Wall clock time and date at job start Tue Mar 31 2020 01:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48508 * 109.46970 * 240.00150 * 3 2 1 5 5 H 1.48500 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47389 * 119.99972 * 3 2 1 7 7 C 1.38951 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00028 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99713 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46675 * 179.97438 * 12 10 9 14 14 C 1.34736 * 116.99879 * 180.02562 * 13 12 10 15 15 O 1.21483 * 119.99874 * 359.97438 * 14 13 12 16 16 C 1.47582 * 119.99749 * 180.02562 * 14 13 12 17 17 C 1.41554 * 126.52025 * 180.02562 * 16 14 13 18 18 C 1.35346 * 105.50008 * 180.02562 * 17 16 14 19 19 C 1.50701 * 126.37811 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.51956 * 146.27832 * 19 18 17 21 21 C 1.52999 * 60.00190 * 107.47765 * 20 19 18 22 22 N 1.35044 * 107.24200 * 0.25702 * 18 17 16 23 23 H 0.96998 * 124.88135 * 179.74074 * 22 18 17 24 24 N 1.28468 * 110.24325 * 359.55395 * 22 18 17 25 25 H 0.97005 * 120.00136 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99935 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.47453 * 60.00099 * 12 10 9 28 28 H 1.08996 * 109.47281 * 299.99845 * 12 10 9 29 29 H 1.07997 * 127.24613 * 0.02562 * 17 16 14 30 30 H 1.09002 * 115.55088 * 0.57441 * 19 18 17 31 31 H 1.09001 * 117.49733 * 214.97195 * 20 19 18 32 32 H 1.08995 * 117.49577 * 359.97438 * 20 19 18 33 33 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 34 34 H 1.09004 * 117.51638 * 107.47550 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0032 13 8 2.1874 -5.9665 0.0037 14 6 1.6724 -7.2116 0.0037 15 8 0.4680 -7.3707 0.0038 16 6 2.5715 -8.3819 0.0048 17 6 2.1825 -9.7430 0.0044 18 6 3.3372 -10.4491 0.0063 19 6 3.4667 -11.9505 0.0063 20 6 4.6532 -12.5577 -0.7450 21 6 4.6350 -12.5588 0.7848 22 7 4.3516 -9.5576 0.0135 23 1 5.2935 -9.7892 0.0199 24 7 3.8898 -8.3588 0.0067 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 0.0024 27 1 0.6175 -4.9213 -0.8869 28 1 0.6168 -4.9201 0.8930 29 1 1.1763 -10.1353 0.0030 30 1 2.5274 -12.5035 -0.0054 31 1 4.4945 -13.5100 -1.2510 32 1 5.3402 -11.8712 -1.2398 33 1 5.3100 -11.8730 1.2968 34 1 4.4640 -13.5118 1.2857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:45 Heat of formation + Delta-G solvation = -42.968223 kcal Electronic energy + Delta-G solvation = -20197.735387 eV Core-core repulsion = 16711.568887 eV Total energy + Delta-G solvation = -3486.166500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.92401 -41.47187 -40.00392 -38.10433 -37.54105 -36.04334 -33.44153 -33.16179 -31.79070 -30.09561 -26.88275 -25.59683 -24.31387 -23.26322 -22.23988 -21.48923 -21.32283 -20.08511 -19.03092 -18.35840 -17.89414 -17.85157 -17.24079 -16.65388 -16.51959 -16.39376 -15.79640 -15.60509 -15.14521 -14.76259 -14.43892 -13.97613 -13.69553 -13.55534 -13.19707 -12.94025 -12.49442 -12.45493 -12.13143 -12.08922 -12.05367 -12.02683 -11.90826 -11.58186 -11.37182 -10.65029 -10.52996 -10.12567 -9.86598 -8.52444 -6.03311 0.11130 0.86848 1.17456 1.37364 1.42836 1.54480 1.85502 1.88758 1.94482 2.29916 2.95913 3.00104 3.12647 3.32148 3.38290 3.74462 3.87824 4.03617 4.07451 4.14473 4.18186 4.22241 4.44870 4.68449 4.77224 5.01399 5.10988 5.14887 5.19016 5.20722 5.36239 5.87356 5.92480 6.39466 6.50206 6.76144 7.02194 7.38753 7.93076 8.64418 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.052010 B = 0.002732 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.233839 B =10246.816865 C =10701.719310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.083 0.917 9 N -0.556 5.556 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.069 3.931 13 O -0.334 6.334 14 C 0.551 3.449 15 O -0.515 6.515 16 C -0.023 4.023 17 C -0.176 4.176 18 C 0.067 3.933 19 C -0.102 4.102 20 C -0.166 4.166 21 C -0.166 4.166 22 N -0.359 5.359 23 H 0.460 0.540 24 N -0.255 5.255 25 H 0.282 0.718 26 H 0.401 0.599 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.182 0.818 30 H 0.151 0.849 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -26.168 0.045 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.008 4.008 13 O -0.248 6.248 14 C 0.394 3.606 15 O -0.402 6.402 16 C -0.180 4.180 17 C -0.203 4.203 18 C -0.058 4.058 19 C -0.122 4.122 20 C -0.203 4.203 21 C -0.203 4.203 22 N -0.077 5.077 23 H 0.308 0.692 24 N -0.093 5.093 25 H 0.091 0.909 26 H 0.236 0.764 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.199 0.801 30 H 0.169 0.831 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.077 -25.227 0.045 25.949 hybrid contribution -0.582 0.605 -0.001 0.839 sum 5.495 -24.622 0.044 25.228 Atomic orbital electron populations 1.69668 1.06923 1.29839 1.48996 1.26144 0.96630 1.02583 0.95592 0.84902 0.77744 0.76042 0.79119 1.19517 1.19197 1.19508 1.19682 0.92924 0.83397 1.50867 0.89904 1.41712 1.09572 1.04061 1.64032 1.20072 0.88051 0.85384 0.84213 1.90533 1.15579 1.87674 1.56707 1.22635 0.90089 0.82208 1.05838 1.86685 1.40384 1.14566 1.83214 1.20007 0.86202 0.82171 0.72222 1.90813 1.15363 1.86744 1.47286 1.20698 0.89994 0.92679 1.14642 1.21645 1.00881 0.88637 1.09133 1.20941 0.86779 0.93600 1.04500 1.20705 0.97785 0.84847 1.08841 1.23229 0.98546 1.03629 0.94898 1.23233 0.98816 1.03621 0.94631 1.43427 1.11039 1.01730 1.51478 0.69229 1.73836 1.12013 1.05594 1.17854 0.90893 0.76441 0.87041 0.87030 0.80057 0.83121 0.85906 0.88646 0.88652 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.39 13.05 21.66 0.28 -49.11 16 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 3 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -29.60 5.29 -306.99 -1.62 -31.22 16 10 C 0.44 22.55 7.86 87.66 0.69 23.24 16 11 O -0.62 -37.34 16.08 15.76 0.25 -37.08 16 12 C 0.07 2.83 5.95 71.24 0.42 3.25 16 13 O -0.33 -14.27 9.77 -50.07 -0.49 -14.76 16 14 C 0.55 20.40 7.97 70.29 0.56 20.96 16 15 O -0.51 -19.31 16.72 19.89 0.33 -18.98 16 16 C -0.02 -0.74 7.17 42.43 0.30 -0.43 16 17 C -0.18 -4.01 10.73 22.42 0.24 -3.77 16 18 C 0.07 1.13 6.64 41.40 0.28 1.41 16 19 C -0.10 -0.87 6.26 -11.54 -0.07 -0.94 16 20 C -0.17 -0.86 10.22 30.59 0.31 -0.55 16 21 C -0.17 -0.87 10.22 30.60 0.31 -0.55 16 22 N -0.36 -6.83 6.80 -47.93 -0.33 -7.16 16 23 H 0.46 5.26 8.96 -219.99 -1.97 3.29 16 24 N -0.25 -7.63 12.24 -48.21 -0.59 -8.22 16 25 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 26 H 0.40 19.96 7.90 -92.71 -0.73 19.22 16 27 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 28 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 29 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -77.20 316.38 2.66 -74.54 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -1.53 Total: 23.25 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 4.33 Total: 23.81 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.26 Total: -95.71 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: 0.10 Total: -70.82 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -77.20 2.66 -74.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds