Wall clock time and date at job start Tue Mar 31 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00525 * 3 2 1 5 5 H 1.48507 * 109.46621 * 29.99814 * 3 2 1 6 6 H 1.48492 * 109.47391 * 149.99708 * 3 2 1 7 7 C 1.40033 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00526 * 170.15610 * 7 2 1 9 9 C 1.41547 * 119.99731 * 350.15631 * 7 2 1 10 10 C 1.41168 * 120.99936 * 153.73573 * 9 7 2 11 11 C 1.37587 * 119.01833 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.10992 * 0.02761 * 11 10 9 13 13 C 1.32475 * 122.22857 * 359.64382 * 12 11 10 14 14 N 1.39474 * 119.57924 * 180.34519 * 13 12 11 15 15 C 1.34776 * 120.00016 * 5.66290 * 14 13 12 16 16 O 1.21281 * 120.00058 * 5.07397 * 15 14 13 17 17 C 1.50700 * 120.00292 * 185.07925 * 15 14 13 18 18 C 1.52992 * 109.47394 * 179.97438 * 17 15 14 19 19 N 1.46506 * 109.47103 * 179.97438 * 18 17 15 20 20 C 1.34776 * 120.00001 * 180.02562 * 19 18 17 21 21 O 1.21509 * 119.99818 * 359.97438 * 20 19 18 22 22 O 1.34631 * 119.99906 * 180.02562 * 20 19 18 23 23 C 1.38589 * 120.84103 * 0.64672 * 13 12 11 24 24 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.49205 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44581 * 179.97438 * 11 10 9 27 27 H 0.96999 * 119.99895 * 185.65486 * 14 13 12 28 28 H 1.09003 * 109.46637 * 299.99643 * 17 15 14 29 29 H 1.09003 * 109.47110 * 59.99152 * 17 15 14 30 30 H 1.09003 * 109.47054 * 299.99531 * 18 17 15 31 31 H 1.08999 * 109.47309 * 60.00024 * 18 17 15 32 32 H 0.96998 * 119.99836 * 359.97438 * 19 18 17 33 33 H 0.96701 * 116.99780 * 179.97438 * 22 20 19 34 34 H 1.08003 * 120.60418 * 179.67563 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2196 -0.1604 9 6 1.3155 -2.4296 0.2085 10 6 1.8136 -3.6467 -0.3047 11 6 1.1074 -4.8055 -0.0777 12 7 -0.0213 -4.7936 0.6080 13 6 -0.5277 -3.6797 1.1159 14 7 -1.7202 -3.7319 1.8373 15 6 -2.2901 -4.9220 2.1120 16 8 -1.7208 -5.9504 1.8131 17 6 -3.6347 -4.9750 2.7904 18 6 -4.0512 -6.4343 2.9839 19 7 -5.3581 -6.4857 3.6440 20 6 -5.9280 -7.6758 3.9188 21 8 -5.3580 -8.7060 3.6186 22 8 -7.1292 -7.7230 4.5249 23 6 0.1092 -2.4623 0.9342 24 1 -0.4850 0.8400 0.0004 25 1 2.7349 -3.6679 -0.8680 26 1 1.4819 -5.7405 -0.4676 27 1 -2.1393 -2.9118 2.1415 28 1 -3.5714 -4.4830 3.7611 29 1 -4.3739 -4.4653 2.1723 30 1 -4.1146 -6.9259 2.0131 31 1 -3.3122 -6.9442 3.6019 32 1 -5.8129 -5.6633 3.8840 33 1 -7.4979 -8.5994 4.7011 34 1 -0.3097 -1.5558 1.3456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831109075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:50 Heat of formation + Delta-G solvation = -89.436074 kcal Electronic energy + Delta-G solvation = -20421.626419 eV Core-core repulsion = 16933.444922 eV Total energy + Delta-G solvation = -3488.181497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43607 -39.67645 -37.95706 -36.52296 -35.32872 -34.37196 -33.78294 -31.18391 -30.51643 -28.55394 -26.04906 -24.71180 -22.08335 -21.89890 -21.36134 -19.85567 -18.96831 -17.71542 -17.57915 -16.74834 -16.41855 -15.92563 -15.41623 -15.25165 -14.84466 -14.23782 -13.94446 -13.79564 -13.73550 -13.48419 -12.77450 -12.64417 -12.44675 -12.03049 -11.87100 -11.51005 -11.41435 -11.21097 -10.94881 -10.87251 -10.34051 -10.19393 -9.81537 -9.49885 -9.45139 -9.41403 -8.03461 -7.79016 -7.09817 -6.79532 -4.67286 2.14881 2.47367 2.64712 2.75519 2.98414 3.02936 3.14201 3.37927 3.58322 3.81991 4.38016 4.64274 4.66943 4.94943 4.97321 5.32601 5.62529 5.74167 5.82929 5.94968 6.06087 6.40000 6.52967 6.58855 6.75837 6.90449 7.08283 7.14609 7.33330 7.41265 7.71316 7.89007 8.15533 8.19202 8.37406 8.64495 8.70983 8.79712 9.62887 10.05062 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034674 B = 0.003100 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.330509 B = 9028.807146 C = 9766.046030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.281 4.281 11 C 0.118 3.882 12 N -0.554 5.554 13 C 0.333 3.667 14 N -0.657 5.657 15 C 0.503 3.497 16 O -0.479 6.479 17 C -0.154 4.154 18 C 0.151 3.849 19 N -0.708 5.708 20 C 0.661 3.339 21 O -0.575 6.575 22 O -0.531 6.531 23 C -0.238 4.238 24 H 0.281 0.719 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.409 0.591 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.406 0.594 33 H 0.428 0.572 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -2.366 7.427 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.305 4.305 11 C -0.036 4.036 12 N -0.273 5.273 13 C 0.109 3.891 14 N -0.303 5.303 15 C 0.287 3.713 16 O -0.349 6.349 17 C -0.195 4.195 18 C 0.029 3.971 19 N -0.368 5.368 20 C 0.412 3.588 21 O -0.464 6.464 22 O -0.341 6.341 23 C -0.263 4.263 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.244 0.756 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.241 0.759 33 H 0.288 0.712 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.184 -3.943 7.149 13.847 hybrid contribution 0.071 2.000 0.134 2.006 sum -11.113 -1.943 7.283 13.428 Atomic orbital electron populations 1.69735 1.07574 1.29199 1.35693 1.25950 0.94892 1.01470 0.91969 0.86201 0.80448 0.80117 0.79332 1.19378 1.20055 1.18430 1.19585 0.95865 0.89988 1.43052 0.90037 1.17599 0.90380 0.92296 0.86474 1.21942 1.04155 0.94407 1.09990 1.21760 0.90533 0.96579 0.94771 1.67174 1.15033 1.28075 1.17002 1.18196 0.86584 0.90965 0.93404 1.43402 1.23534 1.08886 1.54486 1.20210 0.86583 0.84299 0.80253 1.90825 1.62758 1.32510 1.48794 1.21819 0.96784 0.97846 1.03054 1.21082 0.81354 0.95779 0.98887 1.44604 1.22102 1.06186 1.63952 1.17744 0.79523 0.84461 0.77031 1.91096 1.64647 1.33094 1.57532 1.84163 1.34195 1.40837 1.74899 1.21670 1.00932 0.95518 1.08181 0.90807 0.87909 0.85803 0.75617 0.88209 0.88094 0.89849 0.89923 0.75889 0.71194 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.02 10.70 55.55 0.59 -18.43 16 2 C 0.08 1.77 5.31 -17.34 -0.09 1.68 16 3 Si 0.91 17.57 29.57 -169.99 -5.03 12.54 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 7 C -0.45 -11.43 9.14 -37.65 -0.34 -11.77 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 9 C 0.14 3.63 5.60 -106.55 -0.60 3.04 16 10 C -0.28 -6.80 9.90 -38.71 -0.38 -7.18 16 11 C 0.12 2.80 11.15 -17.68 -0.20 2.60 16 12 N -0.55 -13.87 7.89 -12.52 -0.10 -13.97 16 13 C 0.33 7.81 7.40 -154.70 -1.15 6.66 16 14 N -0.66 -11.90 5.39 -11.49 -0.06 -11.96 16 15 C 0.50 8.55 7.78 -10.99 -0.09 8.46 16 16 O -0.48 -10.41 14.28 5.56 0.08 -10.33 16 17 C -0.15 -1.60 5.82 -27.89 -0.16 -1.77 16 18 C 0.15 1.80 4.96 -4.04 -0.02 1.78 16 19 N -0.71 -6.81 5.56 -65.28 -0.36 -7.17 16 20 C 0.66 7.61 9.12 54.05 0.49 8.10 16 21 O -0.57 -9.08 17.13 -19.28 -0.33 -9.41 16 22 O -0.53 -4.17 13.48 -40.30 -0.54 -4.71 16 23 C -0.24 -5.85 8.61 -38.48 -0.33 -6.18 16 24 H 0.28 6.07 8.29 -40.82 -0.34 5.73 16 25 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 26 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 27 H 0.41 5.85 8.70 -40.82 -0.36 5.50 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.17 8.10 -51.93 -0.42 0.74 16 31 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.41 2.64 8.58 -40.82 -0.35 2.29 16 33 H 0.43 1.54 9.11 45.56 0.42 1.95 16 34 H 0.13 3.23 6.11 -52.48 -0.32 2.91 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -34.65 307.36 -6.67 -41.32 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -2.69 Total: 12.07 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.86 Total: 5.42 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.07 Total: -51.52 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.79 Total: -24.45 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.65 -6.67 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831109075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.116 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds