Wall clock time and date at job start Tue Mar 31 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47158 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47350 * 30.00043 * 3 2 1 6 6 H 1.48505 * 109.47116 * 150.00125 * 3 2 1 7 7 C 1.37881 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97705 * 124.98359 * 10 9 7 12 12 C 1.35238 * 107.86346 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86643 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97643 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99807 * 0.02562 * 14 13 12 16 16 O 1.21294 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00035 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.55273 * 34.27587 * 17 15 14 19 19 C 1.53000 * 117.49789 * 248.60217 * 17 15 14 20 20 C 1.52998 * 60.00232 * 252.51228 * 19 17 15 21 21 H 1.08995 * 117.49718 * 107.49017 * 20 19 17 22 22 C 1.50705 * 117.49719 * 252.51053 * 20 19 17 23 23 O 1.20825 * 119.99614 * 68.62090 * 22 20 19 24 24 O 1.34224 * 119.99795 * 248.62375 * 22 20 19 25 25 N 1.31224 * 108.05286 * 359.97438 * 13 12 11 26 26 H 0.96995 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47270 * 60.00059 * 9 7 2 28 28 H 1.08995 * 109.47054 * 299.99939 * 9 7 2 29 29 H 1.07999 * 126.06888 * 0.05322 * 11 10 9 30 30 H 1.07998 * 126.07029 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00507 * 179.97438 * 14 13 12 32 32 H 1.09000 * 117.49814 * 0.02562 * 19 17 15 33 33 H 1.09003 * 117.49568 * 144.99515 * 19 17 15 34 34 H 0.96698 * 116.99701 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0013 11 6 4.8549 -3.1131 -0.8964 12 6 5.0555 -4.4058 -0.5537 13 6 4.2942 -4.6697 0.5963 14 7 4.2225 -5.8950 1.2729 15 6 4.9269 -6.9537 0.8264 16 8 5.6227 -6.8461 -0.1613 17 6 4.8493 -8.2713 1.5535 18 1 3.8828 -8.5059 1.9996 19 6 6.1023 -8.7450 2.2929 20 6 5.6721 -9.4349 0.9968 21 1 6.2696 -9.2474 0.1047 22 6 5.0843 -10.8182 1.1069 23 8 4.0018 -10.9754 1.6200 24 8 5.7633 -11.8755 0.6349 25 7 3.6617 -3.5685 0.9268 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6797 -0.8894 29 1 5.3003 -2.6017 -1.7370 30 1 5.6888 -5.1103 -1.0723 31 1 3.6664 -5.9809 2.0631 32 1 6.9825 -8.1034 2.2537 33 1 5.9600 -9.2912 3.2254 34 1 5.3455 -12.7426 0.7278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:56 Heat of formation + Delta-G solvation = -37.390503 kcal Electronic energy + Delta-G solvation = -20347.579425 eV Core-core repulsion = 16861.654793 eV Total energy + Delta-G solvation = -3485.924632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31973 -41.62684 -40.59659 -37.70692 -36.83522 -36.18551 -35.20504 -33.12551 -31.01317 -29.22429 -27.24348 -25.58619 -24.25288 -22.79177 -21.97355 -21.33699 -20.78550 -19.41186 -19.11098 -18.44438 -18.24251 -17.33551 -17.04331 -16.69626 -16.55238 -16.10973 -15.72600 -15.32924 -14.84633 -14.83225 -14.39079 -13.90520 -13.84736 -13.70118 -13.30607 -12.99651 -12.63295 -12.52782 -12.33765 -11.96439 -11.87862 -11.83350 -11.67700 -11.61163 -11.46734 -10.95280 -10.87178 -9.79114 -9.13357 -8.37842 -6.48452 0.79419 0.97650 1.23433 1.35862 1.38995 1.41605 1.50117 1.91321 2.13357 2.29076 2.39127 2.66421 2.94859 3.34033 3.48877 3.68809 3.94136 4.08807 4.20746 4.31369 4.60018 4.61545 4.76749 4.79763 4.86450 4.89206 4.93079 5.13308 5.24369 5.55408 5.85878 5.99690 6.17843 6.40197 6.57675 6.92567 6.95780 7.04909 7.14706 8.79414 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043678 B = 0.002928 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.902325 B = 9561.053266 C = 9876.281715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.238 1.238 7 C -0.548 4.548 8 H 0.025 0.975 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.061 3.939 12 C -0.293 4.293 13 C 0.263 3.737 14 N -0.620 5.620 15 C 0.554 3.446 16 O -0.541 6.541 17 C -0.161 4.161 18 H 0.151 0.849 19 C -0.085 4.085 20 C -0.141 4.141 21 H 0.151 0.849 22 C 0.520 3.480 23 O -0.545 6.545 24 O -0.504 6.504 25 N -0.347 5.347 26 H 0.272 0.728 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.212 0.788 30 H 0.171 0.829 31 H 0.425 0.575 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.616 -17.945 3.154 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.161 1.161 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.087 4.087 12 C -0.324 4.324 13 C 0.008 3.992 14 N -0.269 5.269 15 C 0.342 3.658 16 O -0.417 6.417 17 C -0.182 4.182 18 H 0.169 0.831 19 C -0.122 4.122 20 C -0.160 4.160 21 H 0.168 0.832 22 C 0.364 3.636 23 O -0.436 6.436 24 O -0.318 6.318 25 N -0.178 5.178 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.228 0.772 30 H 0.188 0.812 31 H 0.263 0.737 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 16.009 -16.801 3.371 23.450 hybrid contribution -0.786 -0.274 -0.228 0.863 sum 15.222 -17.075 3.143 23.090 Atomic orbital electron populations 1.70054 1.08643 1.28843 1.50668 1.25950 0.95774 1.03636 0.93185 0.85597 0.79513 0.77059 0.80085 1.17710 1.20687 1.16094 1.21240 0.90579 0.93708 1.53087 0.95651 1.19896 0.94086 0.74348 0.99724 1.48530 1.33980 1.10114 1.19974 1.23283 0.94206 0.94717 0.96503 1.21771 1.11808 0.97190 1.01650 1.19504 0.97692 0.87198 0.94799 1.42482 1.47613 1.06183 1.30615 1.19993 0.77933 0.84151 0.83765 1.90629 1.40554 1.83954 1.26534 1.22103 1.01728 0.89514 1.04888 0.83100 1.23349 0.95696 0.99143 0.94044 1.21665 1.04440 0.85939 1.03996 0.83174 1.22162 0.81767 0.86830 0.72855 1.90747 1.22851 1.86788 1.43169 1.84457 1.52161 1.19932 1.75211 1.77323 1.25818 0.96907 1.17745 0.91870 0.93555 0.89951 0.77151 0.81157 0.73701 0.85112 0.84349 0.70505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.96 40.47 27.47 68.60 1.88 42.35 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 7 C -0.55 -31.65 9.79 25.60 0.25 -31.40 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.24 10.98 5.33 85.63 0.46 11.43 16 10 N -0.34 -15.27 3.67 -351.85 -1.29 -16.56 16 11 C 0.06 2.20 11.43 83.52 0.96 3.15 16 12 C -0.29 -10.81 9.61 22.11 0.21 -10.60 16 13 C 0.26 10.24 8.11 133.32 1.08 11.32 16 14 N -0.62 -18.29 5.45 -307.51 -1.68 -19.97 16 15 C 0.55 14.31 7.58 87.66 0.66 14.98 16 16 O -0.54 -16.82 13.39 -3.07 -0.04 -16.86 16 17 C -0.16 -2.80 5.70 -11.54 -0.07 -2.87 16 18 H 0.15 2.45 7.67 -2.39 -0.02 2.44 16 19 C -0.09 -0.93 9.94 30.59 0.30 -0.63 16 20 C -0.14 -2.17 5.81 -11.54 -0.07 -2.24 16 21 H 0.15 2.42 7.67 -2.39 -0.02 2.41 16 22 C 0.52 8.48 8.11 71.24 0.58 9.05 16 23 O -0.54 -12.19 17.02 21.97 0.37 -11.82 16 24 O -0.50 -5.56 13.42 -51.36 -0.69 -6.25 16 25 N -0.35 -16.01 12.42 -54.45 -0.68 -16.69 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.05 2.08 7.20 -2.38 -0.02 2.06 16 28 H 0.08 3.23 7.49 -2.39 -0.02 3.21 16 29 H 0.21 5.49 8.06 -2.91 -0.02 5.47 16 30 H 0.17 5.95 5.92 -2.91 -0.02 5.93 16 31 H 0.43 10.37 8.82 -92.71 -0.82 9.56 16 32 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.43 1.01 9.10 -74.06 -0.67 0.33 16 Total: -1.00 -81.83 309.01 2.64 -79.19 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.37 Total: 21.17 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.83 Total: 3.42 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -3.34 Total: -111.22 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.36 Total: -34.93 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.35 kcal Total: -81.83 2.64 -79.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.799 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds