Wall clock time and date at job start Tue Mar 31 2020 01:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48501 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47328 * 300.00496 * 3 2 1 6 6 H 1.48499 * 109.47077 * 60.00145 * 3 2 1 7 7 C 1.38950 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99721 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99760 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00046 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99741 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46868 * 180.02562 * 12 10 9 14 14 C 1.39673 * 119.99758 * 180.02562 * 13 12 10 15 15 C 1.38983 * 120.04142 * 359.96896 * 14 13 12 16 16 C 1.38124 * 120.06297 * 180.02562 * 15 14 13 17 17 C 1.38190 * 120.14666 * 0.02562 * 16 15 14 18 18 C 1.38899 * 120.07311 * 0.02562 * 17 16 15 19 19 N 1.39957 * 120.02959 * 180.02562 * 18 17 16 20 20 C 1.34771 * 119.99890 * 144.89013 * 19 18 17 21 21 O 1.21510 * 120.00485 * 4.62720 * 20 19 18 22 22 O 1.34654 * 119.99718 * 184.62138 * 20 19 18 23 23 C 1.38750 * 119.94181 * 359.97438 * 18 17 16 24 24 H 0.97000 * 119.99946 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00354 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47636 * 59.99623 * 12 10 9 27 27 H 1.09005 * 109.46542 * 299.99469 * 12 10 9 28 28 H 0.97001 * 120.00396 * 359.97438 * 13 12 10 29 29 H 1.07996 * 119.96898 * 0.02562 * 15 14 13 30 30 H 1.08007 * 119.92788 * 179.97438 * 16 15 14 31 31 H 1.07996 * 119.96319 * 179.97438 * 17 16 15 32 32 H 0.97005 * 119.99722 * 324.89101 * 19 18 17 33 33 H 0.96698 * 116.99735 * 180.02562 * 22 20 19 34 34 H 1.07998 * 120.07434 * 179.72663 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1959 -5.9764 -0.0004 14 6 1.7303 -7.2932 -0.0013 15 6 0.3641 -7.5482 -0.0022 16 6 -0.0968 -8.8502 -0.0026 17 6 0.7981 -9.9032 -0.0015 18 6 2.1647 -9.6552 0.0005 19 7 3.0703 -10.7223 0.0011 20 6 4.2352 -10.6180 -0.6685 21 8 4.5373 -9.5690 -1.2023 22 8 5.0643 -11.6761 -0.7459 23 6 2.6314 -8.3485 0.0009 24 1 -0.4850 0.8401 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6175 -4.9205 -0.8913 27 1 0.6170 -4.9208 0.8887 28 1 3.1496 -5.7992 0.0000 29 1 -0.3378 -6.7274 -0.0027 30 1 -1.1590 -9.0459 -0.0029 31 1 0.4344 -10.9201 -0.0013 32 1 2.8594 -11.5371 0.4835 33 1 5.8885 -11.5530 -1.2366 34 1 3.6936 -8.1532 0.0069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:52 Heat of formation + Delta-G solvation = -117.161607 kcal Electronic energy + Delta-G solvation = -20390.927810 eV Core-core repulsion = 16901.544044 eV Total energy + Delta-G solvation = -3489.383767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.82221 -40.56428 -39.82811 -37.47675 -36.72173 -36.06555 -35.05837 -33.39320 -31.41422 -30.17183 -28.19201 -26.19161 -24.74460 -23.11366 -22.14319 -21.08841 -20.16886 -20.00960 -18.76724 -18.40006 -17.50305 -17.23271 -17.06217 -16.71558 -16.35098 -16.21694 -15.69840 -15.56668 -14.79552 -14.66259 -14.41443 -14.37747 -14.00121 -13.56057 -13.52503 -12.95046 -12.69576 -12.52421 -12.50655 -12.45483 -12.13666 -11.83391 -11.59822 -11.41691 -10.77525 -10.55613 -10.10511 -9.27717 -8.52951 -8.32775 -6.02601 0.39391 0.72280 1.31066 1.33473 1.41026 1.54823 1.70955 1.91020 2.20711 2.43867 2.99751 3.14349 3.16043 3.62630 4.10524 4.19645 4.32264 4.40482 4.45503 4.49930 4.58633 4.70910 4.82250 5.29115 5.36494 5.40040 5.48143 5.67015 5.69602 5.88037 6.02260 6.33456 6.40252 6.51511 6.73575 7.03603 7.33011 7.43799 7.96821 8.64185 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032487 B = 0.003068 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.680770 B = 9125.531362 C = 9924.384700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.994 3.006 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.339 4.339 8 H 0.079 0.921 9 N -0.559 5.559 10 C 0.428 3.572 11 O -0.633 6.633 12 C 0.130 3.870 13 N -0.737 5.737 14 C 0.220 3.780 15 C -0.220 4.220 16 C -0.046 4.046 17 C -0.193 4.193 18 C 0.189 3.811 19 N -0.634 5.634 20 C 0.661 3.339 21 O -0.600 6.600 22 O -0.510 6.510 23 C -0.222 4.222 24 H 0.281 0.719 25 H 0.401 0.599 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.399 0.601 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.434 0.566 33 H 0.449 0.551 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -22.904 0.843 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.818 3.182 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.195 5.195 10 C 0.215 3.785 11 O -0.521 6.521 12 C 0.002 3.998 13 N -0.367 5.367 14 C 0.115 3.885 15 C -0.243 4.243 16 C -0.065 4.065 17 C -0.215 4.215 18 C 0.095 3.905 19 N -0.289 5.289 20 C 0.414 3.586 21 O -0.491 6.491 22 O -0.322 6.322 23 C -0.247 4.247 24 H 0.090 0.910 25 H 0.236 0.764 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.235 0.765 29 H 0.152 0.848 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.274 0.726 33 H 0.313 0.687 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.577 -22.236 0.770 22.305 hybrid contribution 1.113 0.956 -0.168 1.477 sum -0.465 -21.279 0.602 21.293 Atomic orbital electron populations 1.69663 1.06789 1.29578 1.49324 1.26061 0.96575 1.02433 0.95774 0.84856 0.77963 0.76923 0.78498 1.19938 1.19429 1.19344 1.19715 0.92779 0.83849 1.50517 0.90285 1.41820 1.09568 1.04444 1.63645 1.20718 0.88169 0.86394 0.83213 1.90486 1.15969 1.87684 1.57982 1.20844 0.91568 0.83347 1.04029 1.44535 1.08917 1.01824 1.81471 1.17873 0.93647 0.83453 0.93478 1.20988 0.92440 0.99223 1.11669 1.21059 1.00832 0.90338 0.94239 1.20906 0.89307 1.01342 1.09975 1.17236 0.88962 0.85064 0.99267 1.41729 1.15693 1.19109 1.52324 1.17929 0.81389 0.81504 0.77760 1.91116 1.75865 1.30491 1.51633 1.84137 1.35617 1.38470 1.74018 1.20555 0.99293 0.91601 1.13271 0.90986 0.76442 0.88474 0.88143 0.76533 0.84764 0.82058 0.82485 0.72600 0.68691 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.28 13.05 21.66 0.28 -48.00 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 10 C 0.43 20.48 7.85 87.66 0.69 21.17 16 11 O -0.63 -35.50 15.24 -3.06 -0.05 -35.55 16 12 C 0.13 4.60 5.39 85.63 0.46 5.06 16 13 N -0.74 -26.70 5.70 -343.19 -1.96 -28.65 16 14 C 0.22 6.90 6.65 38.20 0.25 7.16 16 15 C -0.22 -5.45 9.31 22.42 0.21 -5.24 16 16 C -0.05 -0.85 10.03 22.23 0.22 -0.62 16 17 C -0.19 -3.46 9.96 22.42 0.22 -3.23 16 18 C 0.19 4.46 6.30 38.12 0.24 4.70 16 19 N -0.63 -11.77 5.34 -429.52 -2.29 -14.06 16 20 C 0.66 14.74 8.97 129.79 1.16 15.90 16 21 O -0.60 -19.33 14.57 19.81 0.29 -19.04 16 22 O -0.51 -6.91 13.48 -55.63 -0.75 -7.66 16 23 C -0.22 -6.93 8.53 22.52 0.19 -6.74 16 24 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 26 H 0.10 3.03 7.95 -2.39 -0.02 3.01 16 27 H 0.10 3.06 7.95 -2.38 -0.02 3.04 16 28 H 0.40 16.38 7.45 -92.71 -0.69 15.69 16 29 H 0.13 2.99 6.72 -2.91 -0.02 2.97 16 30 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.43 4.61 8.93 -92.70 -0.83 3.78 16 33 H 0.45 2.44 9.11 -74.06 -0.67 1.76 16 34 H 0.11 4.02 6.23 -2.91 -0.02 4.00 16 Total: -1.00 -75.76 305.53 -0.86 -76.62 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -1.72 Total: 41.97 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 4.94 Total: 19.87 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -5.59 Total: -120.72 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -0.51 Total: -62.24 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -75.76 -0.86 -76.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.545 kcal (2) G-P(sol) polarization free energy of solvation -75.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds