Wall clock time and date at job start Tue Mar 31 2020 00:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46955 * 2 1 4 4 C 1.50697 * 109.46893 * 120.00231 * 2 1 3 5 5 H 1.08002 * 120.00354 * 120.00380 * 4 2 1 6 6 C 1.37884 * 119.99682 * 299.99905 * 4 2 1 7 7 N 1.31520 * 119.99283 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00161 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47061 * 90.00063 * 8 6 4 10 10 H 1.48505 * 109.47039 * 209.99824 * 8 6 4 11 11 H 1.48494 * 109.47284 * 330.00023 * 8 6 4 12 12 N 1.46894 * 109.47102 * 240.00244 * 2 1 3 13 13 C 1.46901 * 110.99995 * 183.95724 * 12 2 1 14 14 C 1.46903 * 111.00355 * 59.99983 * 12 2 1 15 15 C 1.50700 * 109.47114 * 192.07713 * 14 12 2 16 16 C 1.38298 * 120.35237 * 254.48447 * 15 14 12 17 17 C 1.40083 * 118.30294 * 180.27544 * 16 15 14 18 18 C 1.43197 * 120.55209 * 179.97438 * 17 16 15 19 19 N 8.08262 * 114.83312 * 262.13242 * 2 1 3 20 20 C 1.39613 * 118.89662 * 0.02562 * 17 16 15 21 21 N 1.31673 * 120.57150 * 0.02562 * 20 17 16 22 22 C 1.32056 * 121.86262 * 359.97438 * 21 20 17 23 23 Cl 1.73602 * 119.46631 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.46812 * 59.99928 * 1 2 3 25 25 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46930 * 299.99949 * 1 2 3 27 27 H 0.96998 * 119.99172 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.46948 * 302.50620 * 13 12 2 29 29 H 1.08994 * 109.47546 * 62.51042 * 13 12 2 30 30 H 1.09005 * 109.47022 * 182.51209 * 13 12 2 31 31 H 1.09002 * 109.46614 * 72.08112 * 14 12 2 32 32 H 1.08995 * 109.46789 * 312.07881 * 14 12 2 33 33 H 1.07997 * 120.84424 * 0.26158 * 16 15 14 34 34 H 1.08006 * 119.71633 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9758 1.9951 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.8120 -0.9135 -3.6104 16 6 2.8395 -0.6191 -4.4881 17 6 3.0424 -1.4697 -5.5824 18 6 4.0919 -1.2100 -6.5214 19 7 4.9246 -1.0041 -7.2662 20 6 2.2037 -2.5742 -5.7431 21 7 1.2376 -2.8126 -4.8807 22 6 1.0229 -2.0284 -3.8401 23 17 -0.2693 -2.4009 -2.7423 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9033 -0.5280 4.4375 28 1 3.9182 0.2031 -1.1141 29 1 3.8006 -1.3910 -0.3310 30 1 3.8239 -1.2713 -2.1068 31 1 2.0789 0.9177 -2.5476 32 1 0.4788 0.1657 -2.3408 33 1 3.4692 0.2446 -4.3337 34 1 2.3486 -3.2390 -6.5819 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876689842.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:27 Heat of formation + Delta-G solvation = 58.283243 kcal Electronic energy + Delta-G solvation = -19113.497424 eV Core-core repulsion = 16072.430682 eV Total energy + Delta-G solvation = -3041.066742 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62150 -38.91244 -37.89774 -37.37658 -35.15339 -33.90321 -32.93914 -31.58079 -28.69168 -26.54581 -25.85199 -25.14592 -23.65426 -21.32052 -19.56249 -18.76658 -18.33554 -18.16533 -17.12896 -16.33275 -15.74981 -15.47822 -15.34118 -14.72395 -14.71618 -14.52986 -14.46033 -14.25618 -14.23369 -13.82113 -13.53069 -13.32629 -12.74587 -12.59325 -12.53166 -12.41480 -12.09810 -12.05434 -11.85607 -11.38518 -11.11328 -10.87954 -10.76801 -10.66779 -9.93009 -8.93854 -8.21715 -6.24103 -0.67065 -0.00947 0.87906 1.35727 1.39508 1.49296 1.49336 1.75429 2.37016 2.59939 2.65638 3.13037 3.26467 3.37955 3.61206 3.64075 3.86845 4.18358 4.41420 4.50793 4.58716 4.69762 4.72660 4.75363 4.83738 4.93063 4.95766 5.12520 5.20564 5.30195 5.51494 5.72653 6.05933 6.29007 6.40118 6.53991 6.73372 6.84109 7.40601 8.94572 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.005012 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.667822 B = 5585.140829 C = 6150.870278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.189 3.811 3 H -0.002 1.002 4 C -0.500 4.500 5 H 0.043 0.957 6 C 0.012 3.988 7 N -0.951 5.951 8 Si 0.944 3.056 9 H -0.269 1.269 10 H -0.305 1.305 11 H -0.245 1.245 12 N -0.528 5.528 13 C 0.042 3.958 14 C 0.082 3.918 15 C -0.111 4.111 16 C 0.001 3.999 17 C -0.077 4.077 18 C 0.289 3.711 19 N -0.443 5.443 20 C 0.178 3.822 21 N -0.496 5.496 22 C 0.209 3.791 23 Cl -0.015 7.015 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.175 0.825 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 1.833 -18.825 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.592 5.592 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.233 1.233 11 H -0.169 1.169 12 N -0.252 5.252 13 C -0.106 4.106 14 C -0.046 4.046 15 C -0.115 4.115 16 C -0.028 4.028 17 C -0.082 4.082 18 C -0.027 4.027 19 N -0.119 5.119 20 C 0.016 3.984 21 N -0.206 5.206 22 C 0.045 3.955 23 Cl 0.014 6.986 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.192 0.808 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.368 0.920 -19.789 19.952 hybrid contribution 0.068 1.613 1.429 2.156 sum -2.301 2.533 -18.360 18.676 Atomic orbital electron populations 1.22134 0.96974 1.01466 0.99406 1.19490 0.92533 0.91818 0.88037 0.98477 1.21231 1.30471 1.12194 0.89894 0.93860 1.25738 0.97441 0.99796 0.95504 1.70042 1.48035 1.42589 0.98513 0.85929 0.79307 0.80370 0.77179 1.19488 1.23324 1.16858 1.61836 1.10437 1.52130 1.00780 1.22168 0.87492 0.99652 1.01282 1.21190 1.02841 0.93853 0.86701 1.20399 0.96176 0.96659 0.98229 1.21797 0.93574 0.98015 0.89364 1.16880 0.95985 1.00218 0.95163 1.25114 0.92242 0.92956 0.92410 1.81334 1.11092 1.08639 1.10834 1.23310 0.86198 0.92971 0.95877 1.67244 1.20346 1.29669 1.03337 1.21964 0.91597 0.91225 0.90679 1.98457 1.46868 1.94107 1.59199 0.91492 0.92709 0.95081 0.92795 0.95872 0.93462 0.91128 0.91787 0.88435 0.80794 0.77852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.48 71.98 0.61 -4.84 16 2 C 0.19 7.95 1.65 44.17 0.07 8.02 16 3 H 0.00 -0.09 7.20 -2.39 -0.02 -0.11 16 4 C -0.50 -26.77 8.54 25.60 0.22 -26.55 16 5 H 0.04 2.61 6.64 -2.91 -0.02 2.60 16 6 C 0.01 0.67 5.45 84.66 0.46 1.13 16 7 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 8 Si 0.94 43.05 24.37 68.60 1.67 44.72 16 9 H -0.27 -11.75 6.87 99.48 0.68 -11.07 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.24 -10.09 6.53 99.48 0.65 -9.44 16 12 N -0.53 -18.38 4.47 -906.04 -4.05 -22.44 16 13 C 0.04 1.42 9.05 127.69 1.16 2.57 16 14 C 0.08 2.09 4.27 85.56 0.37 2.46 16 15 C -0.11 -2.40 4.51 -19.79 -0.09 -2.49 16 16 C 0.00 0.01 8.87 22.73 0.20 0.21 16 17 C -0.08 -1.14 5.75 -21.25 -0.12 -1.26 16 18 C 0.29 4.87 15.37 88.33 1.36 6.23 16 19 N -0.44 -9.71 18.54 19.00 0.35 -9.36 16 20 C 0.18 2.68 10.92 85.05 0.93 3.61 16 21 N -0.50 -10.76 10.32 -185.53 -1.92 -12.68 16 22 C 0.21 5.07 7.27 84.72 0.62 5.69 16 23 Cl -0.02 -0.42 27.67 -2.72 -0.08 -0.50 16 24 H 0.07 2.05 6.16 -2.38 -0.01 2.03 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.03 1.25 3.27 -2.39 -0.01 1.24 16 27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 1.93 6.33 -2.39 -0.02 1.91 16 30 H 0.07 1.92 6.65 -2.38 -0.02 1.91 16 31 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 32 H 0.10 2.46 5.20 -2.39 -0.01 2.45 16 33 H 0.17 2.00 8.04 -2.91 -0.02 1.98 16 34 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -66.05 300.06 3.12 -62.93 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: 1.06 Total: 0.36 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.78 Total: -5.22 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -5.32 Total: -102.29 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.67 Total: 44.72 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -66.05 3.12 -62.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876689842.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.218 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds