Wall clock time and date at job start Tue Mar 31 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38548 * 120.01213 * 2 1 4 4 C 1.40118 * 117.81124 * 180.26343 * 3 2 1 5 5 C 1.48032 * 121.14916 * 179.78548 * 4 3 2 6 6 O 1.21428 * 120.00108 * 173.87904 * 5 4 3 7 7 O 1.34678 * 120.00166 * 353.88291 * 5 4 3 8 8 C 1.45200 * 116.99999 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.46918 * 179.97438 * 8 7 5 10 10 O 1.21297 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99837 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99994 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00033 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99935 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00085 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99877 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47147 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47300 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46966 * 300.00140 * 16 14 12 20 20 C 1.39807 * 117.69911 * 359.51053 * 4 3 2 21 21 C 1.50693 * 120.17585 * 180.27356 * 20 4 3 22 22 N 1.31890 * 119.64560 * 0.25326 * 20 4 3 23 23 N 1.28277 * 122.33806 * 0.02562 * 22 20 4 24 24 H 1.09002 * 109.46852 * 270.23245 * 1 2 3 25 25 H 1.08990 * 109.47590 * 30.23824 * 1 2 3 26 26 H 1.09007 * 109.46965 * 150.23950 * 1 2 3 27 27 H 1.08001 * 121.09132 * 0.04489 * 3 2 1 28 28 H 1.09002 * 109.47139 * 299.99743 * 8 7 5 29 29 H 1.09001 * 109.47202 * 59.99677 * 8 7 5 30 30 H 0.96994 * 120.00270 * 0.02562 * 11 9 8 31 31 H 0.97001 * 119.99729 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.47180 * 83.73104 * 21 20 4 33 33 H 1.09002 * 109.47110 * 203.73254 * 21 20 4 34 34 H 1.09003 * 109.47357 * 323.73108 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.6001 1.1459 -0.0057 5 6 4.4139 2.3825 -0.0108 6 8 5.6216 2.3150 0.0964 7 8 3.8149 3.5823 -0.1344 8 6 4.6753 4.7520 -0.1321 9 6 3.8347 5.9941 -0.2794 10 8 2.6291 5.9026 -0.3762 11 7 4.4225 7.2067 -0.3024 12 6 3.6578 8.3367 -0.4358 13 1 2.5843 8.2553 -0.5221 14 6 4.2639 9.5869 -0.4602 15 7 5.5701 9.6860 -0.3557 16 14 3.2219 11.1267 -0.6413 17 1 2.2658 11.2134 0.4917 18 1 4.1017 12.3229 -0.6385 19 1 2.4696 11.0677 -1.9203 20 6 4.2020 -0.1160 -0.0004 21 6 5.7039 -0.2388 0.0001 22 7 3.4483 -1.1982 0.0045 23 7 2.1667 -1.1419 0.0042 24 1 -0.3633 0.0042 1.0277 25 1 -0.3634 0.8877 -0.5175 26 1 -0.3633 -0.8922 -0.5101 27 1 1.6781 2.1453 0.0007 28 1 5.2269 4.7954 0.8070 29 1 5.3774 4.6882 -0.9633 30 1 5.3866 7.2799 -0.2246 31 1 5.9931 10.5587 -0.3723 32 1 6.0752 -0.1523 1.0213 33 1 5.9894 -1.2078 -0.4095 34 1 6.1336 0.5548 -0.6112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786012810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:00 Heat of formation + Delta-G solvation = -85.596182 kcal Electronic energy + Delta-G solvation = -20669.257638 eV Core-core repulsion = 17181.242651 eV Total energy + Delta-G solvation = -3488.014987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.64063 -41.43981 -40.03496 -37.81397 -36.04626 -35.56144 -34.88189 -33.42174 -31.21080 -29.98766 -27.93944 -26.95061 -26.09282 -24.11370 -22.41621 -21.46962 -20.09756 -19.30698 -18.90752 -17.95147 -17.70910 -17.46402 -16.84029 -16.60607 -16.54554 -15.84826 -15.69816 -15.24285 -14.65787 -14.45833 -14.40907 -13.98256 -13.74101 -13.61709 -13.53911 -13.34822 -13.10923 -12.93418 -12.48706 -12.22897 -12.13212 -11.98097 -11.86308 -11.57362 -11.52218 -10.88967 -10.62599 -10.52148 -10.12238 -8.52679 -6.03234 -1.04971 -0.35431 1.04563 1.12279 1.37720 1.44271 1.54931 1.86606 2.27021 2.27964 2.74887 2.84826 3.06883 3.13307 3.19432 3.44795 3.63450 3.94752 4.00498 4.13558 4.16614 4.20952 4.42090 4.63568 4.70911 4.74218 4.78632 4.92132 5.04337 5.22638 5.30404 5.36966 5.87994 6.30894 6.48468 7.02435 7.39348 7.41799 7.92183 8.63893 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030312 B = 0.003400 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.500425 B = 8232.333004 C = 9126.058833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 C -0.045 4.045 4 C -0.132 4.132 5 C 0.515 3.485 6 O -0.495 6.495 7 O -0.332 6.332 8 C 0.073 3.927 9 C 0.436 3.564 10 O -0.616 6.616 11 N -0.556 5.556 12 C -0.339 4.339 13 H 0.086 0.914 14 C -0.007 4.007 15 N -0.915 5.915 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.118 3.882 21 C -0.104 4.104 22 N -0.262 5.262 23 N -0.238 5.238 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.180 0.820 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.400 0.600 31 H 0.281 0.719 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -15.566 1.039 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.074 4.074 4 C -0.144 4.144 5 C 0.359 3.641 6 O -0.384 6.384 7 O -0.247 6.247 8 C -0.004 4.004 9 C 0.223 3.777 10 O -0.503 6.503 11 N -0.194 5.194 12 C -0.468 4.468 13 H 0.104 0.896 14 C -0.208 4.208 15 N -0.555 5.555 16 Si 0.819 3.181 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.027 4.027 21 C -0.162 4.162 22 N -0.103 5.103 23 N -0.081 5.081 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.198 0.802 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.091 -17.097 1.011 17.403 hybrid contribution 0.456 2.498 -0.014 2.540 sum -2.635 -14.598 0.997 14.868 Atomic orbital electron populations 1.20880 0.83903 1.05675 1.05320 1.23454 1.01206 0.88654 0.95295 1.23102 0.92744 1.02113 0.89437 1.20202 0.94848 0.91944 1.07399 1.20888 0.86302 0.83632 0.73326 1.90801 1.14944 1.87323 1.45311 1.86545 1.41114 1.14292 1.82734 1.22646 0.91266 0.80584 1.05933 1.20048 0.88544 0.84798 0.84345 1.90528 1.16164 1.86942 1.56696 1.41720 1.10188 1.04155 1.63299 1.19691 0.92733 0.84318 1.50033 0.89614 1.26100 0.97240 1.01761 0.95717 1.69660 1.09691 1.27228 1.48874 0.84940 0.77718 0.76299 0.79137 1.19458 1.19561 1.19470 1.23366 1.00650 0.87755 0.90884 1.21029 0.84963 1.05102 1.05111 1.73075 0.99426 1.26146 1.11670 1.72708 1.01804 1.26251 1.07305 0.87974 0.88112 0.88923 0.80220 0.86883 0.86906 0.76504 0.90962 0.88464 0.88763 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.19 71.24 0.73 -0.53 16 2 C 0.06 1.22 6.86 42.63 0.29 1.51 16 3 C -0.04 -1.00 9.46 22.80 0.22 -0.78 16 4 C -0.13 -3.38 5.92 -19.84 -0.12 -3.50 16 5 C 0.52 14.83 7.86 70.42 0.55 15.39 16 6 O -0.49 -14.59 13.31 20.07 0.27 -14.32 16 7 O -0.33 -11.04 9.18 -49.49 -0.45 -11.50 16 8 C 0.07 2.46 5.95 71.24 0.42 2.89 16 9 C 0.44 19.90 7.86 87.66 0.69 20.59 16 10 O -0.62 -32.87 16.08 15.71 0.25 -32.62 16 11 N -0.56 -27.10 5.29 -306.98 -1.62 -28.72 16 12 C -0.34 -18.29 9.68 84.04 0.81 -17.48 16 13 H 0.09 4.89 7.16 -2.91 -0.02 4.87 16 14 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 15 N -0.91 -47.17 13.05 21.66 0.28 -46.89 16 16 Si 1.00 40.71 29.55 68.60 2.03 42.73 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 20 C 0.12 2.93 6.91 42.93 0.30 3.22 16 21 C -0.10 -2.12 8.98 71.23 0.64 -1.48 16 22 N -0.26 -6.98 11.42 -46.92 -0.54 -7.51 16 23 N -0.24 -6.03 11.40 -47.69 -0.54 -6.58 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 0.99 8.09 -2.39 -0.02 0.98 16 26 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.18 3.69 7.78 -2.91 -0.02 3.67 16 28 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.40 18.34 7.90 -92.71 -0.73 17.60 16 31 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 2.11 5.93 -2.39 -0.01 2.09 16 Total: -1.00 -66.56 309.78 5.10 -61.46 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.42 Total: 24.02 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 5.00 Total: 19.93 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -2.42 Total: -89.70 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: 0.07 Total: -58.44 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -66.56 5.10 -61.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786012810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.135 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds