Wall clock time and date at job start Tue Mar 31 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36907 * 119.99769 * 2 1 4 4 H 1.08000 * 119.99468 * 130.57436 * 3 2 1 5 5 C 1.39021 * 119.99800 * 310.57105 * 3 2 1 6 6 N 1.31387 * 119.99445 * 170.18998 * 5 3 2 7 7 Si 1.86796 * 120.00241 * 350.18786 * 5 3 2 8 8 H 1.48503 * 109.46910 * 94.75045 * 7 5 3 9 9 H 1.48501 * 109.47330 * 214.74704 * 7 5 3 10 10 H 1.48496 * 109.47290 * 334.75102 * 7 5 3 11 11 C 1.34777 * 120.00114 * 179.97438 * 2 1 3 12 12 O 1.21620 * 119.99909 * 2.03196 * 11 2 1 13 13 C 1.47492 * 119.99761 * 182.03032 * 11 2 1 14 14 C 1.39802 * 120.09156 * 137.65159 * 13 11 2 15 15 C 1.37679 * 119.90504 * 180.29375 * 14 13 11 16 16 C 1.39017 * 120.09527 * 359.45210 * 15 14 13 17 17 O 1.35713 * 119.90593 * 180.25233 * 16 15 14 18 18 C 1.42891 * 117.00321 * 0.29525 * 17 16 15 19 19 C 1.50705 * 109.47540 * 179.97438 * 18 17 16 20 20 O 1.20831 * 119.99229 * 0.02562 * 19 18 17 21 21 O 1.34222 * 120.00087 * 180.02562 * 19 18 17 22 22 C 1.39012 * 120.18533 * 0.55082 * 16 15 14 23 23 C 1.37688 * 120.09163 * 359.72461 * 22 16 15 24 24 H 1.08998 * 109.47305 * 264.69928 * 1 2 3 25 25 H 1.09001 * 109.47242 * 24.70137 * 1 2 3 26 26 H 1.09000 * 109.47183 * 144.70266 * 1 2 3 27 27 H 0.96999 * 119.99475 * 179.97438 * 6 5 3 28 28 H 1.07995 * 120.04722 * 0.02708 * 14 13 11 29 29 H 1.07998 * 119.95426 * 179.72105 * 15 14 13 30 30 H 1.08997 * 109.47625 * 299.99981 * 18 17 16 31 31 H 1.09002 * 109.47371 * 60.00262 * 18 17 16 32 32 H 0.96703 * 116.99708 * 180.02562 * 21 19 18 33 33 H 1.07997 * 119.95253 * 179.69701 * 22 16 15 34 34 H 1.08009 * 120.04170 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 2.9463 1.3491 0.7105 5 6 1.8188 2.1791 -0.9145 6 7 2.3363 3.3808 -0.7947 7 14 0.6389 1.8055 -2.3137 8 1 -0.7377 2.1981 -1.9184 9 1 1.0443 2.5699 -3.5206 10 1 0.6720 0.3517 -2.6143 11 6 2.1389 -1.1672 0.0005 12 8 1.5314 -2.2201 -0.0364 13 6 3.6131 -1.1675 0.0458 14 6 4.2890 -2.0755 0.8662 15 6 5.6651 -2.0684 0.9101 16 6 6.3827 -1.1676 0.1315 17 8 7.7392 -1.1674 0.1739 18 6 8.3616 -2.1231 1.0346 19 6 9.8590 -1.9751 0.9504 20 8 10.3433 -1.1366 0.2277 21 8 10.6544 -2.7745 1.6782 22 6 5.7146 -0.2630 -0.6856 23 6 4.3385 -0.2596 -0.7312 24 1 -0.3634 -0.0949 1.0232 25 1 -0.3634 0.9336 -0.4294 26 1 -0.3633 -0.8387 -0.5938 27 1 2.1059 4.0739 -1.4330 28 1 3.7325 -2.7787 1.4679 29 1 6.1879 -2.7665 1.5470 30 1 8.0366 -1.9537 2.0611 31 1 8.0785 -3.1293 0.7253 32 1 11.6083 -2.6417 1.5912 33 1 6.2757 0.4384 -1.2852 34 1 3.8202 0.4439 -1.3660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737387057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:58 Heat of formation + Delta-G solvation = -140.541937 kcal Electronic energy + Delta-G solvation = -21117.984594 eV Core-core repulsion = 17595.294229 eV Total energy + Delta-G solvation = -3522.690365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70105 -41.10215 -40.28663 -38.02480 -37.10042 -36.84288 -33.96031 -32.16757 -31.68639 -29.87779 -28.17926 -26.83046 -24.18843 -23.77274 -22.38152 -21.06163 -19.71804 -19.40953 -18.57356 -18.20551 -17.89576 -17.68616 -17.00703 -16.42065 -16.36649 -16.01897 -15.84289 -15.20703 -14.73114 -14.56159 -14.54612 -14.35254 -14.02323 -13.69078 -13.48775 -13.27513 -13.20021 -12.79485 -12.64762 -12.31159 -12.02333 -11.95230 -11.91562 -11.57030 -11.19042 -10.64715 -9.95772 -9.63955 -9.19255 -8.47905 -6.26194 0.14076 0.46339 1.07815 1.21442 1.29732 1.33170 1.43463 1.90897 2.18236 2.60216 2.68388 2.80385 3.04383 3.76842 3.98817 4.05859 4.07027 4.08092 4.21090 4.37864 4.42052 4.52213 4.56561 4.74409 4.77543 5.10980 5.20309 5.31865 5.46007 5.52646 5.63868 5.74092 6.08261 6.19983 6.31068 6.91334 6.92273 7.30775 7.69386 8.63855 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.004228 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.450249 B = 6620.390956 C = 7340.946520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.478 5.478 3 C -0.335 4.335 4 H 0.077 0.923 5 C 0.036 3.964 6 N -0.898 5.898 7 Si 0.927 3.073 8 H -0.255 1.255 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.524 3.476 12 O -0.615 6.615 13 C -0.163 4.163 14 C -0.040 4.040 15 C -0.205 4.205 16 C 0.145 3.855 17 O -0.315 6.315 18 C 0.054 3.946 19 C 0.492 3.508 20 O -0.543 6.543 21 O -0.498 6.498 22 C -0.171 4.171 23 C -0.023 4.023 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.281 0.719 28 H 0.139 0.861 29 H 0.178 0.822 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.437 0.563 33 H 0.134 0.866 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.644 -10.990 4.568 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.199 5.199 3 C -0.463 4.463 4 H 0.094 0.906 5 C -0.169 4.169 6 N -0.534 5.534 7 Si 0.752 3.248 8 H -0.180 1.180 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.315 3.685 12 O -0.502 6.502 13 C -0.166 4.166 14 C -0.059 4.059 15 C -0.224 4.224 16 C 0.100 3.900 17 O -0.229 6.229 18 C -0.021 4.021 19 C 0.335 3.665 20 O -0.433 6.433 21 O -0.313 6.313 22 C -0.189 4.189 23 C -0.041 4.041 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.195 0.805 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.300 0.700 33 H 0.152 0.848 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.189 -10.971 4.235 16.232 hybrid contribution -0.099 0.630 -0.724 0.964 sum 11.089 -10.342 3.511 15.564 Atomic orbital electron populations 1.21882 0.81750 1.01187 1.02234 1.43650 1.05216 1.05409 1.65581 1.18755 1.18832 0.90834 1.17859 0.90552 1.25944 0.97921 0.94600 0.98452 1.69727 1.44063 1.02561 1.37046 0.86079 0.80186 0.78884 0.79665 1.18024 1.20942 1.19332 1.18823 0.88289 0.83216 0.78181 1.90603 1.70975 1.32242 1.56377 1.19797 0.92495 1.00791 1.03468 1.21091 0.94219 0.95291 0.95341 1.21352 0.93803 1.02887 1.04316 1.19050 0.81003 0.94935 0.95022 1.85987 1.17238 1.56404 1.63227 1.22267 0.86108 0.95548 0.98147 1.22852 0.90474 0.77355 0.75863 1.90791 1.77348 1.35851 1.39341 1.84398 1.25647 1.57817 1.63390 1.20424 0.93291 1.01774 1.03452 1.21283 0.92801 0.93962 0.96100 0.91626 0.91932 0.91807 0.90916 0.84286 0.80514 0.84469 0.84211 0.69998 0.84809 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.06 8.82 127.77 1.13 4.19 16 2 N -0.48 -23.16 2.41 -662.57 -1.59 -24.75 16 3 C -0.33 -17.30 6.61 84.09 0.56 -16.75 16 4 H 0.08 4.32 7.49 -2.91 -0.02 4.30 16 5 C 0.04 1.84 5.16 84.95 0.44 2.28 16 6 N -0.90 -48.76 13.96 21.68 0.30 -48.46 16 7 Si 0.93 41.02 24.88 68.60 1.71 42.73 16 8 H -0.26 -10.51 6.89 99.48 0.69 -9.82 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.27 -12.25 7.03 99.48 0.70 -11.55 16 11 C 0.52 25.01 7.27 86.68 0.63 25.64 16 12 O -0.61 -31.08 16.61 -4.10 -0.07 -31.15 16 13 C -0.16 -6.80 5.28 -20.08 -0.11 -6.90 16 14 C -0.04 -1.34 9.65 22.52 0.22 -1.12 16 15 C -0.21 -5.26 9.01 22.32 0.20 -5.06 16 16 C 0.15 4.31 6.70 22.64 0.15 4.46 16 17 O -0.31 -8.42 9.66 -71.26 -0.69 -9.11 16 18 C 0.05 0.85 5.32 71.24 0.38 1.23 16 19 C 0.49 8.80 8.40 71.24 0.60 9.39 16 20 O -0.54 -15.20 17.26 28.38 0.49 -14.71 16 21 O -0.50 -4.91 13.42 -51.34 -0.69 -5.60 16 22 C -0.17 -6.10 9.97 22.33 0.22 -5.87 16 23 C -0.02 -0.94 8.09 22.52 0.18 -0.76 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.06 2.61 4.28 -2.39 -0.01 2.60 16 26 H 0.06 2.65 7.56 -2.39 -0.02 2.63 16 27 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.18 2.65 6.28 -2.91 -0.02 2.63 16 30 H 0.14 1.40 7.64 -2.39 -0.02 1.38 16 31 H 0.14 1.33 7.66 -2.39 -0.02 1.31 16 32 H 0.44 0.83 9.10 -74.06 -0.67 0.15 16 33 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.13 5.83 6.27 -2.91 -0.02 5.81 16 Total: -1.00 -72.29 298.36 4.52 -67.78 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.46 Total: 12.54 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.60 Total: 10.74 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -1.29 Total: -73.21 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -0.96 Total: -60.57 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.71 Total: 42.73 kcal Total: -72.29 4.52 -67.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737387057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.767 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds