Wall clock time and date at job start Tue Mar 31 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35607 * 117.00212 * 2 1 4 4 C 1.38506 * 120.14117 * 359.97438 * 3 2 1 5 5 C 1.38250 * 120.27286 * 179.97438 * 4 3 2 6 6 C 1.38296 * 120.55818 * 359.97438 * 5 4 3 7 7 C 1.38462 * 120.27526 * 0.02735 * 6 5 4 8 8 O 1.35609 * 120.14332 * 179.97438 * 7 6 5 9 9 C 1.42901 * 117.00075 * 359.97438 * 8 7 6 10 10 C 1.50697 * 109.47043 * 180.02562 * 9 8 7 11 11 O 1.21293 * 120.00305 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00093 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00230 * 0.02562 * 13 12 10 15 15 C 1.38955 * 120.00173 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99680 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00333 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46832 * 60.00005 * 17 15 13 19 19 H 1.48497 * 109.47347 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47211 * 300.00536 * 17 15 13 21 21 C 1.40573 * 120.14059 * 179.72763 * 3 2 1 22 22 C 1.46425 * 120.26798 * 359.97438 * 21 3 2 23 23 O 1.21330 * 120.00230 * 0.02562 * 22 21 3 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99937 * 1 2 3 26 26 H 1.09004 * 109.46926 * 300.00058 * 1 2 3 27 27 H 1.08005 * 119.86081 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.71939 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.86762 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47471 * 300.00422 * 9 8 7 31 31 H 1.09002 * 109.46646 * 60.00315 * 9 8 7 32 32 H 0.97004 * 119.99969 * 0.02562 * 12 10 9 33 33 H 0.97004 * 119.99565 * 180.02562 * 16 15 13 34 34 H 1.08004 * 119.99606 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2933 2.3717 -0.0005 5 6 1.9181 3.6050 0.0000 6 6 3.2982 3.6939 0.0016 7 6 4.0717 2.5455 0.0021 8 8 5.4248 2.6358 0.0032 9 6 5.9873 3.9495 0.0031 10 6 7.4911 3.8520 0.0037 11 8 8.0284 2.7645 0.0037 12 7 8.2391 4.9731 0.0043 13 6 9.6072 4.8844 0.0054 14 1 10.0856 3.9161 0.0054 15 6 10.3784 6.0403 0.0055 16 7 9.7963 7.2185 0.0050 17 14 12.2425 5.9196 0.0062 18 1 12.6916 5.1887 -1.2060 19 1 12.8270 7.2846 0.0068 20 1 12.6907 5.1891 1.2190 21 6 3.4483 1.2852 0.0058 22 6 4.2545 0.0629 0.0124 23 8 3.7114 -1.0221 0.0124 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2147 2.3153 -0.0005 28 1 1.3235 4.5065 0.0000 29 1 3.7747 4.6632 0.0024 30 1 5.6587 4.4855 -0.8872 31 1 5.6573 4.4860 0.8927 32 1 7.8095 5.8428 0.0047 33 1 10.3346 8.0254 0.0047 34 1 5.3326 0.1271 0.0172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731157707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:35 Heat of formation + Delta-G solvation = -135.211568 kcal Electronic energy + Delta-G solvation = -20753.660186 eV Core-core repulsion = 17231.200963 eV Total energy + Delta-G solvation = -3522.459223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81003 -40.64945 -39.58600 -39.37238 -37.35717 -36.01361 -33.39957 -32.53519 -30.72001 -29.64129 -28.24354 -26.51845 -25.73597 -23.01211 -22.29494 -21.25225 -20.08853 -19.63722 -18.29077 -17.80055 -17.41018 -17.36731 -17.07424 -16.71075 -16.61474 -15.93958 -15.86770 -15.34252 -15.31344 -15.25364 -14.84869 -14.29776 -13.87969 -13.53274 -13.40321 -13.14455 -12.94535 -12.64282 -12.46494 -12.41956 -12.24379 -12.12171 -11.70116 -11.55247 -10.66190 -10.43911 -10.08440 -9.70614 -9.18724 -8.50752 -6.00070 -0.32927 0.37352 1.38935 1.42558 1.47672 1.50421 1.61538 1.92217 2.28030 2.48295 2.71094 3.15729 3.24486 3.35668 3.78734 3.89535 3.92058 4.12958 4.24553 4.25690 4.31286 4.37434 4.39315 4.51716 4.60720 4.73541 5.06028 5.16915 5.35410 5.38973 5.42865 5.90542 6.18384 6.34948 6.49692 6.53971 7.06736 7.44542 7.99850 8.65828 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.038819 B = 0.003333 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.123848 B = 8397.747250 C = 9098.420005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.315 6.315 3 C 0.207 3.793 4 C -0.261 4.261 5 C 0.010 3.990 6 C -0.266 4.266 7 C 0.208 3.792 8 O -0.305 6.305 9 C 0.062 3.938 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.557 5.557 13 C -0.338 4.338 14 H 0.080 0.920 15 C -0.005 4.005 16 N -0.913 5.913 17 Si 0.992 3.008 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.272 1.272 21 C -0.291 4.291 22 C 0.389 3.611 23 O -0.494 6.494 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.402 0.598 33 H 0.281 0.719 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 -1.094 -0.009 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.227 6.227 3 C 0.158 3.842 4 C -0.280 4.280 5 C -0.008 4.008 6 C -0.285 4.285 7 C 0.160 3.840 8 O -0.216 6.216 9 C -0.016 4.016 10 C 0.220 3.780 11 O -0.510 6.510 12 N -0.195 5.195 13 C -0.468 4.468 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.553 5.553 17 Si 0.815 3.185 18 H -0.197 1.197 19 H -0.193 1.193 20 H -0.197 1.197 21 C -0.294 4.294 22 C 0.251 3.749 23 O -0.371 6.371 24 H 0.131 0.869 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.184 0.816 28 H 0.193 0.807 29 H 0.178 0.822 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.276 -2.538 -0.008 20.435 hybrid contribution 0.801 0.651 -0.003 1.032 sum -19.476 -1.887 -0.011 19.567 Atomic orbital electron populations 1.23508 0.75828 1.05719 1.03104 1.86244 1.23846 1.26349 1.86262 1.19137 0.90128 0.85865 0.89042 1.21484 1.01761 0.91033 1.13698 1.21396 0.93218 0.98454 0.87704 1.21534 0.95643 0.97675 1.13617 1.19111 0.82024 0.93350 0.89546 1.86029 1.17741 1.31042 1.86783 1.22511 0.90302 0.82791 1.05950 1.20312 0.89232 0.84608 0.83812 1.90550 1.74813 1.28984 1.56699 1.41683 1.06254 1.07331 1.64202 1.19630 0.82016 0.94462 1.50658 0.90209 1.26005 1.04875 0.93935 0.95789 1.69639 1.38407 0.97977 1.49262 0.85005 0.76689 0.77797 0.78992 1.19740 1.19282 1.19745 1.19550 0.92422 0.94017 1.23361 1.23700 0.95314 0.86535 0.69340 1.90485 1.77436 1.31557 1.37588 0.86908 0.90625 0.90623 0.81635 0.80714 0.82196 0.86462 0.86449 0.76287 0.90985 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -8.23 8.57 -68.22 -0.58 -8.81 16 3 C 0.21 5.29 6.70 22.90 0.15 5.44 16 4 C -0.26 -4.47 9.02 22.34 0.20 -4.27 16 5 C 0.01 0.15 10.02 22.29 0.22 0.38 16 6 C -0.27 -5.37 9.02 22.34 0.20 -5.17 16 7 C 0.21 5.90 6.71 22.90 0.15 6.05 16 8 O -0.30 -10.53 8.85 -70.16 -0.62 -11.15 16 9 C 0.06 1.96 5.22 71.23 0.37 2.33 16 10 C 0.43 19.94 7.86 87.66 0.69 20.63 16 11 O -0.62 -34.95 16.08 15.97 0.26 -34.69 16 12 N -0.56 -26.96 5.29 -306.99 -1.62 -28.58 16 13 C -0.34 -18.53 9.68 84.04 0.81 -17.71 16 14 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 15 C -0.01 -0.26 5.50 84.93 0.47 0.21 16 16 N -0.91 -46.65 13.05 21.66 0.28 -46.37 16 17 Si 0.99 41.39 29.55 68.60 2.03 43.41 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C -0.29 -8.90 5.89 -20.00 -0.12 -9.02 16 22 C 0.39 13.51 11.18 69.95 0.78 14.30 16 23 O -0.49 -19.30 15.98 17.78 0.28 -19.02 16 24 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.08 0.73 7.66 -2.38 -0.02 0.71 16 27 H 0.17 1.66 6.28 -2.91 -0.02 1.65 16 28 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 29 H 0.16 2.48 6.28 -2.91 -0.02 2.46 16 30 H 0.12 2.91 7.66 -2.39 -0.02 2.89 16 31 H 0.12 2.91 7.66 -2.39 -0.02 2.89 16 32 H 0.40 17.78 7.90 -92.71 -0.73 17.05 16 33 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.11 3.62 7.63 -2.91 -0.02 3.59 16 Total: -1.00 -75.61 305.69 5.50 -70.11 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.42 Total: 20.65 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.05 Total: 14.44 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.34 Total: -74.95 kcal Atomic # 8 Polarization: -73.01 SS G_CDS: -0.66 Total: -73.67 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -75.61 5.50 -70.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731157707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.097 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds