Wall clock time and date at job start Tue Mar 31 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34867 * 117.00332 * 2 1 4 4 O 1.21578 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.46834 * 119.99923 * 179.97438 * 3 2 1 6 6 C 1.37805 * 125.77723 * 179.97438 * 5 3 2 7 7 C 1.39766 * 106.88818 * 179.79782 * 6 5 3 8 8 C 1.38108 * 106.85208 * 0.38421 * 7 6 5 9 9 C 1.46344 * 125.81705 * 179.87920 * 8 7 6 10 10 C 1.35234 * 119.99751 * 179.70895 * 9 8 7 11 11 C 1.46404 * 119.99883 * 179.72439 * 10 9 8 12 12 O 1.21703 * 120.00004 * 0.28055 * 11 10 9 13 13 N 1.34777 * 120.00144 * 180.28132 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47138 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99613 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47001 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48497 * 109.47104 * 240.00206 * 19 17 15 23 23 O 1.34562 * 108.36401 * 359.61089 * 8 7 6 24 24 H 1.08993 * 109.47131 * 300.00583 * 1 2 3 25 25 H 1.09004 * 109.46483 * 60.00285 * 1 2 3 26 26 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 27 27 H 1.07997 * 126.55664 * 0.06406 * 6 5 3 28 28 H 1.08003 * 126.58142 * 180.24151 * 7 6 5 29 29 H 1.08001 * 120.00419 * 359.71723 * 9 8 7 30 30 H 1.08002 * 120.00360 * 0.02562 * 10 9 8 31 31 H 0.97000 * 120.00140 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47424 * 299.99527 * 14 13 11 33 33 H 1.08998 * 109.47492 * 59.99952 * 14 13 11 34 34 H 0.97006 * 119.99306 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2016 0.0000 4 8 1.4023 2.2213 -0.0005 5 6 3.5307 1.2784 0.0006 6 6 4.2768 2.4370 0.0001 7 6 5.6211 2.0542 0.0057 8 6 5.6442 0.6734 0.0004 9 6 6.8451 -0.1630 0.0009 10 6 6.7305 -1.5105 0.0013 11 6 7.9318 -2.3473 -0.0042 12 8 9.0336 -1.8302 -0.0041 13 7 7.8177 -3.6902 -0.0096 14 6 9.0198 -4.5275 -0.0146 15 6 8.6200 -5.9805 -0.0194 16 1 7.5749 -6.2530 -0.0191 17 6 9.5882 -6.9620 -0.0251 18 7 10.8609 -6.6302 -0.0259 19 14 9.0926 -8.7630 -0.0317 20 1 7.6114 -8.8688 -0.0303 21 1 9.6341 -9.4210 -1.2479 22 1 9.6382 -9.4310 1.1771 23 8 4.3744 0.2281 0.0007 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.8958 3.4475 0.0003 28 1 6.4776 2.7121 0.0105 29 1 7.8228 0.2958 0.0011 30 1 5.7528 -1.9694 0.0009 31 1 6.9396 -4.1024 -0.0093 32 1 9.6104 -4.3100 -0.9045 33 1 9.6129 -4.3172 0.8754 34 1 11.5421 -7.3208 -0.0303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:21 Heat of formation + Delta-G solvation = -116.465618 kcal Electronic energy + Delta-G solvation = -19842.068221 eV Core-core repulsion = 16320.421883 eV Total energy + Delta-G solvation = -3521.646337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.76452 -41.34673 -40.54872 -37.73540 -36.25682 -35.03376 -34.37657 -34.21148 -31.07809 -29.53262 -28.48841 -26.12454 -24.60330 -23.20591 -22.63704 -21.70329 -20.79788 -19.57094 -18.95605 -18.27225 -17.95589 -17.75640 -17.24845 -16.91733 -16.44280 -16.09690 -16.09128 -15.14098 -14.86356 -14.36481 -14.28174 -14.16823 -14.08605 -13.98370 -13.67282 -13.37537 -13.11477 -12.88374 -12.76117 -12.22737 -12.10696 -11.93282 -11.72816 -11.46624 -11.10620 -11.00097 -10.82277 -9.91657 -9.29563 -8.29765 -6.46010 -0.88647 0.25084 1.09714 1.39521 1.44036 1.44835 1.58383 1.69382 1.82295 2.30703 2.35165 2.52808 3.05609 3.39619 3.69238 3.72279 4.03390 4.08524 4.22305 4.31508 4.37350 4.51329 4.68132 4.71544 4.87588 5.02303 5.06212 5.18663 5.23282 5.25860 5.45468 5.66267 5.68794 5.83675 6.42831 6.64224 6.83665 7.21890 7.39989 8.82661 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002861 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.848332 B = 9785.799116 C =10988.191405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.555 3.445 4 O -0.506 6.506 5 C -0.086 4.086 6 C -0.093 4.093 7 C -0.172 4.172 8 C 0.041 3.959 9 C -0.005 4.005 10 C -0.170 4.170 11 C 0.526 3.474 12 O -0.599 6.599 13 N -0.699 5.699 14 C 0.263 3.737 15 C -0.557 4.557 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.985 3.015 20 H -0.254 1.254 21 H -0.279 1.279 22 H -0.279 1.279 23 O -0.155 6.155 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.191 0.809 28 H 0.200 0.800 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.410 0.590 32 H -0.007 1.007 33 H -0.007 1.007 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.002 16.007 0.067 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.401 3.599 4 O -0.397 6.397 5 C -0.137 4.137 6 C -0.112 4.112 7 C -0.191 4.191 8 C -0.011 4.011 9 C -0.024 4.024 10 C -0.191 4.191 11 C 0.315 3.685 12 O -0.483 6.483 13 N -0.347 5.347 14 C 0.141 3.859 15 C -0.595 4.595 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.808 3.192 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.204 1.204 23 O -0.050 6.050 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.208 0.792 28 H 0.217 0.783 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.246 0.754 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.414 16.201 0.066 25.286 hybrid contribution -0.194 -1.037 -0.006 1.055 sum -19.608 15.164 0.060 24.788 Atomic orbital electron populations 1.23708 0.73192 1.06223 1.03332 1.86669 1.26165 1.31218 1.83461 1.19304 0.85574 0.82254 0.72793 1.90919 1.64704 1.36385 1.47673 1.21313 0.87970 0.86619 1.17764 1.22483 0.92108 0.99108 0.97547 1.22665 0.98708 0.92740 1.04951 1.21496 0.81751 0.93844 1.04011 1.21661 0.94292 0.92115 0.94372 1.23173 0.97890 0.94621 1.03423 1.18881 0.89754 0.83028 0.76845 1.90759 1.29944 1.74316 1.53263 1.46155 1.11370 1.05666 1.71488 1.18624 0.83278 0.89474 0.94547 1.21650 0.94508 0.90421 1.52889 0.89854 1.26049 0.94520 1.05130 0.93844 1.70140 1.01122 1.35626 1.49971 0.85112 0.79207 0.77213 0.77698 1.17726 1.20436 1.20424 1.84127 1.15751 1.35095 1.70073 0.91011 0.91023 0.85000 0.79206 0.78276 0.81011 0.82840 0.75406 0.98924 0.98929 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -7.16 10.58 -56.37 -0.60 -7.75 16 3 C 0.55 12.07 7.94 70.07 0.56 12.63 16 4 O -0.51 -12.09 16.66 19.58 0.33 -11.76 16 5 C -0.09 -1.82 7.21 24.42 0.18 -1.64 16 6 C -0.09 -1.51 10.64 22.54 0.24 -1.27 16 7 C -0.17 -2.63 10.88 22.61 0.25 -2.39 16 8 C 0.04 0.84 7.02 24.35 0.17 1.02 16 9 C 0.00 -0.11 9.64 23.69 0.23 0.12 16 10 C -0.17 -4.75 9.67 23.70 0.23 -4.52 16 11 C 0.53 20.84 7.74 86.37 0.67 21.51 16 12 O -0.60 -28.66 16.24 -4.36 -0.07 -28.73 16 13 N -0.70 -29.55 5.54 -471.10 -2.61 -32.16 16 14 C 0.26 14.36 5.43 85.63 0.46 14.82 16 15 C -0.56 -30.15 9.28 25.60 0.24 -29.91 16 16 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 17 C 0.00 0.23 5.46 84.65 0.46 0.70 16 18 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 19 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 23 O -0.15 -3.57 10.29 -8.86 -0.09 -3.66 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.17 3.87 7.53 -2.91 -0.02 3.85 16 30 H 0.15 3.55 7.78 -2.91 -0.02 3.53 16 31 H 0.41 14.39 8.30 -92.71 -0.77 13.63 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -74.06 321.25 4.52 -69.55 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.37 Total: 13.21 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 4.88 Total: 12.59 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.33 Total: -87.56 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.43 Total: -51.91 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -74.06 4.52 -69.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.918 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds