Wall clock time and date at job start Tue Mar 31 2020 01:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46853 * 300.00197 * 3 2 1 6 6 H 1.48498 * 109.46809 * 59.99736 * 3 2 1 7 7 C 1.39897 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00668 * 175.54745 * 7 2 1 9 9 C 1.41165 * 119.99840 * 355.54373 * 7 2 1 10 10 C 1.40872 * 120.15934 * 35.04043 * 9 7 2 11 11 C 1.36372 * 119.82147 * 180.22936 * 10 9 7 12 12 C 1.39485 * 120.17322 * 359.50112 * 11 10 9 13 13 N 1.39242 * 119.83416 * 180.25270 * 12 11 10 14 14 C 1.34778 * 119.99835 * 324.70947 * 13 12 11 15 15 O 1.21581 * 120.00266 * 4.28415 * 14 13 12 16 16 N 1.34782 * 119.99219 * 184.29089 * 14 13 12 17 17 O 1.41609 * 119.99392 * 179.97438 * 16 14 13 18 18 C 1.42901 * 113.99777 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.46863 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99814 * 179.97438 * 19 18 17 21 21 O 1.21277 * 120.00559 * 359.97438 * 19 18 17 22 22 C 1.39481 * 120.33073 * 0.23205 * 12 11 10 23 23 C 1.36375 * 120.16491 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00755 * 0.02562 * 1 2 3 25 25 H 1.07991 * 120.08801 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.91508 * 179.77236 * 11 10 9 27 27 H 0.96995 * 119.99742 * 144.70553 * 13 12 11 28 28 H 0.96996 * 120.00480 * 359.97438 * 16 14 13 29 29 H 1.09004 * 109.46846 * 300.00290 * 18 17 16 30 30 H 1.08997 * 109.47400 * 59.99861 * 18 17 16 31 31 H 0.97002 * 119.99700 * 0.02562 * 20 19 18 32 32 H 0.96998 * 120.00019 * 179.97438 * 20 19 18 33 33 H 1.07993 * 119.91229 * 180.02562 * 22 12 11 34 34 H 1.08002 * 120.07934 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0721 9 6 1.3057 -2.4322 0.0961 10 6 0.0440 -2.5723 -0.5147 11 6 -0.6308 -3.7530 -0.4141 12 6 -0.0703 -4.8237 0.2824 13 7 -0.7631 -6.0279 0.3763 14 6 -2.1072 -6.0259 0.4771 15 8 -2.7205 -4.9784 0.4078 16 7 -2.7712 -7.1852 0.6548 17 8 -4.1833 -7.1831 0.7613 18 6 -4.7540 -8.4799 0.9477 19 6 -6.2528 -8.3595 1.0470 20 7 -7.0071 -9.4621 1.2252 21 8 -6.7804 -7.2704 0.9666 22 6 1.1810 -4.6943 0.8851 23 6 1.8654 -3.5180 0.7975 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3894 -1.7455 -1.0576 26 1 -1.5998 -3.8609 -0.8787 27 1 -0.2785 -6.8680 0.3690 28 1 -2.2819 -8.0209 0.7098 29 1 -4.4961 -9.1155 0.1005 30 1 -4.3629 -8.9206 1.8647 31 1 -6.5851 -10.3331 1.2899 32 1 -7.9718 -9.3845 1.2895 33 1 1.6087 -5.5277 1.4223 34 1 2.8343 -3.4194 1.2642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775515354.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:03 Heat of formation + Delta-G solvation = -56.199240 kcal Electronic energy + Delta-G solvation = -20395.882864 eV Core-core repulsion = 16909.142624 eV Total energy + Delta-G solvation = -3486.740240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37478 -40.67363 -39.26481 -38.08682 -36.13229 -34.86807 -34.82019 -33.22851 -31.35857 -30.57103 -28.72253 -26.64101 -23.48847 -22.97088 -22.27392 -21.63155 -19.74833 -19.44940 -19.15899 -18.34420 -17.90019 -17.34442 -17.13355 -16.95628 -16.28958 -15.93458 -15.69072 -15.13655 -15.07148 -14.71572 -14.49357 -13.96440 -13.90254 -13.63081 -13.29385 -12.87203 -12.63080 -12.32064 -12.27794 -11.80420 -11.66338 -11.41858 -11.23682 -10.93278 -10.79847 -10.56539 -10.06519 -9.40317 -8.69797 -8.45768 -6.29041 0.32038 0.91988 1.18609 1.40725 1.43613 1.49160 1.57236 2.13164 2.26309 2.37790 2.85533 3.03627 3.55105 3.73712 3.94754 4.08074 4.12947 4.49687 4.53439 4.98189 5.13321 5.18242 5.35870 5.43197 5.48880 5.74050 5.78504 5.83891 6.11165 6.14312 6.18797 6.35058 6.40987 6.75782 6.99895 7.06626 7.10237 7.23367 7.63440 8.47297 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036948 B = 0.003039 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.640495 B = 9210.578265 C = 9857.780023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.494 4.494 8 H 0.082 0.918 9 C 0.064 3.936 10 C -0.169 4.169 11 C -0.111 4.111 12 C 0.040 3.960 13 N -0.638 5.638 14 C 0.706 3.294 15 O -0.616 6.616 16 N -0.590 5.590 17 O -0.147 6.147 18 C 0.003 3.997 19 C 0.520 3.480 20 N -0.819 5.819 21 O -0.589 6.589 22 C -0.101 4.101 23 C -0.207 4.207 24 H 0.281 0.719 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.423 0.577 28 H 0.430 0.570 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.425 0.575 32 H 0.415 0.585 33 H 0.145 0.855 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -24.272 2.868 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.192 4.192 3 Si 0.813 3.187 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.062 3.938 10 C -0.190 4.190 11 C -0.131 4.131 12 C -0.054 4.054 13 N -0.291 5.291 14 C 0.407 3.593 15 O -0.494 6.494 16 N -0.298 5.298 17 O -0.151 6.151 18 C -0.077 4.077 19 C 0.303 3.697 20 N -0.387 5.387 21 O -0.468 6.468 22 C -0.121 4.121 23 C -0.227 4.227 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.261 0.739 28 H 0.274 0.726 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.258 0.742 32 H 0.247 0.753 33 H 0.162 0.838 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.687 -22.332 2.742 23.207 hybrid contribution -0.153 -0.257 0.019 0.300 sum -5.841 -22.589 2.761 23.495 Atomic orbital electron populations 1.69938 1.09033 1.29670 1.39135 1.26886 0.95648 1.04889 0.91774 0.85014 0.79346 0.75946 0.78426 1.17430 1.19463 1.19649 1.19799 0.95036 0.91051 1.46612 0.89985 1.18088 0.92518 0.93451 0.89739 1.21153 0.98119 0.96161 1.03519 1.20696 0.98543 0.94325 0.99567 1.17054 0.94671 0.86676 1.06961 1.41448 1.02601 1.08620 1.76456 1.15672 0.82280 0.82776 0.78559 1.90975 1.67881 1.32402 1.58119 1.45627 0.94523 1.08639 1.81026 1.90782 1.00784 1.27128 1.96381 1.23067 0.90727 0.86607 1.07252 1.20297 0.89345 0.84552 0.75482 1.43393 1.11349 1.09035 1.74889 1.90864 1.75307 1.29556 1.51122 1.20420 0.93947 0.98217 0.99519 1.20974 1.01998 0.94504 1.05213 0.90901 0.88081 0.89018 0.73877 0.72570 0.84761 0.84798 0.74205 0.75260 0.83760 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.09 10.61 21.82 0.23 -48.86 16 2 C 0.02 1.02 5.42 85.24 0.46 1.48 16 3 Si 0.99 40.83 29.56 68.60 2.03 42.86 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.49 -27.44 9.02 23.39 0.21 -27.23 16 8 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 9 C 0.06 3.60 5.55 -21.27 -0.12 3.48 16 10 C -0.17 -9.83 8.61 22.48 0.19 -9.64 16 11 C -0.11 -5.92 8.61 22.13 0.19 -5.73 16 12 C 0.04 1.74 6.31 38.57 0.24 1.99 16 13 N -0.64 -20.68 5.31 -316.77 -1.68 -22.37 16 14 C 0.71 26.40 8.54 179.05 1.53 27.93 16 15 O -0.62 -32.16 14.17 13.38 0.19 -31.97 16 16 N -0.59 -14.72 6.40 -184.74 -1.18 -15.90 16 17 O -0.15 -4.32 10.64 -11.20 -0.12 -4.44 16 18 C 0.00 0.04 6.71 71.23 0.48 0.52 16 19 C 0.52 9.69 8.18 87.66 0.72 10.41 16 20 N -0.82 -5.23 8.87 -173.54 -1.54 -6.77 16 21 O -0.59 -20.02 17.34 16.02 0.28 -19.74 16 22 C -0.10 -4.06 9.90 22.13 0.22 -3.84 16 23 C -0.21 -9.76 9.74 22.48 0.22 -9.54 16 24 H 0.28 14.92 8.30 -92.71 -0.77 14.15 16 25 H 0.10 6.34 6.15 -2.92 -0.02 6.33 16 26 H 0.09 5.17 6.22 -2.91 -0.02 5.15 16 27 H 0.42 8.52 8.83 -92.71 -0.82 7.70 16 28 H 0.43 5.07 8.56 -92.71 -0.79 4.27 16 29 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.43 -1.15 8.83 -92.71 -0.82 -1.97 16 32 H 0.41 2.42 8.93 -92.71 -0.83 1.59 16 33 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -95.14 306.86 0.50 -94.64 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -2.05 Total: 22.74 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.34 Total: -10.18 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -4.17 Total: -93.90 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: 0.35 Total: -56.16 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -95.14 0.50 -94.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775515354.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.442 kcal (2) G-P(sol) polarization free energy of solvation -95.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds