Wall clock time and date at job start Tue Mar 31 2020 00:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47405 * 2 1 4 4 N 1.46501 * 109.47013 * 239.99386 * 2 1 3 5 5 C 1.34780 * 119.99510 * 85.00481 * 4 2 1 6 6 O 1.21590 * 120.00046 * 359.97438 * 5 4 2 7 7 C 1.47535 * 119.99849 * 180.02562 * 5 4 2 8 8 C 1.39666 * 120.19596 * 0.02562 * 7 5 4 9 9 C 1.37830 * 119.92216 * 179.97438 * 8 7 5 10 10 C 1.38580 * 120.32044 * 359.97438 * 9 8 7 11 11 C 1.38026 * 120.40073 * 0.02562 * 10 9 8 12 12 C 1.38831 * 120.07207 * 0.02562 * 11 10 9 13 13 O 1.35519 * 120.16246 * 180.02562 * 12 11 10 14 14 C 1.34818 * 117.00123 * 354.39673 * 13 12 11 15 15 H 1.08011 * 119.99422 * 5.06547 * 14 13 12 16 16 C 1.38693 * 120.00642 * 185.06428 * 14 13 12 17 17 N 1.31525 * 119.99570 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00271 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47267 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46910 * 119.99963 * 18 16 14 21 21 H 1.48494 * 109.47498 * 239.99910 * 18 16 14 22 22 C 1.50703 * 109.46791 * 119.99963 * 2 1 3 23 23 O 1.20823 * 120.00039 * 120.00498 * 22 2 1 24 24 O 1.34234 * 119.99914 * 299.99303 * 22 2 1 25 25 H 1.08997 * 109.46888 * 300.00528 * 1 2 3 26 26 H 1.08999 * 109.47105 * 60.00262 * 1 2 3 27 27 H 1.09004 * 109.47123 * 180.02562 * 1 2 3 28 28 H 0.96994 * 120.00085 * 265.00285 * 4 2 1 29 29 H 1.08003 * 120.04115 * 359.97438 * 8 7 5 30 30 H 1.07992 * 119.84383 * 180.02562 * 9 8 7 31 31 H 1.07999 * 119.79696 * 180.28209 * 10 9 8 32 32 H 1.07998 * 119.96126 * 180.02562 * 11 10 9 33 33 H 0.96998 * 119.99271 * 179.97438 * 17 16 14 34 34 H 0.96699 * 117.00077 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8576 1.1613 -2.4118 7 6 2.6383 -0.7141 -3.5618 8 6 2.9706 -2.0694 -3.5040 9 6 3.4284 -2.7139 -4.6330 10 6 3.5607 -2.0236 -5.8274 11 6 3.2362 -0.6840 -5.8996 12 6 2.7745 -0.0183 -4.7722 13 8 2.4548 1.2968 -4.8411 14 6 2.7167 1.9303 -6.0020 15 1 3.0852 1.3725 -6.8504 16 6 2.5129 3.2982 -6.1071 17 7 2.0646 3.9774 -5.0738 18 14 2.8764 4.1759 -7.7154 19 1 3.3670 3.1939 -8.7154 20 1 1.6361 4.8181 -8.2201 21 1 3.9143 5.2136 -7.4895 22 6 2.0323 -0.7104 1.2305 23 8 2.7270 -1.6928 1.1197 24 8 1.7081 -0.2517 2.4497 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6319 -1.1525 29 1 2.8689 -2.6119 -2.5756 30 1 3.6846 -3.7619 -4.5870 31 1 3.9159 -2.5381 -6.7081 32 1 3.3416 -0.1531 -6.8342 33 1 1.9225 4.9341 -5.1472 34 1 2.0541 -0.7404 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737689621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:06 Heat of formation + Delta-G solvation = -121.231762 kcal Electronic energy + Delta-G solvation = -21415.370272 eV Core-core repulsion = 17893.517259 eV Total energy + Delta-G solvation = -3521.853013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63881 -39.52053 -38.13274 -36.37256 -36.31756 -34.67979 -32.35647 -31.44970 -29.56369 -28.91796 -25.46607 -25.13840 -23.26181 -21.72489 -20.89784 -19.92854 -18.33111 -18.08369 -17.85561 -16.57623 -16.14211 -15.75497 -15.30241 -14.63452 -14.45509 -14.23135 -14.17199 -13.76775 -13.50224 -13.41961 -12.84793 -12.53779 -12.47577 -12.21734 -11.74815 -11.72913 -11.59591 -11.32817 -11.13860 -10.92273 -10.78785 -10.56386 -10.44977 -9.60470 -8.96146 -8.89567 -8.80203 -8.29080 -7.32607 -6.46345 -4.05979 1.68674 2.01543 2.31587 2.65482 3.11172 3.12138 3.17792 3.61945 3.70072 3.92365 4.60614 4.91838 5.03763 5.07494 5.15651 5.19792 5.43419 5.52446 5.67132 5.71883 5.83627 6.06171 6.11612 6.20982 6.28310 6.55775 6.66029 6.73924 6.90484 7.06090 7.22302 7.28512 7.67967 7.68409 7.89316 8.01920 8.92861 8.97750 9.65403 10.67613 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.005200 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.292013 B = 5383.697367 C = 6674.624051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.127 0.873 4 N -0.732 5.732 5 C 0.561 3.439 6 O -0.497 6.497 7 C -0.228 4.228 8 C -0.036 4.036 9 C -0.230 4.230 10 C -0.049 4.049 11 C -0.238 4.238 12 C 0.191 3.809 13 O -0.124 6.124 14 C -0.403 4.403 15 H 0.095 0.905 16 C 0.045 3.955 17 N -0.833 5.833 18 Si 0.941 3.059 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.480 3.520 23 O -0.513 6.513 24 O -0.510 6.510 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.402 0.598 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.271 0.729 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -9.382 8.262 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.144 0.856 4 N -0.392 5.392 5 C 0.351 3.649 6 O -0.371 6.371 7 C -0.233 4.233 8 C -0.055 4.055 9 C -0.249 4.249 10 C -0.068 4.068 11 C -0.257 4.257 12 C 0.131 3.869 13 O -0.022 6.022 14 C -0.479 4.479 15 H 0.112 0.888 16 C -0.163 4.163 17 N -0.464 5.464 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C 0.322 3.678 23 O -0.401 6.401 24 O -0.321 6.321 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.239 0.761 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.157 -8.080 8.074 11.481 hybrid contribution 0.650 -0.533 -0.258 0.879 sum -0.507 -8.613 7.816 11.641 Atomic orbital electron populations 1.22139 0.92106 1.02898 1.04430 1.20181 0.96044 0.98091 0.80594 0.85551 1.45807 1.70838 1.14395 1.08136 1.18232 0.77788 0.86666 0.82182 1.90956 1.47623 1.14544 1.83986 1.18712 1.17968 0.94449 0.92132 1.20812 0.94838 0.92225 0.97595 1.20478 1.11179 0.99562 0.93659 1.20916 0.95289 0.93642 0.96929 1.21156 1.09760 0.95412 0.99345 1.19248 0.90149 0.85822 0.91675 1.84164 1.66287 1.15529 1.36251 1.21553 1.46261 0.91311 0.88762 0.88789 1.25385 0.96225 0.95513 0.99192 1.70136 1.38704 1.08314 1.29268 0.85654 0.78476 0.79430 0.79893 1.18962 1.20014 1.20013 1.23670 0.76677 0.82385 0.85096 1.90706 1.35859 1.26384 1.87133 1.84530 1.72093 1.58928 1.16553 0.90552 0.89810 0.92143 0.76093 0.86877 0.87185 0.87122 0.85003 0.91903 0.73070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.42 37.16 0.35 -1.62 16 2 C 0.16 2.27 3.09 -69.08 -0.21 2.05 16 3 H 0.13 1.98 7.58 -51.93 -0.39 1.58 16 4 N -0.73 -12.22 4.90 -55.97 -0.27 -12.49 16 5 C 0.56 12.15 7.73 -12.47 -0.10 12.06 16 6 O -0.50 -13.07 14.83 -16.57 -0.25 -13.31 16 7 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 8 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 9 C -0.23 -3.82 10.03 -39.60 -0.40 -4.22 16 10 C -0.05 -0.87 10.03 -39.53 -0.40 -1.26 16 11 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 12 C 0.19 4.70 6.66 -38.60 -0.26 4.44 16 13 O -0.12 -3.62 7.84 -21.06 -0.17 -3.78 16 14 C -0.40 -11.28 9.49 30.90 0.29 -10.99 16 15 H 0.09 2.39 5.21 -52.48 -0.27 2.12 16 16 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 17 N -0.83 -24.78 13.67 55.48 0.76 -24.02 16 18 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 22 C 0.48 6.01 7.69 36.01 0.28 6.28 16 23 O -0.51 -7.55 16.60 -18.75 -0.31 -7.86 16 24 O -0.51 -4.67 13.33 -39.27 -0.52 -5.19 16 25 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.40 6.01 5.82 -40.82 -0.24 5.77 16 29 H 0.11 1.62 6.40 -52.48 -0.34 1.29 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.41 1.87 9.10 45.56 0.41 2.28 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -35.11 304.81 -5.45 -40.56 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -2.37 Total: 10.33 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.89 Total: -4.13 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.48 Total: -36.51 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.25 Total: -30.15 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.11 -5.45 -40.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737689621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.669 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds