Wall clock time and date at job start Tue Mar 31 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34660 * 117.00183 * 2 1 4 4 O 1.21403 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.48262 * 119.99895 * 180.27042 * 3 2 1 6 6 C 1.39335 * 119.56750 * 179.72070 * 5 3 2 7 7 C 1.38454 * 119.18823 * 180.02562 * 6 5 3 8 8 C 1.39905 * 118.35369 * 359.97438 * 7 6 5 9 9 C 1.47911 * 120.46044 * 179.97438 * 8 7 6 10 10 O 1.21442 * 120.00428 * 0.02562 * 9 8 7 11 11 O 1.34692 * 119.99930 * 180.02562 * 9 8 7 12 12 C 1.45194 * 117.00241 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47574 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00053 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99920 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99807 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47034 * 90.00084 * 18 16 14 20 20 H 1.48500 * 109.47043 * 209.99901 * 18 16 14 21 21 H 1.48495 * 109.47106 * 329.99701 * 18 16 14 22 22 C 1.39784 * 119.07442 * 0.02562 * 8 7 6 23 23 N 1.31392 * 120.71572 * 359.72273 * 22 8 7 24 24 H 1.08998 * 109.47461 * 300.00626 * 1 2 3 25 25 H 1.09004 * 109.46605 * 60.00825 * 1 2 3 26 26 H 1.09001 * 109.47216 * 179.97438 * 1 2 3 27 27 H 1.07993 * 120.40233 * 359.97438 * 6 5 3 28 28 H 1.08004 * 120.82119 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.46879 * 299.99788 * 12 11 9 30 30 H 1.08996 * 109.47391 * 59.99823 * 12 11 9 31 31 H 1.08999 * 109.46412 * 299.99929 * 13 12 11 32 32 H 1.09001 * 109.46828 * 59.99092 * 13 12 11 33 33 H 0.96996 * 119.99855 * 180.02562 * 17 16 14 34 34 H 1.07996 * 119.64001 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5439 1.2773 -0.0061 6 6 4.1671 2.5235 -0.0119 7 6 5.5502 2.5868 -0.0181 8 6 6.2702 1.3872 -0.0176 9 6 7.7492 1.4004 -0.0247 10 8 8.3471 2.4574 -0.0304 11 8 8.4331 0.2400 -0.0247 12 6 9.8823 0.3288 -0.0312 13 6 10.4797 -1.0798 -0.0296 14 6 11.9839 -0.9875 -0.0370 15 1 12.4656 -0.0209 -0.0427 16 6 12.7451 -2.1371 -0.0364 17 7 12.1584 -3.3141 -0.0289 18 14 14.6095 -2.0227 -0.0463 19 1 15.1106 -1.9871 1.3511 20 1 15.1743 -3.2054 -0.7446 21 1 15.0258 -0.7850 -0.7532 22 6 5.5723 0.1761 -0.0116 23 7 4.2585 0.1586 -0.0009 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.5785 3.4289 -0.0125 28 1 6.0606 3.5386 -0.0223 29 1 10.2096 0.8617 -0.9240 30 1 10.2174 0.8662 0.8559 31 1 10.1524 -1.6121 0.8635 32 1 10.1446 -1.6175 -0.9165 33 1 12.6939 -4.1229 -0.0281 34 1 6.1189 -0.7553 -0.0116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875625661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:42 Heat of formation + Delta-G solvation = -156.103240 kcal Electronic energy + Delta-G solvation = -20068.315003 eV Core-core repulsion = 16544.949849 eV Total energy + Delta-G solvation = -3523.365154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24573 -41.49462 -40.48745 -37.80288 -37.69218 -35.44901 -34.08847 -33.24332 -32.18396 -29.12878 -27.50245 -26.37994 -24.92403 -23.57978 -22.77563 -22.02539 -19.75225 -19.14405 -18.62304 -18.34038 -17.86651 -17.66847 -17.53587 -16.97321 -16.52288 -16.03676 -15.50317 -15.29858 -14.91497 -14.60263 -14.41561 -14.37001 -14.14511 -13.86666 -13.16973 -13.05700 -13.03586 -12.62490 -12.59260 -12.10045 -12.07265 -11.86473 -11.60050 -11.50617 -11.41507 -11.31792 -10.89705 -10.64881 -10.58952 -8.25627 -6.38261 -1.22185 -0.08801 0.77545 1.36081 1.42181 1.44179 1.49146 1.50798 1.57449 2.40715 2.50684 2.83239 3.09418 3.37569 3.50801 3.61781 3.67114 3.77552 4.23445 4.24875 4.26108 4.34225 4.46279 4.57849 4.70464 4.72969 4.78034 5.09626 5.14307 5.20425 5.47050 5.49734 5.74703 6.07881 6.19762 6.51277 6.58877 6.75901 7.31537 8.86841 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.037608 B = 0.002755 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.353038 B =10160.442095 C =10879.038679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.345 6.345 3 C 0.526 3.474 4 O -0.507 6.507 5 C 0.105 3.895 6 C -0.102 4.102 7 C -0.006 4.006 8 C -0.148 4.148 9 C 0.509 3.491 10 O -0.524 6.524 11 O -0.354 6.354 12 C 0.091 3.909 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.159 3.841 23 N -0.456 5.456 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.186 0.814 28 H 0.180 0.820 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.267 0.733 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.200 9.483 0.043 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.369 3.631 4 O -0.395 6.395 5 C -0.031 4.031 6 C -0.122 4.122 7 C -0.032 4.032 8 C -0.151 4.151 9 C 0.353 3.647 10 O -0.414 6.414 11 O -0.270 6.270 12 C 0.019 3.981 13 C -0.008 4.008 14 C -0.587 4.587 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.566 5.566 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.002 4.002 23 N -0.167 5.167 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.203 0.797 28 H 0.198 0.802 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.693 9.072 0.048 23.513 hybrid contribution 1.363 0.501 0.001 1.452 sum -20.330 9.573 0.049 22.471 Atomic orbital electron populations 1.23714 0.73673 1.06151 1.03187 1.86680 1.25572 1.31046 1.82624 1.20791 0.87704 0.82055 0.72535 1.90845 1.66024 1.36496 1.46146 1.20554 0.91371 0.90844 1.00331 1.22261 0.94304 0.98769 0.96836 1.22011 0.93013 0.98688 0.89443 1.20483 0.89926 0.97194 1.07498 1.21216 0.88839 0.82037 0.72578 1.90808 1.71243 1.32754 1.46629 1.86538 1.23960 1.33616 1.82850 1.23279 0.72811 1.00505 1.01552 1.19000 0.94632 0.90187 0.96980 1.21378 0.91507 0.93465 1.52318 0.91565 1.25931 1.04366 0.94764 0.94198 1.70087 1.37779 0.98227 1.50468 0.85356 0.78471 0.78072 0.78616 1.19636 1.20589 1.18700 1.23443 0.88648 0.98389 0.89695 1.67784 1.07985 1.30287 1.10657 0.91116 0.91127 0.85079 0.79718 0.80227 0.91636 0.91626 0.97254 0.97250 0.92377 0.79424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.34 -6.91 10.38 -55.69 -0.58 -7.49 16 3 C 0.53 11.28 7.95 70.49 0.56 11.84 16 4 O -0.51 -11.60 16.10 20.15 0.32 -11.28 16 5 C 0.10 2.24 6.75 41.94 0.28 2.53 16 6 C -0.10 -1.72 9.62 22.59 0.22 -1.50 16 7 C -0.01 -0.11 9.71 22.73 0.22 0.11 16 8 C -0.15 -3.59 5.90 -19.94 -0.12 -3.71 16 9 C 0.51 16.15 7.91 70.38 0.56 16.70 16 10 O -0.52 -18.52 16.20 20.02 0.32 -18.20 16 11 O -0.35 -12.98 9.50 -56.01 -0.53 -13.51 16 12 C 0.09 3.84 5.41 71.98 0.39 4.23 16 13 C 0.03 1.50 5.35 29.85 0.16 1.66 16 14 C -0.55 -30.16 9.11 25.60 0.23 -29.93 16 15 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 16 C 0.01 0.36 5.46 84.65 0.46 0.82 16 17 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 18 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 C 0.16 3.79 10.78 85.13 0.92 4.71 16 23 N -0.46 -11.04 10.10 -183.90 -1.86 -12.90 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.19 2.19 7.63 -2.91 -0.02 2.17 16 28 H 0.18 2.69 7.73 -2.91 -0.02 2.67 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.19 4.34 7.62 -2.91 -0.02 4.31 16 Total: -1.00 -67.46 316.92 6.20 -61.27 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.12 Total: 2.55 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.08 Total: 8.95 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -1.57 Total: -67.10 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.46 Total: -50.48 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.46 6.20 -61.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875625661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.837 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds