 -1.41 11.49 -17.04 -0.20 -1.60 16 12 N -0.30 -5.23 3.43 -62.44 -0.21 -5.45 16 13 C 0.17 1.98 6.23 -5.19 -0.03 1.95 16 14 C -0.19 -2.14 5.26 -104.48 -0.55 -2.69 16 15 C 0.15 1.57 7.24 -39.43 -0.29 1.29 16 16 F -0.13 -1.39 16.48 2.25 0.04 -1.36 16 17 C -0.17 -1.34 10.02 -39.51 -0.40 -1.74 16 18 C -0.05 -0.33 10.04 -39.60 -0.40 -0.72 16 19 C -0.17 -1.39 10.03 -39.50 -0.40 -1.78 16 20 C 0.17 1.86 7.24 -39.43 -0.29 1.58 16 21 F -0.12 -1.49 16.48 2.25 0.04 -1.46 16 22 N -0.10 -2.09 12.92 60.35 0.78 -1.31 16 23 N -0.25 -6.18 12.40 33.29 0.41 -5.77 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.04 0.94 7.20 -51.93 -0.37 0.56 16 26 H 0.03 0.70 7.55 -51.93 -0.39 0.31 16 27 H 0.18 2.57 8.06 -52.49 -0.42 2.15 16 28 H 0.12 1.05 7.57 -51.93 -0.39 0.66 16 29 H 0.11 1.17 7.64 -51.93 -0.40 0.77 16 30 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -36.03 296.10 -4.85 -40.88 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -2.83 Total: -3.81 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.64 Total: -15.47 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.75 Total: -40.20 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.07 Total: -2.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.03 -4.85 -40.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603204832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.485 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds