Wall clock time and date at job start Tue Mar 31 2020 00:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34863 * 117.00225 * 2 1 4 4 O 1.21576 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.46833 * 120.00257 * 180.02562 * 3 2 1 6 6 C 1.37813 * 125.77851 * 180.02562 * 5 3 2 7 7 C 1.39766 * 106.88611 * 179.78098 * 6 5 3 8 8 C 1.38103 * 106.85306 * 0.38033 * 7 6 5 9 9 C 1.46354 * 125.81969 * 179.87823 * 8 7 6 10 10 C 1.35223 * 120.00144 * 187.10020 * 9 8 7 11 11 C 1.46405 * 120.00400 * 28.39509 * 10 9 8 12 12 O 1.21701 * 119.99604 * 7.69701 * 11 10 9 13 13 N 1.34772 * 120.00463 * 187.70201 * 11 10 9 14 14 C 1.46499 * 120.00370 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47315 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99970 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99675 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47104 * 90.00618 * 19 17 15 21 21 H 1.48504 * 109.46769 * 210.00138 * 19 17 15 22 22 H 1.48496 * 109.47118 * 329.99902 * 19 17 15 23 23 O 1.34560 * 108.36702 * 359.61587 * 8 7 6 24 24 H 1.08995 * 109.47002 * 299.99452 * 1 2 3 25 25 H 1.08999 * 109.47194 * 59.99924 * 1 2 3 26 26 H 1.09008 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.07997 * 126.55854 * 0.02562 * 6 5 3 28 28 H 1.08005 * 126.57531 * 180.23356 * 7 6 5 29 29 H 1.08000 * 119.99621 * 7.09785 * 9 8 7 30 30 H 1.08002 * 120.00065 * 208.39608 * 10 9 8 31 31 H 0.97001 * 119.99639 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47185 * 300.00132 * 14 13 11 33 33 H 1.09004 * 109.46998 * 59.99856 * 14 13 11 34 34 H 0.96993 * 119.99841 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2016 0.0000 4 8 1.4022 2.2213 0.0005 5 6 3.5306 1.2785 -0.0006 6 6 4.2767 2.4372 -0.0001 7 6 5.6210 2.0544 0.0042 8 6 5.6441 0.6736 -0.0026 9 6 6.8451 -0.1628 -0.0037 10 6 6.7361 -1.5021 -0.1553 11 6 5.6125 -2.0648 -0.9065 12 8 4.8557 -1.3286 -1.5118 13 7 5.4162 -3.3980 -0.9277 14 6 4.2922 -3.9611 -1.6798 15 6 4.2976 -5.4618 -1.5429 16 1 5.0616 -5.9476 -0.9540 17 6 3.3271 -6.2148 -2.1693 18 7 3.3315 -7.5244 -2.0493 19 14 2.0052 -5.3745 -3.1871 20 1 2.4662 -5.2522 -4.5934 21 1 0.7591 -6.1811 -3.1430 22 1 1.7393 -4.0223 -2.6338 23 8 4.3744 0.2282 -0.0021 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.8956 3.4477 0.0011 28 1 6.4774 2.7124 0.0092 29 1 7.8183 0.2896 0.1165 30 1 7.4780 -2.1567 0.2777 31 1 6.0196 -3.9848 -0.4455 32 1 3.3564 -3.5634 -1.2869 33 1 4.3879 -3.6923 -2.7319 34 1 2.6490 -8.0541 -2.4902 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:24 Heat of formation + Delta-G solvation = -76.241478 kcal Electronic energy + Delta-G solvation = -21271.326781 eV Core-core repulsion = 17751.424693 eV Total energy + Delta-G solvation = -3519.902088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.49024 -40.14482 -38.93500 -36.52426 -34.50051 -33.69951 -32.93655 -32.35385 -29.83547 -28.21617 -27.39329 -24.62204 -22.79442 -21.78184 -21.27619 -20.44923 -19.38138 -18.41754 -17.51401 -16.94309 -16.70580 -16.21183 -15.68390 -15.53355 -14.74548 -14.48279 -14.10941 -13.96776 -13.69622 -13.27751 -13.17469 -13.02146 -12.75567 -12.33991 -12.28171 -12.15718 -12.11095 -11.01587 -10.89527 -10.83651 -10.78300 -10.25150 -9.97651 -9.90111 -9.50097 -9.32421 -8.77860 -8.22912 -7.95305 -6.21905 -4.23866 0.26507 1.34025 2.34068 2.58914 2.88517 3.04744 3.26075 3.32869 3.42392 3.74793 4.03545 4.33447 4.46545 4.77354 4.79752 5.08138 5.13762 5.14425 5.16719 5.31684 5.47156 5.52556 5.55386 5.71820 5.91352 6.03377 6.21056 6.31483 6.83002 6.94391 7.08833 7.21874 7.39102 7.64398 8.12531 8.50323 8.74413 8.91894 9.38490 10.90102 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.005699 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.668119 B = 4911.750699 C = 6450.593536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.338 6.338 3 C 0.555 3.445 4 O -0.498 6.498 5 C -0.061 4.061 6 C -0.116 4.116 7 C -0.207 4.207 8 C 0.065 3.935 9 C -0.039 4.039 10 C -0.167 4.167 11 C 0.516 3.484 12 O -0.537 6.537 13 N -0.695 5.695 14 C 0.221 3.779 15 C -0.543 4.543 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 O -0.097 6.097 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.144 0.856 31 H 0.397 0.603 32 H 0.028 0.972 33 H 0.020 0.980 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 17.124 6.412 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.253 6.253 3 C 0.400 3.600 4 O -0.388 6.388 5 C -0.113 4.113 6 C -0.135 4.135 7 C -0.226 4.226 8 C 0.011 3.989 9 C -0.059 4.059 10 C -0.188 4.188 11 C 0.303 3.697 12 O -0.417 6.417 13 N -0.343 5.343 14 C 0.098 3.902 15 C -0.581 4.581 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.530 5.530 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.183 1.183 23 O 0.011 5.989 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.231 0.769 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.168 17.368 5.909 18.617 hybrid contribution -0.500 0.037 -0.425 0.658 sum 2.668 17.405 5.483 18.443 Atomic orbital electron populations 1.23370 0.75506 1.04375 1.02455 1.86767 1.23809 1.31349 1.83379 1.19323 0.85681 0.82126 0.72859 1.90892 1.64567 1.36026 1.47337 1.21102 0.88142 0.86530 1.15561 1.21965 0.92334 0.98258 1.00988 1.22097 0.97528 0.93451 1.09560 1.21379 0.83440 0.92510 1.01542 1.21504 0.93406 0.92168 0.98786 1.23635 1.00836 0.95943 0.98364 1.18399 0.84923 0.83375 0.83054 1.90821 1.46011 1.59224 1.45671 1.46115 1.31319 1.05815 1.51054 1.19504 0.84945 0.94300 0.91406 1.21098 1.14733 0.88665 1.33624 0.90241 1.24781 0.97340 0.94682 0.95730 1.69877 1.34969 1.04700 1.43461 0.86846 0.81486 0.80443 0.81143 1.19896 1.20889 1.18349 1.84514 1.14674 1.32927 1.66801 0.91695 0.91630 0.87514 0.82027 0.82067 0.81855 0.83782 0.76947 0.95390 0.96170 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.57 101.05 1.07 1.52 16 2 O -0.34 -5.81 10.58 -42.44 -0.45 -6.26 16 3 C 0.55 9.41 7.94 34.21 0.27 9.68 16 4 O -0.50 -8.49 16.66 -19.32 -0.32 -8.81 16 5 C -0.06 -1.01 7.21 -36.26 -0.26 -1.27 16 6 C -0.12 -1.53 10.64 -39.17 -0.42 -1.94 16 7 C -0.21 -2.41 10.88 -39.06 -0.42 -2.84 16 8 C 0.07 0.93 6.25 -36.37 -0.23 0.71 16 9 C -0.04 -0.44 10.02 -37.39 -0.37 -0.81 16 10 C -0.17 -2.16 9.99 -37.37 -0.37 -2.53 16 11 C 0.52 9.79 7.26 -12.98 -0.09 9.69 16 12 O -0.54 -12.15 13.10 -19.44 -0.25 -12.40 16 13 N -0.70 -14.05 5.54 -62.89 -0.35 -14.40 16 14 C 0.22 5.46 4.50 -5.20 -0.02 5.44 16 15 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 19 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 23 O -0.10 -1.76 7.33 -22.27 -0.16 -1.92 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.11 1.14 8.14 -51.92 -0.42 0.72 16 27 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.40 6.92 8.30 -40.82 -0.34 6.58 16 32 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 33 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -35.42 311.81 -5.67 -41.09 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.64 Total: 2.33 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.29 Total: 4.53 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.42 Total: -40.11 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.19 Total: -29.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.42 -5.67 -41.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.148 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds