Wall clock time and date at job start Tue Mar 31 2020 00:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46955 * 2 1 4 4 C 1.50697 * 109.46893 * 120.00231 * 2 1 3 5 5 H 1.08002 * 120.00354 * 120.00380 * 4 2 1 6 6 C 1.37884 * 119.99682 * 299.99905 * 4 2 1 7 7 N 1.31520 * 119.99283 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00161 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47061 * 90.00063 * 8 6 4 10 10 H 1.48505 * 109.47039 * 209.99824 * 8 6 4 11 11 H 1.48494 * 109.47284 * 330.00023 * 8 6 4 12 12 N 1.46894 * 109.47102 * 240.00244 * 2 1 3 13 13 C 1.46901 * 110.99995 * 183.95724 * 12 2 1 14 14 C 1.46903 * 111.00355 * 59.99983 * 12 2 1 15 15 C 1.50700 * 109.47114 * 192.07713 * 14 12 2 16 16 C 1.38298 * 120.35237 * 254.48447 * 15 14 12 17 17 C 1.40083 * 118.30294 * 180.27544 * 16 15 14 18 18 C 1.43197 * 120.55209 * 179.97438 * 17 16 15 19 19 N 8.08262 * 114.83312 * 262.13242 * 2 1 3 20 20 C 1.39613 * 118.89662 * 0.02562 * 17 16 15 21 21 N 1.31673 * 120.57150 * 0.02562 * 20 17 16 22 22 C 1.32056 * 121.86262 * 359.97438 * 21 20 17 23 23 Cl 1.73602 * 119.46631 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.46812 * 59.99928 * 1 2 3 25 25 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46930 * 299.99949 * 1 2 3 27 27 H 0.96998 * 119.99172 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46948 * 302.50620 * 13 12 2 29 29 H 1.08994 * 109.47546 * 62.51042 * 13 12 2 30 30 H 1.09005 * 109.47022 * 182.51209 * 13 12 2 31 31 H 1.09002 * 109.46614 * 72.08112 * 14 12 2 32 32 H 1.08995 * 109.46789 * 312.07881 * 14 12 2 33 33 H 1.07997 * 120.84424 * 0.26158 * 16 15 14 34 34 H 1.08006 * 119.71633 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9758 1.9951 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.8120 -0.9135 -3.6104 16 6 2.8395 -0.6191 -4.4881 17 6 3.0424 -1.4697 -5.5824 18 6 4.0919 -1.2100 -6.5214 19 7 4.9246 -1.0041 -7.2662 20 6 2.2037 -2.5742 -5.7431 21 7 1.2376 -2.8126 -4.8807 22 6 1.0229 -2.0284 -3.8401 23 17 -0.2693 -2.4009 -2.7423 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9033 -0.5280 4.4375 28 1 3.9182 0.2031 -1.1141 29 1 3.8006 -1.3910 -0.3310 30 1 3.8239 -1.2713 -2.1068 31 1 2.0789 0.9177 -2.5476 32 1 0.4788 0.1657 -2.3408 33 1 3.4692 0.2446 -4.3337 34 1 2.3486 -3.2390 -6.5819 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876689842.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:28 Heat of formation + Delta-G solvation = 78.356846 kcal Electronic energy + Delta-G solvation = -19112.626967 eV Core-core repulsion = 16072.430682 eV Total energy + Delta-G solvation = -3040.196286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72914 -37.54582 -36.93492 -36.40280 -33.71555 -32.55412 -31.75346 -30.02045 -27.40979 -24.97559 -24.70001 -23.97857 -22.50985 -19.71488 -18.62278 -17.49237 -17.28132 -16.82094 -15.56095 -15.07984 -14.35752 -14.22571 -14.04829 -13.82806 -13.66359 -13.57894 -13.28612 -12.96506 -12.81772 -12.41742 -12.20357 -11.91276 -11.57525 -11.29136 -11.05312 -10.82584 -10.68705 -10.55764 -10.18765 -10.07965 -9.92174 -9.55643 -9.16588 -8.94431 -8.60992 -7.51777 -6.11329 -4.10511 0.18474 0.82259 1.83598 2.31069 2.60554 3.22690 3.31261 3.34814 3.45568 3.49114 4.12813 4.34777 4.36094 4.53140 4.57001 4.87160 5.11958 5.20404 5.37200 5.53612 5.75423 5.79924 5.93280 6.01949 6.18020 6.31348 6.38696 6.48537 6.71019 6.81323 7.09878 7.18629 7.37890 7.49138 7.79587 7.93861 8.57192 8.95368 9.49895 11.01302 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.005012 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.667822 B = 5585.140829 C = 6150.870278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.185 3.815 3 H 0.000 1.000 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.516 5.516 13 C 0.036 3.964 14 C 0.080 3.920 15 C -0.100 4.100 16 C -0.014 4.014 17 C -0.087 4.087 18 C 0.262 3.738 19 N -0.410 5.410 20 C 0.164 3.836 21 N -0.478 5.478 22 C 0.219 3.781 23 Cl 0.007 6.993 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.017 0.983 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 0.457 -16.190 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.078 3.922 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.102 0.898 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.240 5.240 13 C -0.112 4.112 14 C -0.049 4.049 15 C -0.103 4.103 16 C -0.042 4.042 17 C -0.093 4.093 18 C -0.054 4.054 19 N -0.085 5.085 20 C 0.003 3.997 21 N -0.188 5.188 22 C 0.055 3.945 23 Cl 0.037 6.963 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.169 0.831 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.944 -0.457 -17.112 17.228 hybrid contribution -0.164 2.154 0.758 2.289 sum -2.108 1.697 -16.354 16.577 Atomic orbital electron populations 1.22240 0.98454 1.01536 0.98188 1.19700 0.91495 0.92608 0.88384 0.98280 1.20938 1.32065 1.13636 0.87719 0.89810 1.24912 0.95775 0.96540 0.95821 1.69876 1.45562 1.40218 0.97909 0.86913 0.80874 0.83835 0.76868 1.20489 1.22538 1.19440 1.61999 1.10124 1.51520 1.00338 1.22279 0.87665 0.99770 1.01533 1.21192 1.02668 0.92941 0.88088 1.20627 0.94976 0.96682 0.98047 1.21593 0.94665 0.97689 0.90301 1.16970 0.96364 1.00327 0.95590 1.25272 0.92927 0.94008 0.93166 1.81282 1.10011 1.07518 1.09732 1.22775 0.87767 0.93020 0.96147 1.67224 1.19156 1.29389 1.02989 1.21924 0.91649 0.90556 0.90359 1.98467 1.45686 1.93914 1.58282 0.95195 0.91838 0.93999 0.92583 0.96453 0.89687 0.93940 0.93845 0.88512 0.83110 0.81049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.48 37.16 0.31 -2.64 16 2 C 0.18 3.99 1.65 -68.87 -0.11 3.88 16 3 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 4 C -0.51 -13.24 8.54 -34.44 -0.29 -13.53 16 5 H 0.08 2.40 6.64 -52.49 -0.35 2.05 16 6 C 0.07 1.96 5.45 -17.81 -0.10 1.86 16 7 N -0.90 -26.44 13.96 55.43 0.77 -25.66 16 8 Si 0.88 20.97 24.37 -169.99 -4.14 16.82 16 9 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 12 N -0.52 -9.34 4.47 -237.73 -1.06 -10.40 16 13 C 0.04 0.62 9.05 60.07 0.54 1.16 16 14 C 0.08 1.13 4.27 -4.97 -0.02 1.11 16 15 C -0.10 -1.23 4.51 -104.50 -0.47 -1.70 16 16 C -0.01 -0.14 8.87 -38.87 -0.34 -0.48 16 17 C -0.09 -0.81 5.75 -106.77 -0.61 -1.42 16 18 C 0.26 2.67 15.37 -22.48 -0.35 2.32 16 19 N -0.41 -5.04 18.54 41.84 0.78 -4.26 16 20 C 0.16 1.53 10.92 -17.11 -0.19 1.34 16 21 N -0.48 -5.79 10.32 -9.99 -0.10 -5.89 16 22 C 0.22 2.89 7.27 -17.36 -0.13 2.77 16 23 Cl 0.01 0.11 27.67 -51.86 -1.44 -1.33 16 24 H 0.03 0.50 6.16 -51.93 -0.32 0.18 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.04 0.89 3.27 -51.93 -0.17 0.72 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 1.68 6.33 -51.93 -0.33 1.36 16 30 H 0.04 0.62 6.65 -51.93 -0.35 0.28 16 31 H 0.04 0.56 7.95 -51.93 -0.41 0.15 16 32 H 0.10 1.37 5.20 -51.93 -0.27 1.10 16 33 H 0.15 1.23 8.04 -52.49 -0.42 0.81 16 34 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -29.51 300.06 -5.87 -35.38 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: -3.44 Total: -3.85 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.76 Total: -5.33 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.38 Total: -46.22 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.82 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.44 Total: -1.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.51 -5.87 -35.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876689842.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.739 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds