Wall clock time and date at job start Tue Mar 31 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 O 1.42895 * 109.47503 * 240.00043 * 2 1 3 13 13 C 1.34929 * 117.00310 * 89.99688 * 12 2 1 14 14 O 1.21635 * 119.99909 * 0.02562 * 13 12 2 15 15 C 1.46170 * 120.00112 * 180.02562 * 13 12 2 16 16 C 1.35364 * 119.99918 * 180.02562 * 15 13 12 17 17 C 1.46285 * 119.99718 * 180.02562 * 16 15 13 18 18 C 1.38114 * 125.82332 * 179.71791 * 17 16 15 19 19 C 1.39806 * 106.83207 * 179.84183 * 18 17 16 20 20 C 1.37729 * 106.89676 * 0.41029 * 19 18 17 21 21 C 1.47037 * 125.76635 * 179.76332 * 20 19 18 22 22 N 1.34766 * 120.00030 * 180.02562 * 21 20 19 23 23 O 1.21651 * 119.99474 * 359.97438 * 21 20 19 24 24 O 1.34581 * 125.83170 * 0.02562 * 17 16 15 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.07996 * 119.99808 * 359.97438 * 15 13 12 30 30 H 1.07998 * 119.99535 * 359.97438 * 16 15 13 31 31 H 1.08000 * 126.58112 * 359.96334 * 18 17 16 32 32 H 1.07988 * 126.55174 * 180.12693 * 19 18 17 33 33 H 0.97001 * 120.00111 * 359.97438 * 22 21 20 34 34 H 0.97005 * 120.00042 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 8 2.0064 -0.6736 -1.1667 13 6 2.2106 0.0788 -2.2680 14 8 1.9901 1.2746 -2.2371 15 6 2.6967 -0.5432 -3.4982 16 6 2.9020 0.2117 -4.6029 17 6 3.3880 -0.4109 -5.8342 18 6 3.6327 0.2404 -7.0273 19 6 4.0850 -0.7260 -7.9307 20 6 4.0907 -1.9292 -7.2604 21 6 4.4915 -3.2260 -7.8256 22 7 4.4514 -4.3354 -7.0615 23 8 4.8584 -3.2976 -8.9833 24 8 3.6674 -1.7170 -5.9996 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 2.8928 -1.6049 -3.5255 30 1 2.7062 1.2734 -4.5754 31 1 3.5018 1.2942 -7.2240 32 1 4.3706 -0.5614 -8.9591 33 1 4.1585 -4.2783 -6.1386 34 1 4.7155 -5.1910 -7.4345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853106804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:17 Heat of formation + Delta-G solvation = -123.798768 kcal Electronic energy + Delta-G solvation = -20205.881698 eV Core-core repulsion = 16683.917371 eV Total energy + Delta-G solvation = -3521.964327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.71592 -41.32735 -40.33812 -37.88880 -35.33714 -35.27863 -34.77303 -34.10820 -31.75995 -30.35490 -27.47938 -26.55681 -24.21907 -22.98889 -22.47982 -21.53079 -20.62166 -19.48140 -18.92528 -18.66405 -17.98296 -17.54852 -17.35097 -16.83852 -16.62773 -16.38186 -15.59638 -15.50817 -15.01730 -14.31223 -14.21484 -14.13987 -14.06076 -13.72443 -13.35429 -13.23888 -13.00172 -12.83662 -12.38511 -12.15918 -11.79560 -11.72352 -11.59573 -11.54216 -11.07127 -10.96560 -10.87538 -10.59320 -9.29989 -8.28414 -6.45517 -0.89033 0.33456 1.34182 1.34651 1.42811 1.44652 1.56265 1.99250 1.99894 2.07789 2.39752 2.45398 3.02354 3.45731 3.74668 3.84159 4.01876 4.04966 4.45000 4.49504 4.55216 4.68939 4.78774 4.81905 4.87213 5.05205 5.17878 5.27633 5.48587 5.56534 5.63079 5.76524 5.91266 6.06617 6.22012 6.59057 6.92939 7.03894 7.26691 8.79342 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028991 B = 0.002994 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.590664 B = 9350.329188 C =10048.215457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.213 3.787 3 H 0.009 0.991 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.983 3.017 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.262 1.262 12 O -0.352 6.352 13 C 0.478 3.522 14 O -0.549 6.549 15 C -0.167 4.167 16 C 0.023 3.977 17 C 0.019 3.981 18 C -0.159 4.159 19 C -0.122 4.122 20 C -0.084 4.084 21 C 0.609 3.391 22 N -0.822 5.822 23 O -0.559 6.559 24 O -0.155 6.155 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.271 0.729 29 H 0.160 0.840 30 H 0.176 0.824 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.419 0.581 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -6.440 -18.523 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.186 1.186 12 O -0.268 6.268 13 C 0.326 3.674 14 O -0.443 6.443 15 C -0.186 4.186 16 C 0.005 3.995 17 C -0.032 4.032 18 C -0.178 4.178 19 C -0.142 4.142 20 C -0.137 4.137 21 C 0.394 3.606 22 N -0.386 5.386 23 O -0.439 6.439 24 O -0.051 6.051 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.178 0.822 30 H 0.193 0.807 31 H 0.213 0.787 32 H 0.197 0.803 33 H 0.250 0.750 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.657 -6.133 -18.825 20.591 hybrid contribution -0.024 -0.210 1.241 1.259 sum 5.633 -6.343 -17.584 19.523 Atomic orbital electron populations 1.22023 0.96859 1.00419 1.00914 1.19978 0.92127 0.92407 0.79562 0.97368 1.21329 1.33459 1.13969 0.89995 0.91380 1.25837 0.94679 0.95677 1.02184 1.70015 1.36492 1.23705 1.25231 0.85178 0.78122 0.78962 0.77128 1.19734 1.20078 1.18624 1.86169 1.76102 1.43262 1.21243 1.21868 0.74614 0.85162 0.85729 1.90802 1.50483 1.17584 1.85403 1.22398 1.04445 1.02437 0.89333 1.21722 0.90914 1.00231 0.86632 1.21146 1.05040 0.80837 0.96219 1.22662 1.02189 1.02643 0.90304 1.22433 0.99651 0.90041 1.02100 1.22598 1.10421 0.97163 0.83555 1.16615 0.76898 0.82340 0.84751 1.43607 1.68150 1.09940 1.16893 1.90909 1.49810 1.85583 1.17617 1.84031 1.64259 1.27201 1.29645 0.93567 0.95597 0.90138 0.91980 0.82243 0.80709 0.78732 0.80252 0.74982 0.74580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.40 9.31 71.98 0.67 -6.73 16 2 C 0.21 11.67 2.51 29.85 0.07 11.74 16 3 H 0.01 0.52 7.11 -2.39 -0.02 0.50 16 4 C -0.55 -31.10 8.89 25.60 0.23 -30.87 16 5 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.37 11.32 21.44 0.24 -52.13 16 8 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 12 O -0.35 -16.80 9.75 -58.45 -0.57 -17.37 16 13 C 0.48 19.50 7.83 69.88 0.55 20.05 16 14 O -0.55 -25.23 15.47 19.39 0.30 -24.93 16 15 C -0.17 -4.69 9.80 23.67 0.23 -4.46 16 16 C 0.02 0.51 9.64 23.70 0.23 0.74 16 17 C 0.02 0.36 7.02 24.33 0.17 0.53 16 18 C -0.16 -2.38 10.88 22.62 0.25 -2.14 16 19 C -0.12 -2.01 10.64 22.53 0.24 -1.77 16 20 C -0.08 -1.58 7.16 24.46 0.18 -1.41 16 21 C 0.61 11.48 8.07 86.55 0.70 12.18 16 22 N -0.82 -9.31 8.87 -176.16 -1.56 -10.88 16 23 O -0.56 -14.08 17.70 -4.19 -0.07 -14.16 16 24 O -0.16 -3.01 10.01 -8.91 -0.09 -3.09 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.02 1.21 8.14 -2.39 -0.02 1.20 16 27 H 0.08 4.43 6.07 -2.38 -0.01 4.41 16 28 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.16 3.80 7.78 -2.91 -0.02 3.77 16 30 H 0.18 3.57 7.52 -2.91 -0.02 3.55 16 31 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.18 2.40 8.06 -2.92 -0.02 2.38 16 33 H 0.42 3.44 8.58 -92.71 -0.80 2.65 16 34 H 0.42 3.21 8.93 -92.70 -0.83 2.38 16 Total: -1.00 -72.19 315.56 3.77 -68.42 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -0.46 Total: 10.51 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 3.96 Total: -0.82 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -1.32 Total: -63.01 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.43 Total: -59.55 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.19 3.77 -68.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853106804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.379 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds