Wall clock time and date at job start Tue Mar 31 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48499 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47346 * 300.00157 * 3 2 1 6 6 H 1.48505 * 109.46931 * 59.99665 * 3 2 1 7 7 C 1.37870 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99899 * 180.02562 * 10 9 7 12 12 O 1.21593 * 120.00257 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00548 * 180.02562 * 11 10 9 14 14 N 1.40109 * 119.99481 * 0.02562 * 13 11 10 15 15 C 1.34777 * 119.99659 * 180.27982 * 14 13 11 16 16 O 1.21583 * 120.00270 * 359.71851 * 15 14 13 17 17 C 1.47532 * 119.99530 * 179.72162 * 15 14 13 18 18 C 1.39709 * 120.19724 * 0.02562 * 17 15 14 19 19 C 1.37780 * 119.91240 * 179.97438 * 18 17 15 20 20 C 1.38554 * 120.30081 * 0.02562 * 19 18 17 21 21 C 1.38051 * 120.38728 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.08727 * 359.70201 * 21 20 19 23 23 O 1.35652 * 120.15479 * 180.29429 * 22 21 20 24 24 H 0.97010 * 120.00007 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46559 * 60.00475 * 9 7 2 26 26 H 1.08994 * 109.47351 * 300.00564 * 9 7 2 27 27 H 0.96996 * 119.99958 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00718 * 180.02562 * 13 11 10 29 29 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 30 30 H 1.08004 * 120.03966 * 359.95062 * 18 17 15 31 31 H 1.07998 * 119.85278 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.80462 * 179.97438 * 20 19 18 33 33 H 1.08009 * 119.95834 * 179.97438 * 21 20 19 34 34 H 0.96700 * 114.00476 * 270.28169 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6295 -5.9077 -0.0005 14 7 4.0070 -5.6517 0.0011 15 6 4.8828 -6.6761 -0.0041 16 8 4.4776 -7.8224 -0.0050 17 6 6.3333 -6.4064 -0.0086 18 6 6.8034 -5.0908 -0.0069 19 6 8.1593 -4.8457 -0.0106 20 6 9.0600 -5.8985 -0.0165 21 6 8.6090 -7.2033 -0.0182 22 6 7.2476 -7.4686 -0.0077 23 8 6.8030 -8.7502 -0.0033 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 3.1567 -3.4353 -0.0002 28 1 2.3063 -6.8223 -0.0013 29 1 4.3303 -4.7371 0.0015 30 1 6.1050 -4.2671 -0.0032 31 1 8.5216 -3.8284 -0.0098 32 1 10.1210 -5.6972 -0.0198 33 1 9.3173 -8.0188 -0.0232 34 1 6.6716 -9.1240 -0.8854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:25 Heat of formation + Delta-G solvation = -68.063926 kcal Electronic energy + Delta-G solvation = -20759.022092 eV Core-core repulsion = 17271.767360 eV Total energy + Delta-G solvation = -3487.254731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86309 -40.91944 -39.54362 -37.69989 -36.77546 -36.25214 -34.29622 -33.25967 -31.14328 -30.69084 -29.14470 -25.18815 -24.93829 -23.52248 -22.22650 -22.12498 -20.73028 -19.31447 -18.99176 -18.39802 -17.59363 -16.97448 -16.89385 -16.61144 -16.48854 -16.03961 -15.97622 -15.84006 -15.17852 -14.98634 -14.58791 -14.19042 -14.05184 -13.34096 -13.15629 -12.88508 -12.76846 -12.65109 -12.53807 -12.21504 -11.85710 -11.67684 -11.42923 -11.04617 -10.82932 -10.17585 -10.06484 -9.70585 -9.36538 -8.26598 -6.43304 -0.28553 0.28192 0.68791 1.47881 1.48884 1.61843 1.61927 2.01755 2.08365 2.43977 2.70958 3.09637 3.23841 3.25311 3.82710 3.91171 4.11618 4.35456 4.43045 4.69869 4.88407 4.97084 5.13899 5.25498 5.28999 5.36732 5.38615 5.44356 5.46274 5.78149 5.80009 5.90293 6.19073 6.62786 6.72881 6.80199 7.19872 7.27272 7.42279 8.85868 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.004091 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.062670 B = 6843.140430 C = 8327.507637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.247 1.247 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.090 0.910 9 C 0.280 3.720 10 N -0.713 5.713 11 C 0.704 3.296 12 O -0.623 6.623 13 N -0.529 5.529 14 N -0.513 5.513 15 C 0.560 3.440 16 O -0.556 6.556 17 C -0.182 4.182 18 C -0.074 4.074 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.158 4.158 22 C 0.154 3.846 23 O -0.499 6.499 24 H 0.268 0.732 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.401 0.599 28 H 0.439 0.561 29 H 0.430 0.570 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.416 -9.206 -1.779 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.170 1.170 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.591 4.591 8 H 0.108 0.892 9 C 0.158 3.842 10 N -0.369 5.369 11 C 0.403 3.597 12 O -0.501 6.501 13 N -0.285 5.285 14 N -0.267 5.267 15 C 0.349 3.651 16 O -0.433 6.433 17 C -0.187 4.187 18 C -0.092 4.092 19 C -0.151 4.151 20 C -0.081 4.081 21 C -0.176 4.176 22 C 0.108 3.892 23 O -0.312 6.312 24 H 0.077 0.923 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.237 0.763 28 H 0.284 0.716 29 H 0.275 0.725 30 H 0.163 0.837 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 23.096 -9.811 -1.182 25.121 hybrid contribution -0.248 0.602 -0.446 0.790 sum 22.848 -9.208 -1.629 24.688 Atomic orbital electron populations 1.70149 1.08366 1.28543 1.49890 1.26047 0.95722 1.03867 0.93843 0.85098 0.79384 0.77221 0.77419 1.16991 1.20773 1.20844 1.21612 0.94539 0.90026 1.52964 0.89169 1.18588 0.88052 0.82927 0.94674 1.45310 1.10943 1.03531 1.77097 1.15954 0.83988 0.81295 0.78439 1.90957 1.14615 1.83473 1.61074 1.44380 0.93527 1.09256 1.81379 1.44837 0.94199 1.10947 1.76685 1.18629 0.86260 0.83799 0.76363 1.90805 1.79928 1.21487 1.51091 1.20047 0.89865 0.95989 1.12814 1.21558 0.97987 0.94083 0.95602 1.21534 0.91857 1.01597 1.00107 1.21730 1.02039 0.91089 0.93268 1.21709 0.93505 0.99359 1.03073 1.18769 0.91364 0.83442 0.95647 1.84709 1.87873 1.23634 1.34949 0.92272 0.98920 0.99012 0.76307 0.71578 0.72471 0.83657 0.82011 0.81634 0.82749 0.73234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.29 21.44 0.28 -54.21 16 2 C 0.00 0.26 5.46 84.65 0.46 0.73 16 3 Si 0.99 40.06 29.54 68.60 2.03 42.08 16 4 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -28.35 9.28 25.60 0.24 -28.11 16 8 H 0.09 4.03 7.60 -2.90 -0.02 4.00 16 9 C 0.28 14.82 5.43 85.63 0.46 15.29 16 10 N -0.71 -29.24 5.51 -482.31 -2.66 -31.90 16 11 C 0.70 29.51 8.68 179.06 1.55 31.06 16 12 O -0.62 -32.07 17.18 -4.01 -0.07 -32.14 16 13 N -0.53 -17.62 6.26 -184.75 -1.16 -18.78 16 14 N -0.51 -13.39 6.21 -175.82 -1.09 -14.48 16 15 C 0.56 14.98 7.88 86.69 0.68 15.66 16 16 O -0.56 -18.37 15.00 16.94 0.25 -18.12 16 17 C -0.18 -3.71 5.89 -20.01 -0.12 -3.83 16 18 C -0.07 -1.05 9.53 22.52 0.21 -0.84 16 19 C -0.13 -1.31 10.02 22.24 0.22 -1.08 16 20 C -0.06 -0.54 10.03 22.30 0.22 -0.32 16 21 C -0.16 -1.95 9.98 22.34 0.22 -1.73 16 22 C 0.15 2.93 6.72 22.85 0.15 3.09 16 23 O -0.50 -10.58 11.58 -68.75 -0.80 -11.37 16 24 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.40 12.92 6.24 -92.71 -0.58 12.34 16 28 H 0.44 14.61 8.10 -213.31 -1.73 12.88 16 29 H 0.43 8.99 4.73 -213.31 -1.01 7.98 16 30 H 0.15 1.57 6.40 -2.91 -0.02 1.55 16 31 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 33 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.41 5.65 9.06 -74.06 -0.67 4.98 16 Total: -1.00 -78.05 305.67 -1.67 -79.72 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -2.79 Total: 29.27 kcal Atomic # 6 Polarization: 25.60 SS G_CDS: 4.32 Total: 29.92 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -4.62 Total: -119.37 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -0.61 Total: -61.63 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.08 kcal Total: -78.05 -1.67 -79.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.658 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds