Wall clock time and date at job start Tue Mar 31 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34867 * 117.00332 * 2 1 4 4 O 1.21578 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.46834 * 119.99923 * 179.97438 * 3 2 1 6 6 C 1.37805 * 125.77723 * 179.97438 * 5 3 2 7 7 C 1.39766 * 106.88818 * 179.79782 * 6 5 3 8 8 C 1.38108 * 106.85208 * 0.38421 * 7 6 5 9 9 C 1.46344 * 125.81705 * 179.87920 * 8 7 6 10 10 C 1.35234 * 119.99751 * 179.70895 * 9 8 7 11 11 C 1.46404 * 119.99883 * 179.72439 * 10 9 8 12 12 O 1.21703 * 120.00004 * 0.28055 * 11 10 9 13 13 N 1.34777 * 120.00144 * 180.28132 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47138 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99613 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47001 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48497 * 109.47104 * 240.00206 * 19 17 15 23 23 O 1.34562 * 108.36401 * 359.61089 * 8 7 6 24 24 H 1.08993 * 109.47131 * 300.00583 * 1 2 3 25 25 H 1.09004 * 109.46483 * 60.00285 * 1 2 3 26 26 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 27 27 H 1.07997 * 126.55664 * 0.06406 * 6 5 3 28 28 H 1.08003 * 126.58142 * 180.24151 * 7 6 5 29 29 H 1.08001 * 120.00419 * 359.71723 * 9 8 7 30 30 H 1.08002 * 120.00360 * 0.02562 * 10 9 8 31 31 H 0.97000 * 120.00140 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47424 * 299.99527 * 14 13 11 33 33 H 1.08998 * 109.47492 * 59.99952 * 14 13 11 34 34 H 0.97006 * 119.99306 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2016 0.0000 4 8 1.4023 2.2213 -0.0005 5 6 3.5307 1.2784 0.0006 6 6 4.2768 2.4370 0.0001 7 6 5.6211 2.0542 0.0057 8 6 5.6442 0.6734 0.0004 9 6 6.8451 -0.1630 0.0009 10 6 6.7305 -1.5105 0.0013 11 6 7.9318 -2.3473 -0.0042 12 8 9.0336 -1.8302 -0.0041 13 7 7.8177 -3.6902 -0.0096 14 6 9.0198 -4.5275 -0.0146 15 6 8.6200 -5.9805 -0.0194 16 1 7.5749 -6.2530 -0.0191 17 6 9.5882 -6.9620 -0.0251 18 7 10.8609 -6.6302 -0.0259 19 14 9.0926 -8.7630 -0.0317 20 1 7.6114 -8.8688 -0.0303 21 1 9.6341 -9.4210 -1.2479 22 1 9.6382 -9.4310 1.1771 23 8 4.3744 0.2281 0.0007 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.8958 3.4475 0.0003 28 1 6.4776 2.7121 0.0105 29 1 7.8228 0.2958 0.0011 30 1 5.7528 -1.9694 0.0009 31 1 6.9396 -4.1024 -0.0093 32 1 9.6104 -4.3100 -0.9045 33 1 9.6129 -4.3172 0.8754 34 1 11.5421 -7.3208 -0.0303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:22 Heat of formation + Delta-G solvation = -93.726576 kcal Electronic energy + Delta-G solvation = -19841.082182 eV Core-core repulsion = 16320.421883 eV Total energy + Delta-G solvation = -3520.660299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.91149 -40.52065 -38.93228 -36.91442 -34.46403 -33.86299 -33.37550 -32.37600 -30.10488 -28.15975 -27.29733 -24.89997 -23.09333 -22.15175 -21.56009 -20.58599 -19.42716 -18.73293 -17.52345 -17.22863 -17.12472 -16.27106 -16.10234 -15.60427 -14.99996 -14.45762 -14.37147 -14.33123 -13.64263 -13.49837 -13.44971 -13.34820 -12.62977 -12.53964 -12.26951 -11.99716 -11.96005 -11.25373 -11.23303 -10.98811 -10.96334 -10.71062 -10.35966 -10.26961 -9.43644 -9.32955 -8.79371 -8.42666 -7.93839 -6.20607 -4.27722 0.08029 1.18363 1.89227 2.37369 2.52835 2.61612 3.21724 3.28955 3.32008 3.78970 3.84476 4.28062 4.39171 4.45190 4.61929 4.72224 4.81101 5.04483 5.11322 5.15957 5.18930 5.27412 5.38150 5.58660 5.75417 5.83874 6.03761 6.18626 6.55265 7.23503 7.25137 7.31428 7.44919 7.61134 7.91508 8.51314 8.70399 8.96644 9.38856 10.89647 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002861 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.848332 B = 9785.799116 C =10988.191405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.347 6.347 3 C 0.555 3.445 4 O -0.490 6.490 5 C -0.074 4.074 6 C -0.099 4.099 7 C -0.200 4.200 8 C 0.069 3.931 9 C -0.044 4.044 10 C -0.146 4.146 11 C 0.523 3.477 12 O -0.554 6.554 13 N -0.699 5.699 14 C 0.247 3.753 15 C -0.545 4.545 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 O -0.141 6.141 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.132 0.868 31 H 0.394 0.606 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 15.461 0.064 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.400 3.600 4 O -0.379 6.379 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.219 4.219 8 C 0.016 3.984 9 C -0.064 4.064 10 C -0.167 4.167 11 C 0.309 3.691 12 O -0.435 6.435 13 N -0.346 5.346 14 C 0.126 3.874 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 O -0.036 6.036 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.185 0.815 28 H 0.186 0.814 29 H 0.185 0.815 30 H 0.150 0.850 31 H 0.227 0.773 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.113 15.647 0.063 23.188 hybrid contribution -0.805 -1.084 -0.005 1.350 sum -17.918 14.563 0.057 23.090 Atomic orbital electron populations 1.23383 0.75161 1.04327 1.02832 1.86679 1.24115 1.31638 1.83859 1.19236 0.85431 0.82165 0.73177 1.90934 1.64345 1.35935 1.46733 1.20991 0.87769 0.86063 1.17610 1.22105 0.92279 0.98559 0.98866 1.22225 0.97783 0.93485 1.08397 1.21575 0.82297 0.93164 1.01377 1.21549 0.93417 0.92679 0.98767 1.23586 0.99612 0.94677 0.98803 1.18177 0.88677 0.83386 0.78881 1.90792 1.27654 1.73714 1.51362 1.46445 1.12289 1.05261 1.70580 1.19192 0.81920 0.88240 0.98024 1.21257 0.93484 0.90244 1.53304 0.91739 1.24957 0.94726 0.99725 0.94615 1.69988 0.99635 1.33763 1.48860 0.86342 0.78717 0.83976 0.77778 1.19590 1.20769 1.20763 1.84156 1.15383 1.34446 1.69598 0.91495 0.91503 0.87506 0.81493 0.81380 0.81488 0.85029 0.77319 0.95174 0.95179 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.69 10.58 -42.45 -0.45 -4.13 16 3 C 0.55 6.43 7.94 34.21 0.27 6.70 16 4 O -0.49 -6.22 16.66 -19.32 -0.32 -6.54 16 5 C -0.07 -0.85 7.21 -36.26 -0.26 -1.11 16 6 C -0.10 -0.95 10.64 -39.17 -0.42 -1.37 16 7 C -0.20 -1.88 10.88 -39.06 -0.42 -2.30 16 8 C 0.07 0.79 7.02 -36.37 -0.26 0.53 16 9 C -0.04 -0.55 9.64 -37.39 -0.36 -0.91 16 10 C -0.15 -2.08 9.67 -37.37 -0.36 -2.44 16 11 C 0.52 10.12 7.74 -12.97 -0.10 10.02 16 12 O -0.55 -12.75 16.24 5.19 0.08 -12.67 16 13 N -0.70 -14.39 5.54 -62.89 -0.35 -14.74 16 14 C 0.25 6.41 5.43 -5.19 -0.03 6.39 16 15 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 19 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 O -0.14 -1.75 10.29 3.56 0.04 -1.71 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.17 2.00 7.53 -52.49 -0.39 1.61 16 30 H 0.13 1.60 7.78 -52.49 -0.41 1.19 16 31 H 0.39 6.91 8.30 -40.82 -0.34 6.57 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -33.08 321.25 -5.36 -38.45 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.63 Total: 2.36 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.29 Total: 3.58 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.39 Total: -39.76 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.65 Total: -25.06 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.08 -5.36 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.281 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds