Wall clock time and date at job start Tue Mar 31 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35644 * 116.99549 * 2 1 4 4 C 1.38706 * 120.15619 * 0.02562 * 3 2 1 5 5 C 1.38055 * 120.08808 * 179.97438 * 4 3 2 6 6 C 1.38561 * 120.40156 * 0.02562 * 5 4 3 7 7 C 1.37764 * 120.31352 * 359.96903 * 6 5 4 8 8 C 1.39769 * 119.90000 * 359.77564 * 7 6 5 9 9 C 1.47393 * 120.20127 * 180.25297 * 8 7 6 10 10 O 1.21511 * 120.00247 * 180.25666 * 9 8 7 11 11 O 1.34757 * 119.99621 * 0.25091 * 9 8 7 12 12 C 1.45209 * 116.99780 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46872 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99709 * 359.97438 * 13 12 11 15 15 N 1.34770 * 119.99843 * 179.97438 * 13 12 11 16 16 C 1.37091 * 120.00154 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00145 * 359.97438 * 16 15 13 18 18 C 1.38957 * 120.00359 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00046 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99712 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47413 * 89.99930 * 20 18 16 22 22 H 1.48496 * 109.47177 * 210.00316 * 20 18 16 23 23 H 1.48503 * 109.47372 * 330.00236 * 20 18 16 24 24 H 1.09002 * 109.47382 * 59.99849 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99835 * 1 2 3 26 26 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.95497 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.79654 * 179.97438 * 5 4 3 29 29 H 1.08010 * 119.84199 * 179.97438 * 6 5 4 30 30 H 1.07996 * 120.05224 * 180.02562 * 7 6 5 31 31 H 1.08993 * 109.46885 * 300.00174 * 12 11 9 32 32 H 1.08998 * 109.47152 * 60.00070 * 12 11 9 33 33 H 0.97008 * 120.00054 * 359.97438 * 15 13 12 34 34 H 0.97000 * 119.99588 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9205 3.6033 0.0011 6 6 3.3038 3.6840 0.0005 7 6 4.0672 2.5372 0.0001 8 6 3.4446 1.2858 0.0050 9 6 4.2550 0.0546 0.0102 10 8 3.7100 -1.0314 0.0097 11 8 5.6002 0.1335 0.0154 12 6 6.3340 -1.1196 0.0197 13 6 7.8139 -0.8350 0.0246 14 8 8.2110 0.3110 0.0239 15 7 8.6960 -1.8539 0.0297 16 6 10.0422 -1.5951 0.0346 17 1 10.3960 -0.5747 0.0340 18 6 10.9517 -2.6457 0.0393 19 7 12.2421 -2.3976 0.0446 20 14 10.3399 -4.4106 0.0396 21 1 10.1827 -4.8803 -1.3603 22 1 11.3209 -5.2744 0.7444 23 1 9.0296 -4.4803 0.7350 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2138 2.3194 0.0005 28 1 1.3301 4.5076 0.0011 29 1 3.7858 4.6506 0.0005 30 1 5.1450 2.6050 0.0001 31 1 6.0706 -1.6916 0.9093 32 1 6.0777 -1.6938 -0.8706 33 1 8.3782 -2.7705 0.0306 34 1 12.8770 -3.1310 0.0482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:41 Heat of formation + Delta-G solvation = -119.749186 kcal Electronic energy + Delta-G solvation = -20734.227975 eV Core-core repulsion = 17212.439252 eV Total energy + Delta-G solvation = -3521.788724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79605 -39.63228 -38.20929 -37.55762 -35.94281 -34.01622 -31.87257 -31.71693 -30.38959 -28.59197 -27.54024 -24.86309 -23.85233 -22.31572 -20.95291 -19.58981 -18.64278 -18.40594 -17.57318 -16.69870 -16.38052 -15.94343 -15.87366 -15.65184 -15.06593 -14.83946 -14.48158 -14.08930 -13.86105 -13.52814 -12.95570 -12.89691 -12.47587 -12.27020 -12.22822 -12.16225 -11.77041 -11.44078 -11.40466 -11.22939 -10.61681 -10.39587 -10.26607 -10.01503 -9.63784 -9.33171 -8.61693 -8.53103 -8.25591 -6.36033 -3.88613 0.58059 1.15057 2.61831 2.69746 2.96511 3.02222 3.06740 3.14970 3.58423 3.62946 4.07122 4.36597 4.50596 4.60056 4.79648 4.85535 4.87477 5.02363 5.12236 5.15392 5.20993 5.33592 5.44893 5.62902 5.64487 5.73228 5.88488 6.01986 6.19877 6.45727 6.60666 7.07288 7.48981 7.96765 8.05412 8.51924 8.87314 9.33778 9.70072 10.76369 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.003523 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.789159 B = 7946.359515 C = 8784.699163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.284 6.284 3 C 0.187 3.813 4 C -0.228 4.228 5 C -0.046 4.046 6 C -0.173 4.173 7 C -0.018 4.018 8 C -0.158 4.158 9 C 0.504 3.496 10 O -0.496 6.496 11 O -0.324 6.324 12 C 0.060 3.940 13 C 0.450 3.550 14 O -0.557 6.557 15 N -0.580 5.580 16 C -0.307 4.307 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.876 5.876 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.268 1.268 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.373 0.627 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.305 6.728 -0.110 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.195 6.195 3 C 0.140 3.860 4 C -0.247 4.247 5 C -0.064 4.064 6 C -0.191 4.191 7 C -0.036 4.036 8 C -0.160 4.160 9 C 0.349 3.651 10 O -0.385 6.385 11 O -0.239 6.239 12 C -0.018 4.018 13 C 0.235 3.765 14 O -0.439 6.439 15 N -0.221 5.221 16 C -0.436 4.436 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.516 5.516 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.206 0.794 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.853 6.870 -0.109 24.823 hybrid contribution -0.597 -1.524 0.016 1.637 sum -24.450 5.346 -0.093 25.028 Atomic orbital electron populations 1.23174 0.78523 1.04402 1.01252 1.86363 1.21005 1.25499 1.86604 1.19035 0.90533 0.85119 0.91361 1.21171 1.00248 0.91853 1.11393 1.21199 0.94850 0.97057 0.93308 1.21105 0.93670 0.98872 1.05467 1.21572 1.01625 0.90038 0.90412 1.18502 0.89395 0.92417 1.15642 1.20886 0.81415 0.89135 0.73692 1.90856 1.72924 1.29335 1.45387 1.86587 1.18253 1.35371 1.83693 1.22717 0.91487 0.83962 1.03592 1.19206 0.85704 0.86362 0.85268 1.90592 1.79320 1.20500 1.53494 1.42031 1.06873 1.06472 1.66686 1.19428 0.78180 0.97396 1.48566 0.86011 1.25030 0.95071 0.98486 0.97310 1.69614 1.00538 1.32829 1.48585 0.86680 0.79057 0.84698 0.79091 1.19420 1.19989 1.19318 0.92498 0.92491 0.87906 0.84659 0.85182 0.84822 0.83000 0.89438 0.89435 0.79377 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.69 8.57 -40.51 -0.35 -4.03 16 3 C 0.19 2.36 6.70 -38.67 -0.26 2.11 16 4 C -0.23 -2.09 9.03 -39.48 -0.36 -2.45 16 5 C -0.05 -0.38 10.03 -39.53 -0.40 -0.77 16 6 C -0.17 -1.64 10.02 -39.64 -0.40 -2.04 16 7 C -0.02 -0.23 9.61 -39.18 -0.38 -0.60 16 8 C -0.16 -2.29 5.89 -104.86 -0.62 -2.91 16 9 C 0.50 8.83 7.89 34.46 0.27 9.10 16 10 O -0.50 -9.44 14.95 -26.60 -0.40 -9.83 16 11 O -0.32 -6.18 9.01 -47.33 -0.43 -6.60 16 12 C 0.06 1.13 5.95 36.01 0.21 1.35 16 13 C 0.45 10.63 7.86 -10.99 -0.09 10.54 16 14 O -0.56 -15.41 16.08 -14.11 -0.23 -15.64 16 15 N -0.58 -14.02 5.09 -10.96 -0.06 -14.08 16 16 C -0.31 -8.69 10.16 -14.93 -0.15 -8.85 16 17 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 18 C 0.04 1.22 5.50 -17.47 -0.10 1.13 16 19 N -0.88 -25.40 13.96 55.50 0.77 -24.62 16 20 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 24 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 28 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.15 1.96 7.61 -52.49 -0.40 1.56 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 34 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -35.21 305.80 -5.48 -40.69 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.43 Total: 7.16 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.26 Total: 7.76 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.72 Total: -38.70 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.40 Total: -36.11 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.21 -5.48 -40.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.061 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds