Wall clock time and date at job start Tue Mar 31 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48499 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47346 * 300.00157 * 3 2 1 6 6 H 1.48505 * 109.46931 * 59.99665 * 3 2 1 7 7 C 1.37870 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99899 * 180.02562 * 10 9 7 12 12 O 1.21593 * 120.00257 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00548 * 180.02562 * 11 10 9 14 14 N 1.40109 * 119.99481 * 0.02562 * 13 11 10 15 15 C 1.34777 * 119.99659 * 180.27982 * 14 13 11 16 16 O 1.21583 * 120.00270 * 359.71851 * 15 14 13 17 17 C 1.47532 * 119.99530 * 179.72162 * 15 14 13 18 18 C 1.39709 * 120.19724 * 0.02562 * 17 15 14 19 19 C 1.37780 * 119.91240 * 179.97438 * 18 17 15 20 20 C 1.38554 * 120.30081 * 0.02562 * 19 18 17 21 21 C 1.38051 * 120.38728 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.08727 * 359.70201 * 21 20 19 23 23 O 1.35652 * 120.15479 * 180.29429 * 22 21 20 24 24 H 0.97010 * 120.00007 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46559 * 60.00475 * 9 7 2 26 26 H 1.08994 * 109.47351 * 300.00564 * 9 7 2 27 27 H 0.96996 * 119.99958 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00718 * 180.02562 * 13 11 10 29 29 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 30 30 H 1.08004 * 120.03966 * 359.95062 * 18 17 15 31 31 H 1.07998 * 119.85278 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.80462 * 179.97438 * 20 19 18 33 33 H 1.08009 * 119.95834 * 179.97438 * 21 20 19 34 34 H 0.96700 * 114.00476 * 270.28169 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6295 -5.9077 -0.0005 14 7 4.0070 -5.6517 0.0011 15 6 4.8828 -6.6761 -0.0041 16 8 4.4776 -7.8224 -0.0050 17 6 6.3333 -6.4064 -0.0086 18 6 6.8034 -5.0908 -0.0069 19 6 8.1593 -4.8457 -0.0106 20 6 9.0600 -5.8985 -0.0165 21 6 8.6090 -7.2033 -0.0182 22 6 7.2476 -7.4686 -0.0077 23 8 6.8030 -8.7502 -0.0033 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 3.1567 -3.4353 -0.0002 28 1 2.3063 -6.8223 -0.0013 29 1 4.3303 -4.7371 0.0015 30 1 6.1050 -4.2671 -0.0032 31 1 8.5216 -3.8284 -0.0098 32 1 10.1210 -5.6972 -0.0198 33 1 9.3173 -8.0188 -0.0232 34 1 6.6716 -9.1240 -0.8854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:25 Heat of formation + Delta-G solvation = -40.262625 kcal Electronic energy + Delta-G solvation = -20757.816537 eV Core-core repulsion = 17271.767360 eV Total energy + Delta-G solvation = -3486.049177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80782 -39.60583 -38.40589 -36.99188 -35.40241 -34.34760 -32.44589 -32.21121 -30.26671 -29.83972 -27.18208 -24.32995 -23.08625 -22.80680 -21.21545 -20.48723 -19.32541 -18.44060 -17.91436 -16.88721 -16.10323 -15.93307 -15.76360 -15.40524 -15.11248 -14.87764 -14.66278 -14.41123 -14.26082 -13.79639 -13.22129 -12.73794 -12.55816 -12.17927 -12.08772 -12.05417 -11.16768 -11.06741 -11.02108 -10.93733 -10.44356 -10.16490 -9.72532 -9.47475 -9.45785 -9.07288 -8.85641 -8.33853 -7.87359 -6.23333 -4.31060 0.42128 0.86321 1.95068 2.56983 3.18911 3.25367 3.28220 3.36327 3.65210 3.69017 3.87728 4.18112 4.28725 4.40284 4.59780 4.87513 4.95890 5.13253 5.25755 5.31166 5.43159 5.78380 5.86892 6.00577 6.30751 6.54153 6.68652 7.24096 7.34085 7.40972 7.45126 7.46270 7.60282 7.87236 8.06924 8.61095 8.77371 9.04267 9.35785 10.86828 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.004091 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.062670 B = 6843.140430 C = 8327.507637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.264 3.736 10 N -0.725 5.725 11 C 0.701 3.299 12 O -0.577 6.577 13 N -0.541 5.541 14 N -0.520 5.520 15 C 0.558 3.442 16 O -0.523 6.523 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.157 4.157 22 C 0.172 3.828 23 O -0.478 6.478 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.380 0.620 28 H 0.436 0.564 29 H 0.420 0.580 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.371 -10.538 -1.720 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.379 5.379 11 C 0.400 3.600 12 O -0.451 6.451 13 N -0.300 5.300 14 N -0.272 5.272 15 C 0.345 3.655 16 O -0.398 6.398 17 C -0.163 4.163 18 C -0.089 4.089 19 C -0.152 4.152 20 C -0.094 4.094 21 C -0.176 4.176 22 C 0.125 3.875 23 O -0.289 6.289 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.213 0.787 28 H 0.281 0.719 29 H 0.262 0.738 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 18.963 -11.109 -1.115 22.006 hybrid contribution 0.903 1.118 -0.457 1.508 sum 19.866 -9.992 -1.573 22.293 Atomic orbital electron populations 1.69983 1.06116 1.27338 1.48546 1.24939 0.94921 0.99451 0.94601 0.86343 0.79716 0.82891 0.77821 1.19654 1.20757 1.20758 1.21200 0.93220 0.90292 1.53659 0.91892 1.19106 0.87703 0.80829 0.98077 1.45797 1.10583 1.04547 1.76970 1.16000 0.84257 0.80891 0.78804 1.90991 1.12217 1.82595 1.59275 1.44803 0.91940 1.10266 1.82961 1.44759 0.96194 1.10025 1.76203 1.18038 0.85179 0.84496 0.77782 1.90826 1.79206 1.20187 1.49589 1.20148 0.92039 0.94429 1.09644 1.21335 0.96645 0.94892 0.96041 1.21160 0.92648 1.00010 1.01377 1.21281 1.00323 0.91959 0.95857 1.21471 0.94509 0.97931 1.03639 1.18448 0.90276 0.83921 0.94845 1.84755 1.87565 1.22966 1.33609 0.92374 0.95279 0.95292 0.78728 0.71928 0.73768 0.84949 0.84686 0.84968 0.84581 0.74529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.55 -14.13 9.28 -34.44 -0.32 -14.45 16 8 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 9 C 0.26 6.77 5.43 -5.20 -0.03 6.74 16 10 N -0.72 -14.80 5.51 -66.42 -0.37 -15.17 16 11 C 0.70 14.40 8.68 -86.92 -0.75 13.64 16 12 O -0.58 -14.23 17.18 5.28 0.09 -14.14 16 13 N -0.54 -8.94 6.26 27.63 0.17 -8.77 16 14 N -0.52 -6.98 6.21 30.46 0.19 -6.79 16 15 C 0.56 7.57 7.88 -12.47 -0.10 7.47 16 16 O -0.52 -8.53 15.00 -16.59 -0.25 -8.78 16 17 C -0.16 -1.71 5.89 -104.84 -0.62 -2.32 16 18 C -0.07 -0.60 9.53 -39.20 -0.37 -0.97 16 19 C -0.13 -0.93 10.02 -39.63 -0.40 -1.33 16 20 C -0.08 -0.48 10.03 -39.53 -0.40 -0.88 16 21 C -0.16 -1.19 9.98 -39.48 -0.39 -1.58 16 22 C 0.17 1.74 6.72 -38.69 -0.26 1.48 16 23 O -0.48 -5.11 11.58 -40.54 -0.47 -5.58 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.38 6.39 6.24 -40.82 -0.25 6.14 16 28 H 0.44 7.11 8.10 -182.59 -1.48 5.63 16 29 H 0.42 4.72 4.73 -182.59 -0.86 3.86 16 30 H 0.13 0.91 6.40 -52.48 -0.34 0.58 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.40 2.70 9.06 45.56 0.41 3.11 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -34.87 305.67 -8.21 -43.08 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.17 Total: 11.67 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -3.74 Total: 9.44 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.73 Total: -55.30 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.63 Total: -28.51 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.87 -8.21 -43.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.819 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds