Wall clock time and date at job start Tue Mar 31 2020 00:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47513 * 119.99916 * 2 1 3 5 5 H 1.08002 * 119.99934 * 119.99307 * 4 2 1 6 6 C 1.37872 * 120.00001 * 300.00497 * 4 2 1 7 7 N 1.31510 * 120.00202 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00162 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47152 * 90.00264 * 8 6 4 10 10 H 1.48501 * 109.47393 * 210.00561 * 8 6 4 11 11 H 1.48503 * 109.46994 * 330.00327 * 8 6 4 12 12 O 1.45203 * 109.47135 * 239.99918 * 2 1 3 13 13 C 1.34753 * 116.99831 * 89.99887 * 12 2 1 14 14 O 1.21505 * 120.00020 * 0.02562 * 13 12 2 15 15 C 1.47451 * 119.99949 * 180.02562 * 13 12 2 16 16 C 1.39821 * 120.07795 * 180.02562 * 15 13 12 17 17 C 1.37636 * 119.91380 * 179.72782 * 16 15 13 18 18 C 1.39151 * 120.08820 * 0.24702 * 17 16 15 19 19 N 1.39413 * 119.92238 * 180.02562 * 18 17 16 20 20 C 1.34769 * 120.00413 * 324.85056 * 19 18 17 21 21 O 1.21509 * 119.99775 * 4.57779 * 20 19 18 22 22 O 1.34631 * 120.00424 * 184.58013 * 20 19 18 23 23 C 1.39154 * 120.15324 * 359.97438 * 18 17 16 24 24 C 1.37641 * 120.07990 * 0.02562 * 23 18 17 25 25 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46760 * 299.99723 * 1 2 3 27 27 H 1.08997 * 109.47141 * 60.00046 * 1 2 3 28 28 H 0.97004 * 120.00446 * 179.97438 * 7 6 4 29 29 H 1.07996 * 120.04030 * 359.97438 * 16 15 13 30 30 H 1.08004 * 119.95243 * 180.27408 * 17 16 15 31 31 H 0.97002 * 119.99534 * 144.85373 * 19 18 17 32 32 H 0.96703 * 117.00376 * 179.97438 * 22 20 19 33 33 H 1.07998 * 119.95688 * 180.02562 * 23 18 17 34 34 H 1.08000 * 120.03667 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9771 1.9953 3.9070 11 1 0.8489 2.1772 1.4923 12 8 2.0140 -0.6845 -1.1856 13 6 2.2179 0.0669 -2.2854 14 8 1.9977 1.2614 -2.2544 15 6 2.7082 -0.5605 -3.5264 16 6 2.9208 0.2177 -4.6684 17 6 3.3839 -0.3704 -5.8234 18 6 3.6355 -1.7386 -5.8571 19 7 4.1050 -2.3307 -7.0287 20 6 3.6852 -1.8791 -8.2271 21 8 2.9634 -0.9037 -8.2898 22 8 4.0656 -2.5087 -9.3547 23 6 3.4206 -2.5170 -4.7238 24 6 2.9577 -1.9356 -3.5653 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9033 -0.5280 4.4375 29 1 2.7258 1.2796 -4.6431 30 1 3.5526 0.2308 -6.7046 31 1 4.7338 -3.0678 -6.9813 32 1 3.7389 -2.1482 -10.1904 33 1 3.6174 -3.5784 -4.7534 34 1 2.7915 -2.5403 -2.6860 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736541346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:53 Heat of formation + Delta-G solvation = -134.131597 kcal Electronic energy + Delta-G solvation = -20744.635245 eV Core-core repulsion = 17222.222853 eV Total energy + Delta-G solvation = -3522.412392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22005 -39.93140 -38.74917 -36.60797 -35.92426 -35.18996 -33.20572 -31.18723 -30.81687 -29.88690 -25.32606 -24.84301 -23.27196 -22.28929 -21.38698 -19.90362 -19.50662 -17.94722 -17.86928 -17.08141 -16.64226 -16.33274 -16.17540 -15.34758 -14.87741 -14.57882 -14.30764 -14.05339 -13.58953 -13.26385 -13.12175 -12.79558 -12.56697 -12.30138 -12.08204 -11.89873 -11.54982 -11.39996 -11.03141 -10.89405 -10.56659 -10.23724 -10.03782 -9.77989 -9.61575 -9.13092 -9.11353 -8.69562 -8.47609 -6.23257 -4.25701 0.63907 1.29606 1.83324 2.26923 2.94119 3.19115 3.31464 3.33777 3.44495 3.84269 4.08363 4.26628 4.71877 4.81752 5.08074 5.13329 5.18532 5.28508 5.43358 5.84980 5.98936 6.01298 6.07880 6.16456 6.24921 6.27361 6.35218 6.46753 6.61815 6.74661 6.82847 7.01943 7.34274 7.49738 7.84569 8.21112 8.57310 8.83153 9.33879 10.88776 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.047733 B = 0.003317 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.461205 B = 8439.957727 C = 8804.666000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.047 0.953 4 C -0.525 4.525 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.262 1.262 12 O -0.336 6.336 13 C 0.497 3.503 14 O -0.518 6.518 15 C -0.125 4.125 16 C -0.040 4.040 17 C -0.134 4.134 18 C 0.175 3.825 19 N -0.646 5.646 20 C 0.665 3.335 21 O -0.556 6.556 22 O -0.522 6.522 23 C -0.153 4.153 24 C -0.040 4.040 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.269 0.731 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.420 0.580 32 H 0.434 0.566 33 H 0.136 0.864 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -4.573 -22.709 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.138 3.862 3 H 0.065 0.935 4 C -0.562 4.562 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.708 3.292 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.187 1.187 12 O -0.252 6.252 13 C 0.342 3.658 14 O -0.410 6.410 15 C -0.127 4.127 16 C -0.058 4.058 17 C -0.154 4.154 18 C 0.082 3.918 19 N -0.299 5.299 20 C 0.417 3.583 21 O -0.444 6.444 22 O -0.333 6.333 23 C -0.173 4.173 24 C -0.058 4.058 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.257 0.743 32 H 0.295 0.705 33 H 0.154 0.846 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.796 -3.974 -22.232 22.902 hybrid contribution -0.573 0.675 -0.241 0.918 sum 3.223 -3.299 -22.474 22.942 Atomic orbital electron populations 1.22527 0.98426 1.01921 0.99892 1.20951 0.90501 0.94524 0.80264 0.93525 1.20771 1.33402 1.14849 0.87208 0.89439 1.24722 0.95648 0.96730 0.95242 1.69832 1.44752 1.39954 0.98003 0.86973 0.80761 0.83664 0.77806 1.19977 1.21691 1.18650 1.86560 1.75805 1.42304 1.20497 1.21014 0.74865 0.85267 0.84648 1.90773 1.49095 1.16261 1.84833 1.19422 1.06128 0.94460 0.92648 1.21192 0.93741 1.00719 0.90179 1.21188 1.02229 0.92894 0.99101 1.17674 0.97763 0.91951 0.84421 1.41758 1.47788 1.38520 1.01792 1.17705 0.78380 0.80793 0.81382 1.91101 1.39734 1.27100 1.86436 1.84159 1.73030 1.59128 1.16990 1.20836 1.04172 0.99872 0.92415 1.21399 0.92885 0.93722 0.97823 0.91727 0.92509 0.94341 0.92052 0.84013 0.83561 0.74312 0.70534 0.84618 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.03 37.16 0.34 -3.57 16 2 C 0.19 4.83 2.16 -27.88 -0.06 4.77 16 3 H 0.05 1.25 6.22 -51.93 -0.32 0.92 16 4 C -0.52 -14.93 9.48 -34.44 -0.33 -15.26 16 5 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 6 C 0.08 2.28 5.45 -17.82 -0.10 2.19 16 7 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 8 Si 0.88 21.66 24.37 -169.99 -4.14 17.52 16 9 H -0.27 -6.45 6.87 56.52 0.39 -6.06 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 12 O -0.34 -7.63 9.10 -40.64 -0.37 -8.00 16 13 C 0.50 10.19 7.86 34.48 0.27 10.46 16 14 O -0.52 -11.77 15.60 -19.27 -0.30 -12.08 16 15 C -0.12 -2.00 5.88 -104.96 -0.62 -2.61 16 16 C -0.04 -0.56 9.58 -39.21 -0.38 -0.94 16 17 C -0.13 -1.68 8.66 -39.46 -0.34 -2.02 16 18 C 0.18 1.89 6.30 -83.73 -0.53 1.36 16 19 N -0.65 -5.22 5.32 -14.27 -0.08 -5.29 16 20 C 0.66 6.01 8.96 54.05 0.48 6.50 16 21 O -0.56 -6.98 14.54 -19.28 -0.28 -7.26 16 22 O -0.52 -2.87 13.48 -40.30 -0.54 -3.42 16 23 C -0.15 -1.58 9.94 -39.46 -0.39 -1.97 16 24 C -0.04 -0.53 9.60 -39.21 -0.38 -0.90 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.14 1.99 7.64 -52.49 -0.40 1.58 16 30 H 0.15 1.82 6.21 -52.48 -0.33 1.49 16 31 H 0.42 2.07 8.93 -40.82 -0.36 1.71 16 32 H 0.43 0.53 9.11 45.56 0.42 0.94 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.97 7.60 -52.49 -0.40 1.57 16 LS Contribution 299.46 15.07 4.51 4.51 Total: -1.00 -34.98 299.46 -4.89 -39.87 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -2.44 Total: 1.97 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.02 Total: -2.00 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.70 Total: -31.12 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.49 Total: -30.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.98 -4.89 -39.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736541346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.260 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds