Wall clock time and date at job start Tue Mar 31 2020 01:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 120.00156 * 2 1 4 4 H 1.48505 * 109.46904 * 240.00040 * 3 2 1 5 5 H 1.48494 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46964 * 119.99974 * 3 2 1 7 7 C 1.38956 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99690 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99787 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99993 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99686 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46776 * 179.97438 * 12 10 9 14 14 C 1.34763 * 117.00007 * 180.02562 * 13 12 10 15 15 O 1.21521 * 119.99447 * 0.02562 * 14 13 12 16 16 C 1.47285 * 120.00200 * 180.02562 * 14 13 12 17 17 C 1.41350 * 126.42538 * 359.97438 * 16 14 13 18 18 N 1.30431 * 108.01251 * 180.24651 * 17 16 14 19 19 N 1.39935 * 108.91787 * 359.64324 * 18 17 16 20 20 C 1.46494 * 125.74588 * 180.18845 * 19 18 17 21 21 C 1.52997 * 117.50285 * 163.82344 * 20 19 18 22 22 C 1.52998 * 60.00196 * 252.51178 * 21 20 19 23 23 C 1.34226 * 108.51001 * 0.36186 * 19 18 17 24 24 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99899 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.46794 * 60.00567 * 12 10 9 27 27 H 1.08991 * 109.47613 * 300.00051 * 12 10 9 28 28 H 1.08002 * 125.99154 * 359.97438 * 17 16 14 29 29 H 1.09002 * 115.54959 * 309.53899 * 20 19 18 30 30 H 1.09005 * 117.49597 * 0.02562 * 21 20 19 31 31 H 1.09005 * 117.50075 * 145.02172 * 21 20 19 32 32 H 1.08996 * 117.49826 * 252.50558 * 22 21 20 33 33 H 1.09001 * 117.51714 * 107.47932 * 22 21 20 34 34 H 1.08008 * 126.29375 * 179.76259 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0011 13 8 2.1872 -5.9665 0.0004 14 6 1.6721 -7.2119 0.0003 15 8 0.4674 -7.3710 0.0003 16 6 2.5693 -8.3799 0.0001 17 6 3.9825 -8.3527 -0.0004 18 7 4.4096 -9.5851 -0.0058 19 7 3.3074 -10.4473 -0.0006 20 6 3.3659 -11.9111 -0.0001 21 6 2.0935 -12.6689 0.3838 22 6 3.2770 -12.6212 1.3522 23 6 2.1876 -9.7073 0.0000 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6168 -4.9208 -0.8886 27 1 0.6173 -4.9205 0.8913 28 1 4.6003 -7.4668 -0.0012 29 1 4.0069 -12.3562 -0.7611 30 1 1.2126 -12.0782 0.6357 31 1 1.8969 -13.6128 -0.1248 32 1 3.8591 -13.5337 1.4807 33 1 3.1753 -11.9993 2.2415 34 1 1.1743 -10.0811 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859889747.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:09 Heat of formation + Delta-G solvation = -10.811872 kcal Electronic energy + Delta-G solvation = -20249.080183 eV Core-core repulsion = 16764.308087 eV Total energy + Delta-G solvation = -3484.772096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66048 -39.81279 -38.04799 -37.59290 -35.88904 -33.94899 -31.59900 -31.32781 -30.68485 -28.29233 -25.07645 -24.16311 -23.24969 -22.51282 -20.75044 -20.16069 -19.49961 -18.32515 -18.00930 -16.73308 -16.40098 -16.15626 -16.03970 -15.32962 -14.96858 -14.49105 -14.42519 -13.94617 -13.80295 -13.46886 -13.11454 -12.84792 -12.23139 -12.19310 -12.01028 -11.58233 -11.55737 -11.45149 -11.07860 -11.04074 -10.45905 -10.30544 -10.29365 -10.21815 -9.76735 -9.55257 -8.93694 -8.46516 -8.03852 -6.45875 -3.87714 1.19663 1.85694 1.98898 2.82339 3.03762 3.18627 3.25517 3.26493 3.30913 3.79637 3.90499 4.07093 4.16433 4.27806 4.42877 4.64525 4.83802 4.95833 5.08419 5.13583 5.19598 5.21402 5.29781 5.39641 5.50171 5.73348 5.77758 6.12016 6.27641 6.52568 6.72816 7.32948 7.51563 7.94781 8.07180 8.53555 9.11360 9.44214 9.94471 10.71412 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.054706 B = 0.002762 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.705067 B =10135.691744 C =10548.702751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.105 0.895 9 N -0.554 5.554 10 C 0.440 3.560 11 O -0.575 6.575 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.541 3.459 15 O -0.527 6.527 16 C -0.272 4.272 17 C 0.109 3.891 18 N -0.295 5.295 19 N -0.337 5.337 20 C 0.078 3.922 21 C -0.170 4.170 22 C -0.173 4.173 23 C 0.133 3.867 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.205 0.795 29 H 0.145 0.855 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -23.678 0.653 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.225 3.775 11 O -0.459 6.459 12 C -0.015 4.015 13 O -0.235 6.235 14 C 0.386 3.614 15 O -0.418 6.418 16 C -0.285 4.285 17 C -0.079 4.079 18 N -0.113 5.113 19 N -0.114 5.114 20 C -0.024 4.024 21 C -0.208 4.208 22 C -0.211 4.211 23 C -0.018 4.018 24 H 0.084 0.916 25 H 0.228 0.772 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.221 0.779 29 H 0.162 0.838 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.830 -24.415 0.640 24.587 hybrid contribution -1.190 1.441 -0.009 1.869 sum 1.640 -22.975 0.632 23.042 Atomic orbital electron populations 1.69607 1.05984 1.28521 1.49784 1.25305 0.95680 0.99831 0.96973 0.85862 0.78740 0.80124 0.79179 1.19775 1.20919 1.19770 1.19676 0.93446 0.81791 1.48173 0.87676 1.41696 1.09364 1.04074 1.64001 1.19335 0.88339 0.84086 0.85778 1.90556 1.13424 1.86817 1.55131 1.22724 0.90827 0.84404 1.03510 1.86584 1.39809 1.13742 1.83353 1.19974 0.86152 0.82893 0.72335 1.90811 1.15925 1.87047 1.48025 1.19305 0.93578 0.90899 1.24762 1.24451 0.93473 0.95722 0.94291 1.77308 1.08480 1.00219 1.25343 1.47873 1.03867 1.05432 1.54201 1.21839 1.04507 0.74462 1.01641 1.23496 0.92471 1.02158 1.02696 1.23503 1.01079 1.02768 0.93712 1.22822 0.93393 0.90230 0.95378 0.91624 0.77155 0.89535 0.89535 0.77861 0.83789 0.87418 0.86297 0.86778 0.87712 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16 11 O -0.58 -16.08 16.08 -14.11 -0.23 -16.31 16 12 C 0.06 1.23 5.95 36.01 0.21 1.44 16 13 O -0.32 -6.20 9.60 -47.35 -0.45 -6.66 16 14 C 0.54 9.23 7.95 34.41 0.27 9.50 16 15 O -0.53 -9.58 16.69 -19.28 -0.32 -9.90 16 16 C -0.27 -3.87 6.13 -105.08 -0.64 -4.51 16 17 C 0.11 1.48 11.87 -16.96 -0.20 1.28 16 18 N -0.30 -3.89 12.50 30.87 0.39 -3.51 16 19 N -0.34 -3.58 3.90 -54.30 -0.21 -3.79 16 20 C 0.08 0.52 7.12 -67.93 -0.48 0.04 16 21 C -0.17 -0.70 9.97 -26.73 -0.27 -0.96 16 22 C -0.17 -0.87 10.46 -26.73 -0.28 -1.15 16 23 C 0.13 1.48 10.62 -16.55 -0.18 1.31 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 26 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.20 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.45 6.98 -51.93 -0.36 0.08 16 31 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.19 1.56 7.20 -52.48 -0.38 1.19 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -34.35 315.55 -5.85 -40.20 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.53 Total: 7.51 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.89 Total: 9.60 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.84 Total: -45.06 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.00 Total: -32.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.35 -5.85 -40.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859889747.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.393 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds