Wall clock time and date at job start Tue Mar 31 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47114 * 2 1 4 4 C 1.36935 * 119.99923 * 275.84842 * 3 2 1 5 5 H 1.08000 * 120.00340 * 35.77325 * 4 3 2 6 6 C 1.38812 * 119.99899 * 215.77228 * 4 3 2 7 7 N 1.31622 * 120.00023 * 22.97120 * 6 4 3 8 8 Si 1.86798 * 120.00080 * 202.96615 * 6 4 3 9 9 H 1.48498 * 109.47062 * 60.00127 * 8 6 4 10 10 H 1.48504 * 109.47223 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47407 * 300.00148 * 8 6 4 12 12 C 1.46498 * 120.00191 * 95.84288 * 3 2 1 13 13 C 1.50702 * 109.47555 * 270.00414 * 12 3 2 14 14 C 1.33600 * 125.12447 * 89.71601 * 13 12 3 15 15 C 1.37980 * 115.06092 * 179.86025 * 14 13 12 16 16 C 1.34735 * 114.71032 * 0.43076 * 15 14 13 17 17 C 1.47927 * 125.26993 * 179.73485 * 16 15 14 18 18 N 1.34197 * 126.69567 * 359.70709 * 17 16 15 19 19 N 1.28982 * 107.25235 * 179.83434 * 18 17 16 20 20 N 1.28722 * 108.98757 * 0.43418 * 19 18 17 21 21 H 0.97003 * 125.31514 * 179.72869 * 20 19 18 22 22 N 1.28863 * 109.36665 * 359.72351 * 20 19 18 23 23 S 1.75860 * 125.12064 * 270.02337 * 13 12 3 24 24 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47547 * 299.99931 * 1 2 3 26 26 H 1.08997 * 109.47566 * 60.00012 * 1 2 3 27 27 H 1.09001 * 109.47093 * 239.99821 * 2 1 3 28 28 H 1.09001 * 109.47225 * 119.99631 * 2 1 3 29 29 H 0.97004 * 119.99648 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46765 * 30.00336 * 12 3 2 31 31 H 1.08998 * 109.47269 * 149.99982 * 12 3 2 32 32 H 1.08004 * 122.46985 * 0.02562 * 14 13 12 33 33 H 1.07991 * 122.64547 * 180.18131 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1326 2.0670 -1.1797 5 1 1.4094 1.9120 -1.9667 6 6 3.1780 2.9614 -1.3641 7 7 4.2798 2.8413 -0.6541 8 14 3.0213 4.3353 -2.6200 9 1 1.8674 5.2003 -2.2659 10 1 4.2654 5.1461 -2.6245 11 1 2.8067 3.7513 -3.9684 12 6 2.3843 2.0288 1.2621 13 6 1.1772 2.7219 1.8396 14 6 0.2956 2.1631 2.6736 15 6 -0.7323 2.9902 3.0776 16 6 -0.6917 4.2333 2.5596 17 6 -1.6761 5.3039 2.8298 18 7 -2.7589 5.2173 3.6177 19 7 -3.3473 6.3647 3.5867 20 7 -2.6874 7.1530 2.8121 21 1 -2.9234 8.0731 2.6155 22 7 -1.6642 6.5289 2.3386 23 16 0.7126 4.3860 1.5114 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0102 3.4665 -0.7828 30 1 2.7428 1.2772 1.9655 31 1 3.1711 2.7607 1.0801 32 1 0.3826 1.1401 3.0089 33 1 -1.5103 2.6655 3.7525 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825394400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:12 Heat of formation + Delta-G solvation = 157.781284 kcal Electronic energy + Delta-G solvation = -19042.973830 eV Core-core repulsion = 16040.558104 eV Total energy + Delta-G solvation = -3002.415726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.45700 -39.10149 -37.48641 -35.35519 -34.45839 -33.79834 -31.88808 -30.10882 -27.74810 -25.85010 -25.60678 -24.18596 -23.48906 -22.11078 -20.87153 -19.33459 -18.70069 -18.16870 -17.92317 -16.81679 -16.37207 -15.65197 -15.61013 -15.20724 -14.58503 -14.32536 -14.09581 -13.93356 -13.54455 -13.27427 -13.21188 -13.02498 -12.60191 -12.51927 -12.44889 -12.37710 -12.21232 -12.05735 -11.89114 -11.80255 -11.45095 -11.37339 -10.52080 -9.34727 -9.26990 -8.62041 -7.87511 -5.43096 -0.39493 0.13499 0.61536 1.16030 1.25218 1.40687 1.43766 1.48251 1.53464 2.04215 2.50163 2.71743 3.22109 3.31904 3.80758 4.16562 4.27022 4.38738 4.50280 4.62859 4.70592 4.83556 4.89605 4.95940 5.15065 5.22962 5.35217 5.38530 5.51773 5.59145 5.65111 5.71644 5.77570 6.44739 7.07965 7.14100 7.82839 8.34414 9.09300 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.006009 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.342031 B = 4658.666165 C = 5584.396980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 N -0.586 5.586 4 C -0.258 4.258 5 H 0.050 0.950 6 C -0.021 4.021 7 N -0.907 5.907 8 Si 0.929 3.071 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.276 1.276 12 C 0.199 3.801 13 C -0.136 4.136 14 C -0.161 4.161 15 C -0.058 4.058 16 C -0.178 4.178 17 C 0.252 3.748 18 N -0.286 5.286 19 N -0.050 5.050 20 N -0.200 5.200 21 H 0.494 0.506 22 N -0.312 5.312 23 S 0.129 5.871 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.255 0.745 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 4.188 8.007 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 N -0.306 5.306 4 C -0.389 4.389 5 H 0.068 0.932 6 C -0.219 4.219 7 N -0.550 5.550 8 Si 0.757 3.243 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.201 1.201 12 C 0.071 3.929 13 C -0.259 4.259 14 C -0.190 4.190 15 C -0.094 4.094 16 C -0.299 4.299 17 C -0.029 4.029 18 N -0.159 5.159 19 N -0.046 5.046 20 N -0.050 5.050 21 H 0.354 0.646 22 N -0.165 5.165 23 S 0.394 5.606 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.497 5.701 7.348 14.024 hybrid contribution -0.229 0.205 -0.409 0.512 sum -10.726 5.906 6.939 14.074 Atomic orbital electron populations 1.22208 0.97888 1.00753 1.00835 1.21012 0.93250 0.84992 0.99403 1.43965 1.75629 1.09465 1.01513 1.19044 1.05289 1.20329 0.94196 0.93190 1.25539 0.93966 1.02641 0.99763 1.70068 1.03774 1.36938 1.44201 0.85932 0.77091 0.80959 0.80357 1.20383 1.21462 1.20120 1.19552 0.90995 0.96283 0.86050 1.26324 1.04314 0.95638 0.99612 1.20073 0.95047 1.02146 1.01771 1.20418 0.99201 0.90598 0.99138 1.21218 1.01798 0.96004 1.10884 1.22538 0.94551 0.90447 0.95319 1.76113 1.06475 1.13490 1.19822 1.78761 1.19127 0.96161 1.10511 1.47668 1.13421 1.16507 1.27451 0.64649 1.75079 1.10459 1.07555 1.23381 1.84721 1.18635 1.12638 1.44635 0.91534 0.92748 0.95407 0.94718 0.92470 0.93611 0.91660 0.90521 0.82093 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 10.20 71.98 0.73 -4.59 16 2 C 0.14 5.36 6.44 86.38 0.56 5.92 16 3 N -0.59 -27.14 2.43 -706.35 -1.72 -28.86 16 4 C -0.26 -13.46 9.46 84.03 0.79 -12.66 16 5 H 0.05 2.68 7.93 -2.91 -0.02 2.66 16 6 C -0.02 -1.09 4.93 84.86 0.42 -0.67 16 7 N -0.91 -50.10 11.44 21.65 0.25 -49.85 16 8 Si 0.93 43.30 29.61 68.60 2.03 45.33 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.20 8.66 5.82 85.63 0.50 9.16 16 13 C -0.14 -5.21 6.06 24.63 0.15 -5.06 16 14 C -0.16 -5.10 8.41 21.16 0.18 -4.92 16 15 C -0.06 -1.75 10.07 21.40 0.22 -1.53 16 16 C -0.18 -6.05 6.44 24.04 0.15 -5.90 16 17 C 0.25 8.01 8.16 137.12 1.12 9.13 16 18 N -0.29 -8.51 12.51 -52.41 -0.66 -9.17 16 19 N -0.05 -1.23 13.46 37.02 0.50 -0.73 16 20 N -0.20 -4.00 7.90 37.02 0.29 -3.70 16 21 H 0.49 4.45 8.96 -347.51 -3.12 1.33 16 22 N -0.31 -8.87 12.41 -52.36 -0.65 -9.52 16 23 S 0.13 5.00 23.30 -56.49 -1.32 3.68 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.80 6.37 -2.39 -0.02 1.78 16 26 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 28 H 0.06 1.97 7.83 -2.39 -0.02 1.95 16 29 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.07 2.59 7.86 -2.38 -0.02 2.57 16 31 H 0.08 3.88 5.45 -2.39 -0.01 3.86 16 32 H 0.16 4.29 8.03 -2.91 -0.02 4.27 16 33 H 0.16 4.13 8.06 -2.92 -0.02 4.11 16 Total: -1.00 -62.58 303.55 1.59 -60.99 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -1.96 Total: 2.95 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.82 Total: -11.12 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -1.98 Total: -101.83 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.32 Total: 3.68 kcal Total: -62.58 1.59 -60.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825394400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.772 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds