Wall clock time and date at job start Tue Mar 31 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48501 * 109.47107 * 269.99995 * 3 2 1 5 5 H 1.48502 * 109.47161 * 29.99450 * 3 2 1 6 6 H 1.48497 * 109.47327 * 149.99740 * 3 2 1 7 7 C 1.37874 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.35353 * 126.75019 * 125.24591 * 10 9 7 12 12 N 1.35318 * 106.17129 * 180.12581 * 11 10 9 13 13 C 1.46503 * 125.86278 * 179.90518 * 12 11 10 14 14 C 1.50703 * 109.46898 * 124.71695 * 13 12 11 15 15 C 1.38428 * 120.02260 * 270.25088 * 14 13 12 16 16 F 1.35097 * 120.01368 * 0.02562 * 15 14 13 17 17 C 1.38469 * 119.97216 * 180.25296 * 15 14 13 18 18 C 1.38214 * 120.02656 * 359.46885 * 17 15 14 19 19 C 1.38213 * 120.04986 * 0.30305 * 18 17 15 20 20 C 1.38420 * 120.02829 * 89.99788 * 14 13 12 21 21 F 1.35102 * 120.00867 * 359.97438 * 20 14 13 22 22 N 1.28716 * 108.26481 * 359.64121 * 12 11 10 23 23 N 1.28634 * 110.18008 * 0.22473 * 22 12 11 24 24 H 0.97003 * 120.00715 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47319 * 59.99858 * 9 7 2 26 26 H 1.08997 * 109.46994 * 299.99740 * 9 7 2 27 27 H 1.07999 * 126.91526 * 0.02562 * 11 10 9 28 28 H 1.08992 * 109.47189 * 4.71655 * 13 12 11 29 29 H 1.08994 * 109.47106 * 244.70978 * 13 12 11 30 30 H 1.08002 * 119.98964 * 179.75098 * 17 15 14 31 31 H 1.07994 * 119.97619 * 180.27386 * 18 17 15 32 32 H 1.07990 * 119.98835 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0023 11 6 4.8744 -3.1702 -0.8827 12 7 5.0356 -4.4565 -0.4950 13 6 5.8811 -5.4530 -1.1572 14 6 6.8524 -6.0301 -0.1598 15 6 8.0890 -5.4364 0.0260 16 9 8.4256 -4.3389 -0.6864 17 6 8.9826 -5.9706 0.9389 18 6 8.6361 -7.0896 1.6724 19 6 7.3999 -7.6804 1.4911 20 6 6.5066 -7.1511 0.5750 21 9 5.2978 -7.7282 0.3987 22 7 4.3228 -4.6526 0.5587 23 7 3.7012 -3.5736 0.8811 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6798 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 5.3376 -2.6849 -1.7291 28 1 6.4326 -4.9795 -1.9693 29 1 5.2561 -6.2505 -1.5588 30 1 9.9491 -5.5099 1.0812 31 1 9.3320 -7.5029 2.3873 32 1 7.1303 -8.5550 2.0644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603204832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:37 Heat of formation + Delta-G solvation = 12.079831 kcal Electronic energy + Delta-G solvation = -20730.899719 eV Core-core repulsion = 17136.032767 eV Total energy + Delta-G solvation = -3594.866953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.17138 -50.11392 -44.11472 -39.94442 -36.45725 -35.21768 -33.24627 -32.52241 -31.36277 -29.89758 -28.10508 -25.15175 -23.97565 -23.85367 -22.63111 -21.56996 -19.27269 -18.93101 -18.49123 -18.33503 -17.64156 -16.94069 -16.69165 -16.54155 -16.39517 -16.28746 -15.65954 -15.51550 -15.13441 -14.78238 -14.35638 -13.98375 -13.88942 -13.80890 -13.10139 -12.92637 -12.85061 -12.51841 -12.46578 -12.38964 -11.90757 -11.65563 -11.47883 -10.97643 -10.74140 -10.19505 -9.91084 -9.82330 -8.24640 -6.30330 -0.29167 -0.09630 0.69426 1.40697 1.45221 1.53346 1.57065 1.71220 2.34574 2.40962 2.76366 3.05367 3.09348 3.26474 3.39933 3.64084 3.77783 3.93979 4.09551 4.17567 4.21082 4.35822 4.61598 4.66024 4.73739 4.92427 4.97426 5.03663 5.13120 5.29617 5.34505 5.60501 5.67016 5.72317 6.31736 6.74703 7.31469 7.65438 8.93339 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004124 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.972828 B = 6787.148236 C = 7288.826320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.520 4.520 8 H 0.016 0.984 9 C 0.068 3.932 10 C -0.007 4.007 11 C -0.046 4.046 12 N -0.287 5.287 13 C 0.154 3.846 14 C -0.206 4.206 15 C 0.135 3.865 16 F -0.132 7.132 17 C -0.165 4.165 18 C -0.035 4.035 19 C -0.168 4.168 20 C 0.139 3.861 21 F -0.136 7.136 22 N -0.115 5.115 23 N -0.308 5.308 24 H 0.267 0.733 25 H 0.035 0.965 26 H 0.061 0.939 27 H 0.231 0.769 28 H 0.151 0.849 29 H 0.118 0.882 30 H 0.171 0.829 31 H 0.187 0.813 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.100 -14.830 -2.154 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.558 4.558 8 H 0.035 0.965 9 C 0.029 3.971 10 C -0.145 4.145 11 C -0.196 4.196 12 N -0.082 5.082 13 C 0.035 3.965 14 C -0.209 4.209 15 C 0.115 3.885 16 F -0.110 7.110 17 C -0.184 4.184 18 C -0.053 4.053 19 C -0.186 4.186 20 C 0.119 3.881 21 F -0.115 7.115 22 N -0.093 5.093 23 N -0.175 5.175 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.248 0.752 28 H 0.169 0.831 29 H 0.136 0.864 30 H 0.189 0.811 31 H 0.205 0.795 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 25.484 -15.772 -1.147 29.992 hybrid contribution -0.610 1.330 -0.984 1.763 sum 24.874 -14.442 -2.131 28.842 Atomic orbital electron populations 1.70089 1.08657 1.28312 1.52545 1.26083 0.95706 1.03754 0.93807 0.85525 0.79370 0.77148 0.79778 1.17905 1.21193 1.16589 1.21124 0.91075 0.92859 1.50769 0.96508 1.17976 0.94138 0.86528 0.98485 1.22447 0.98731 0.98741 0.94571 1.23872 1.05403 0.85154 1.05197 1.47574 1.30949 1.10012 1.19655 1.21003 0.90766 0.91231 0.93487 1.19752 0.96493 0.99598 1.05061 1.17467 0.93132 0.84548 0.93391 1.91528 1.92284 1.50800 1.76432 1.21623 1.01321 0.98749 0.96670 1.21436 0.95098 0.92314 0.96454 1.21630 0.94457 1.03555 0.98984 1.17578 0.81404 0.92356 0.96742 1.91538 1.42637 1.83180 1.94125 1.78138 1.07576 1.20618 1.03016 1.75026 1.19481 0.97317 1.25642 0.92392 0.94738 0.92098 0.75230 0.83094 0.86361 0.81102 0.79541 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.48 13.96 21.45 0.30 -62.18 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.96 44.30 27.47 68.60 1.88 46.18 16 4 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.52 -32.10 9.64 25.60 0.25 -31.85 16 8 H 0.02 1.18 7.98 -2.91 -0.02 1.16 16 9 C 0.07 3.36 4.62 29.10 0.13 3.49 16 10 C -0.01 -0.31 6.44 41.60 0.27 -0.04 16 11 C -0.05 -1.61 11.49 83.49 0.96 -0.65 16 12 N -0.29 -9.63 3.43 -351.47 -1.21 -10.83 16 13 C 0.15 3.44 6.23 85.63 0.53 3.97 16 14 C -0.21 -4.41 5.26 -19.77 -0.10 -4.51 16 15 C 0.13 2.49 7.24 22.37 0.16 2.65 16 16 F -0.13 -2.61 16.48 44.97 0.74 -1.87 16 17 C -0.17 -2.02 10.02 22.32 0.22 -1.80 16 18 C -0.04 -0.33 10.04 22.26 0.22 -0.11 16 19 C -0.17 -2.37 10.03 22.32 0.22 -2.14 16 20 C 0.14 2.96 7.24 22.37 0.16 3.13 16 21 F -0.14 -3.54 16.48 44.97 0.74 -2.80 16 22 N -0.11 -4.95 12.92 37.02 0.48 -4.47 16 23 N -0.31 -15.69 12.40 -48.60 -0.60 -16.29 16 24 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 25 H 0.03 1.71 7.20 -2.39 -0.02 1.69 16 26 H 0.06 2.62 7.55 -2.39 -0.02 2.61 16 27 H 0.23 5.48 8.06 -2.91 -0.02 5.45 16 28 H 0.15 2.27 7.57 -2.39 -0.02 2.25 16 29 H 0.12 2.43 7.64 -2.39 -0.02 2.42 16 30 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 32 H 0.17 1.59 8.06 -2.92 -0.02 1.57 16 Total: -1.00 -84.72 296.10 6.94 -77.78 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.11 Total: 1.72 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 3.50 Total: -27.25 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -1.03 Total: -93.77 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 1.48 Total: -4.67 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -84.72 6.94 -77.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603204832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.864 kcal (2) G-P(sol) polarization free energy of solvation -84.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds