Wall clock time and date at job start Tue Mar 31 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47158 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47350 * 30.00043 * 3 2 1 6 6 H 1.48505 * 109.47116 * 150.00125 * 3 2 1 7 7 C 1.37881 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97705 * 124.98359 * 10 9 7 12 12 C 1.35238 * 107.86346 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86643 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97643 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99807 * 0.02562 * 14 13 12 16 16 O 1.21294 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00035 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.55273 * 34.27587 * 17 15 14 19 19 C 1.53000 * 117.49789 * 248.60217 * 17 15 14 20 20 C 1.52998 * 60.00232 * 252.51228 * 19 17 15 21 21 H 1.08995 * 117.49718 * 107.49017 * 20 19 17 22 22 C 1.50705 * 117.49719 * 252.51053 * 20 19 17 23 23 O 1.20825 * 119.99614 * 68.62090 * 22 20 19 24 24 O 1.34224 * 119.99795 * 248.62375 * 22 20 19 25 25 N 1.31224 * 108.05286 * 359.97438 * 13 12 11 26 26 H 0.96995 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47270 * 60.00059 * 9 7 2 28 28 H 1.08995 * 109.47054 * 299.99939 * 9 7 2 29 29 H 1.07999 * 126.06888 * 0.05322 * 11 10 9 30 30 H 1.07998 * 126.07029 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00507 * 179.97438 * 14 13 12 32 32 H 1.09000 * 117.49814 * 0.02562 * 19 17 15 33 33 H 1.09003 * 117.49568 * 144.99515 * 19 17 15 34 34 H 0.96698 * 116.99701 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0013 11 6 4.8549 -3.1131 -0.8964 12 6 5.0555 -4.4058 -0.5537 13 6 4.2942 -4.6697 0.5963 14 7 4.2225 -5.8950 1.2729 15 6 4.9269 -6.9537 0.8264 16 8 5.6227 -6.8461 -0.1613 17 6 4.8493 -8.2713 1.5535 18 1 3.8828 -8.5059 1.9996 19 6 6.1023 -8.7450 2.2929 20 6 5.6721 -9.4349 0.9968 21 1 6.2696 -9.2474 0.1047 22 6 5.0843 -10.8182 1.1069 23 8 4.0018 -10.9754 1.6200 24 8 5.7633 -11.8755 0.6349 25 7 3.6617 -3.5685 0.9268 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6797 -0.8894 29 1 5.3003 -2.6017 -1.7370 30 1 5.6888 -5.1103 -1.0723 31 1 3.6664 -5.9809 2.0631 32 1 6.9825 -8.1034 2.2537 33 1 5.9600 -9.2912 3.2254 34 1 5.3455 -12.7426 0.7278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739075373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:56 Heat of formation + Delta-G solvation = -10.297648 kcal Electronic energy + Delta-G solvation = -20346.404591 eV Core-core repulsion = 16861.654793 eV Total energy + Delta-G solvation = -3484.749798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12508 -40.62428 -39.50814 -36.98073 -36.07310 -34.84240 -33.30954 -31.33275 -29.47193 -27.54757 -26.28356 -24.63819 -22.57703 -21.70586 -20.90988 -19.98984 -19.66282 -18.65102 -17.66404 -17.11747 -16.82688 -16.26044 -16.01876 -15.52967 -15.28969 -14.66825 -14.48051 -14.15791 -13.62309 -13.21960 -12.86851 -12.72697 -12.55088 -12.37772 -12.18993 -11.99358 -11.29172 -11.24568 -11.11518 -10.94306 -10.78918 -10.69507 -10.12671 -10.03662 -9.75222 -9.55590 -8.78403 -8.25495 -7.59390 -6.25112 -4.27764 1.62282 2.04504 2.31629 2.74789 2.80660 3.14242 3.20951 3.22879 3.28537 3.64708 3.70074 4.06450 4.21301 4.28433 4.49869 4.76711 4.89018 5.02360 5.14419 5.38296 5.47589 5.48874 5.65171 6.07887 6.11672 6.33277 6.38650 6.49668 6.62484 7.21424 7.27444 7.48495 7.50307 7.76651 8.10221 8.31010 8.50522 8.84504 9.29520 10.87602 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043678 B = 0.002928 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.902325 B = 9561.053266 C = 9876.281715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.622 5.622 15 C 0.551 3.449 16 O -0.515 6.515 17 C -0.152 4.152 18 H 0.144 0.856 19 C -0.113 4.113 20 C -0.137 4.137 21 H 0.153 0.847 22 C 0.513 3.487 23 O -0.512 6.512 24 O -0.509 6.509 25 N -0.294 5.294 26 H 0.268 0.732 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.415 0.585 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.902 -17.961 3.187 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.269 5.269 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.174 4.174 18 H 0.162 0.838 19 C -0.151 4.151 20 C -0.156 4.156 21 H 0.170 0.830 22 C 0.355 3.645 23 O -0.400 6.400 24 O -0.321 6.321 25 N -0.125 5.125 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.187 0.813 30 H 0.179 0.821 31 H 0.251 0.749 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 13.265 -16.745 3.401 21.631 hybrid contribution 0.058 -0.030 -0.207 0.218 sum 13.323 -16.775 3.193 21.659 Atomic orbital electron populations 1.69871 1.06172 1.27339 1.49047 1.24837 0.94874 0.98816 0.94233 0.86902 0.80425 0.83812 0.78932 1.19691 1.20513 1.18856 1.21104 0.87754 0.95736 1.52784 0.89634 1.20064 0.97496 0.72908 0.98250 1.48643 1.32349 1.10295 1.18649 1.22569 0.95865 0.94665 0.96668 1.21534 1.11514 0.96789 1.01618 1.19094 0.99154 0.86551 0.94752 1.42281 1.47036 1.07218 1.30346 1.19329 0.79273 0.83591 0.84188 1.90658 1.39536 1.83411 1.25318 1.22221 0.99980 0.91518 1.03640 0.83818 1.23153 0.97276 1.00588 0.94056 1.21626 1.04758 0.86314 1.02901 0.82952 1.22181 0.82385 0.86329 0.73613 1.90750 1.21512 1.86278 1.41483 1.84497 1.52402 1.19158 1.76021 1.77409 1.23526 0.95584 1.15935 0.92144 0.93970 0.93277 0.81300 0.82076 0.74940 0.86102 0.86637 0.72745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.96 27.47 -169.99 -4.67 15.30 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.54 -15.03 9.79 -34.44 -0.34 -15.37 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 C 0.23 5.42 5.33 -5.19 -0.03 5.40 16 10 N -0.32 -7.08 3.67 -62.56 -0.23 -7.31 16 11 C 0.05 0.97 11.43 -17.24 -0.20 0.78 16 12 C -0.28 -5.34 9.61 -39.83 -0.38 -5.72 16 13 C 0.26 5.00 8.11 -154.38 -1.25 3.75 16 14 N -0.62 -9.19 5.45 -11.13 -0.06 -9.25 16 15 C 0.55 7.32 7.58 -10.99 -0.08 7.24 16 16 O -0.52 -8.21 13.39 5.55 0.07 -8.14 16 17 C -0.15 -1.43 5.70 -91.77 -0.52 -1.95 16 18 H 0.14 1.25 7.67 -51.93 -0.40 0.85 16 19 C -0.11 -0.77 9.94 -26.73 -0.27 -1.04 16 20 C -0.14 -1.17 5.81 -91.77 -0.53 -1.71 16 21 H 0.15 1.34 7.67 -51.93 -0.40 0.94 16 22 C 0.51 4.61 8.11 36.01 0.29 4.90 16 23 O -0.51 -6.03 17.02 -18.75 -0.32 -6.35 16 24 O -0.51 -3.34 13.42 -39.24 -0.53 -3.87 16 25 N -0.29 -6.62 12.42 31.44 0.39 -6.23 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 28 H 0.05 1.04 7.49 -51.93 -0.39 0.65 16 29 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.16 2.90 5.92 -52.49 -0.31 2.59 16 31 H 0.41 5.01 8.82 -40.82 -0.36 4.65 16 32 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 0.91 9.10 45.56 0.41 1.33 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -35.99 309.01 -5.99 -41.98 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.67 Total: 6.65 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.41 Total: -1.70 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.87 Total: -48.54 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.77 Total: -18.35 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.99 -5.99 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.685 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds