Wall clock time and date at job start Tue Mar 31 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38560 * 119.99696 * 2 1 4 4 N 1.29773 * 125.32375 * 179.97438 * 3 2 1 5 5 C 1.32627 * 116.94581 * 180.02562 * 4 3 2 6 6 C 1.48487 * 122.28314 * 179.97438 * 5 4 3 7 7 C 1.36457 * 126.89779 * 0.02562 * 6 5 4 8 8 N 1.35358 * 106.02760 * 180.02562 * 7 6 5 9 9 C 1.46497 * 125.76642 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46948 * 125.00243 * 9 8 7 11 11 C 1.50697 * 109.46841 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00391 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99495 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99502 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00303 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47281 * 89.99726 * 15 13 11 17 17 H 1.48498 * 109.47323 * 210.00217 * 15 13 11 18 18 H 1.48497 * 109.47064 * 330.00026 * 15 13 11 19 19 N 1.28660 * 108.46025 * 0.02562 * 8 7 6 20 20 N 1.28604 * 110.48843 * 359.71639 * 19 8 7 21 21 C 1.34294 * 115.43214 * 0.02562 * 5 4 3 22 22 S 1.76111 * 125.32809 * 0.02562 * 3 2 1 23 23 H 1.08998 * 109.46814 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47094 * 299.99960 * 1 2 3 25 25 H 1.09000 * 109.46727 * 60.00358 * 1 2 3 26 26 H 0.96992 * 120.00123 * 179.97438 * 2 1 3 27 27 H 1.07999 * 126.98891 * 0.02562 * 7 6 5 28 28 H 1.09000 * 109.46826 * 244.99705 * 9 8 7 29 29 H 1.08993 * 109.47302 * 5.00299 * 9 8 7 30 30 H 1.09001 * 109.46840 * 299.99951 * 10 9 8 31 31 H 1.09000 * 109.46895 * 59.99555 * 10 9 8 32 32 H 0.97003 * 119.99492 * 180.02562 * 14 13 11 33 33 H 1.08005 * 125.87004 * 179.73228 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1578 1.2000 0.0000 4 7 3.4499 1.3205 0.0005 5 6 3.9386 2.5535 0.0009 6 6 5.3978 2.8282 0.0020 7 6 6.4049 1.9074 0.0023 8 7 7.5586 2.6154 0.0040 9 6 8.9101 2.0500 0.0054 10 6 9.7013 2.6171 -1.1751 11 6 11.0917 2.0361 -1.1732 12 1 11.3822 1.3330 -0.4066 13 6 11.9930 2.4021 -2.1504 14 7 13.2067 1.8954 -2.1485 15 14 11.4909 3.6187 -3.4759 16 1 11.7994 4.9991 -3.0235 17 1 12.2403 3.3278 -4.7244 18 1 10.0335 3.4964 -3.7336 19 7 7.2675 3.8686 0.0053 20 7 5.9922 4.0346 -0.0014 21 6 3.0236 3.5364 0.0014 22 16 1.4226 2.8003 0.0006 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9500 -0.8400 0.0004 27 1 6.3023 0.8323 0.0013 28 1 9.4117 2.3102 0.9375 29 1 8.8503 0.9655 -0.0848 30 1 9.1996 2.3571 -2.1072 31 1 9.7609 3.7018 -1.0849 32 1 13.8409 2.1532 -2.8357 33 1 3.2330 4.5960 0.0058 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887365817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:05 Heat of formation + Delta-G solvation = 144.473447 kcal Electronic energy + Delta-G solvation = -18102.998626 eV Core-core repulsion = 15100.005829 eV Total energy + Delta-G solvation = -3002.992797 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.84848 -39.53889 -36.28126 -35.13921 -32.85820 -31.38022 -30.48732 -29.19070 -26.79098 -25.76696 -24.46558 -22.35012 -22.04134 -20.81173 -19.58440 -18.23714 -17.38182 -16.69441 -16.14387 -16.02772 -15.39273 -15.28928 -14.81383 -14.33078 -14.02818 -13.81737 -13.55398 -13.15537 -12.90331 -12.81268 -11.95430 -11.78095 -11.49223 -11.22314 -10.95210 -10.71441 -10.59468 -10.29278 -9.98876 -9.77984 -9.61876 -9.50105 -9.42191 -8.87744 -8.69009 -7.74451 -6.20691 -4.23068 0.79042 0.95306 1.63498 1.92331 2.38183 2.63925 2.86791 3.26142 3.33357 3.38763 3.48986 4.15217 4.33857 4.59607 4.88057 5.00136 5.05295 5.13529 5.14394 5.30585 5.39607 5.68392 5.73095 5.87343 6.01662 6.09184 6.28288 6.35621 6.79912 6.98574 7.04342 7.07890 7.53884 7.77804 8.27724 8.78527 8.84063 9.39415 10.91380 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.034587 B = 0.003199 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.361719 B = 8750.134428 C = 8989.241958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.698 5.698 3 C 0.346 3.654 4 N -0.536 5.536 5 C 0.199 3.801 6 C 0.021 3.979 7 C -0.011 4.011 8 N -0.275 5.275 9 C 0.121 3.879 10 C -0.021 4.021 11 C -0.531 4.531 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.894 5.894 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.072 5.072 20 N -0.266 5.266 21 C -0.256 4.256 22 S 0.051 5.949 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.415 0.585 27 H 0.193 0.807 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.672 -4.085 4.863 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.340 5.340 3 C -0.027 4.027 4 N -0.262 5.262 5 C 0.069 3.931 6 C -0.119 4.119 7 C -0.165 4.165 8 N -0.067 5.067 9 C 0.002 3.998 10 C -0.059 4.059 11 C -0.569 4.569 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.532 5.532 15 Si 0.705 3.295 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.190 1.190 19 N -0.052 5.052 20 N -0.133 5.133 21 C -0.398 4.398 22 S 0.297 5.703 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.253 0.747 27 H 0.210 0.790 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -26.773 -2.714 4.772 27.330 hybrid contribution 0.667 -0.772 -0.772 1.279 sum -26.105 -3.486 4.000 26.639 Atomic orbital electron populations 1.21757 0.77817 1.03844 1.02043 1.43600 1.05795 1.03571 1.80988 1.24123 0.89642 0.91259 0.97704 1.66122 1.09020 1.24004 1.27013 1.16695 0.90480 0.85773 1.00163 1.19265 0.91067 0.90165 1.11368 1.23623 0.84611 1.00639 1.07629 1.47921 1.09608 1.05159 1.44024 1.22571 0.74544 0.98844 1.03864 1.19880 0.96013 0.97856 0.92163 1.20786 0.93983 1.28006 1.14120 0.90412 1.24916 0.94609 0.95744 0.97454 1.69886 1.04937 1.43583 1.34756 0.86786 0.79262 0.81967 0.81437 1.19804 1.21096 1.19045 1.78246 1.08787 0.99219 1.18956 1.75199 0.98788 1.22083 1.17261 1.26280 0.91772 1.04459 1.17306 1.84771 1.10194 0.99284 1.76015 0.89271 0.92100 0.92096 0.74738 0.79048 0.88399 0.87938 0.95754 0.94852 0.92331 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 10.64 59.85 0.64 0.99 16 2 N -0.70 -5.12 5.87 -67.68 -0.40 -5.52 16 3 C 0.35 3.81 8.45 -87.66 -0.74 3.07 16 4 N -0.54 -7.47 10.46 -10.47 -0.11 -7.58 16 5 C 0.20 3.04 6.66 -84.69 -0.56 2.47 16 6 C 0.02 0.37 7.04 -83.12 -0.59 -0.21 16 7 C -0.01 -0.18 11.43 -16.64 -0.19 -0.37 16 8 N -0.28 -5.12 3.44 -60.96 -0.21 -5.33 16 9 C 0.12 2.23 6.39 -4.04 -0.03 2.20 16 10 C -0.02 -0.48 4.17 -27.88 -0.12 -0.60 16 11 C -0.53 -14.29 9.66 -34.44 -0.33 -14.62 16 12 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 15 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 19 N -0.07 -1.48 12.88 60.35 0.78 -0.70 16 20 N -0.27 -5.18 12.34 33.06 0.41 -4.77 16 21 C -0.26 -3.40 11.04 29.34 0.32 -3.08 16 22 S 0.05 0.52 22.65 -107.50 -2.43 -1.92 16 23 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.41 2.57 8.95 -40.82 -0.37 2.21 16 27 H 0.19 2.58 8.06 -52.49 -0.42 2.16 16 28 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.10 1.65 8.06 -51.93 -0.42 1.23 16 30 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 31 H 0.03 0.80 7.54 -51.93 -0.39 0.41 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.18 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -32.84 307.51 -6.59 -39.43 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.67 Total: -1.24 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.69 Total: -8.10 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 1.24 Total: -49.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.43 Total: -1.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.84 -6.59 -39.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887365817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.900 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds