Wall clock time and date at job start Tue Mar 31 2020 00:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34692 * 116.99425 * 2 1 4 4 O 1.21435 * 120.00503 * 0.02562 * 3 2 1 5 5 C 1.47910 * 119.99596 * 179.97438 * 3 2 1 6 6 C 1.39901 * 120.46484 * 180.02562 * 5 3 2 7 7 C 1.38455 * 118.35579 * 179.97438 * 6 5 3 8 8 C 1.39336 * 119.19185 * 0.02562 * 7 6 5 9 9 C 1.48256 * 119.57198 * 179.97438 * 8 7 6 10 10 O 1.21408 * 119.99673 * 359.97438 * 9 8 7 11 11 O 1.34661 * 120.00319 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00160 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47190 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47423 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99708 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00187 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00171 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46790 * 0.02562 * 18 16 14 20 20 H 1.48490 * 109.47066 * 120.00082 * 18 16 14 21 21 H 1.48503 * 109.47374 * 240.00245 * 18 16 14 22 22 N 1.32744 * 120.85663 * 359.97438 * 8 7 6 23 23 C 1.31391 * 121.80853 * 0.04305 * 22 8 7 24 24 H 1.08994 * 109.47596 * 59.99992 * 1 2 3 25 25 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47101 * 299.99366 * 1 2 3 27 27 H 1.07996 * 120.82341 * 359.95967 * 6 5 3 28 28 H 1.08002 * 120.40632 * 179.72830 * 7 6 5 29 29 H 1.09005 * 109.47181 * 300.00166 * 12 11 9 30 30 H 1.08998 * 109.47065 * 60.00272 * 12 11 9 31 31 H 1.08997 * 109.47191 * 300.00345 * 13 12 11 32 32 H 1.09006 * 109.47202 * 59.99435 * 13 12 11 33 33 H 0.97003 * 120.00135 * 179.97438 * 17 16 14 34 34 H 1.08003 * 119.64304 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5405 1.2776 0.0006 6 6 4.1857 2.5190 0.0011 7 6 5.5700 2.5406 0.0022 8 6 6.2685 1.3349 0.0021 9 6 7.7510 1.3482 0.0027 10 8 8.3485 2.4050 0.0027 11 8 8.4348 0.1881 0.0032 12 6 9.8840 0.2771 0.0031 13 6 10.4815 -1.1314 0.0031 14 6 11.9856 -1.0391 0.0024 15 1 12.4672 -0.0725 0.0025 16 6 12.7469 -2.1886 0.0028 17 7 12.1603 -3.3658 0.0032 18 14 14.6114 -2.0742 0.0012 19 1 15.0196 -0.6464 0.0003 20 1 15.1492 -2.7416 1.2137 21 1 15.1474 -2.7436 -1.2112 22 7 5.6237 0.1746 0.0016 23 6 4.3113 0.1115 0.0002 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 3.6180 3.4377 0.0005 28 1 6.1021 3.4804 -0.0018 29 1 10.2152 0.8119 -0.8871 30 1 10.2152 0.8125 0.8929 31 1 10.1503 -1.6666 0.8930 32 1 10.1502 -1.6666 -0.8869 33 1 12.6959 -4.1745 0.0031 34 1 3.8228 -0.8517 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899872696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:52 Heat of formation + Delta-G solvation = -156.429106 kcal Electronic energy + Delta-G solvation = -20062.072884 eV Core-core repulsion = 16538.693600 eV Total energy + Delta-G solvation = -3523.379284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.24090 -41.49085 -40.48446 -37.82987 -37.65308 -35.46259 -34.09094 -33.20016 -32.26993 -29.05958 -27.53768 -26.38409 -24.90952 -23.60749 -22.75216 -22.03703 -19.75478 -19.08369 -18.65708 -18.36852 -17.87046 -17.69869 -17.48517 -16.99555 -16.54279 -15.98924 -15.58689 -15.32251 -14.80305 -14.59119 -14.43812 -14.35516 -14.20095 -13.84086 -13.17771 -13.05735 -13.02682 -12.63324 -12.60415 -12.13224 -11.97845 -11.85391 -11.65676 -11.51554 -11.40840 -11.33122 -10.82473 -10.64896 -10.60693 -8.26203 -6.39765 -1.22341 -0.04951 0.79582 1.36666 1.42871 1.43725 1.48825 1.50789 1.57787 2.39639 2.52304 2.86309 3.08225 3.38127 3.51303 3.60915 3.69646 3.74594 4.19857 4.21384 4.30280 4.37572 4.49971 4.57752 4.68028 4.72523 4.78001 5.13177 5.15934 5.18888 5.43582 5.46335 5.72627 6.05683 6.28297 6.47369 6.64278 6.74531 7.30099 8.86838 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.037874 B = 0.002754 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.107069 B =10166.299678 C =10879.659066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.523 3.477 4 O -0.518 6.518 5 C -0.153 4.153 6 C -0.003 4.003 7 C -0.105 4.105 8 C 0.112 3.888 9 C 0.510 3.490 10 O -0.514 6.514 11 O -0.344 6.344 12 C 0.087 3.913 13 C 0.031 3.969 14 C -0.548 4.548 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.976 3.024 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.470 5.470 23 C 0.161 3.839 24 H 0.067 0.933 25 H 0.134 0.866 26 H 0.067 0.933 27 H 0.187 0.813 28 H 0.178 0.822 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.787 9.378 -0.015 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.367 3.633 4 O -0.408 6.408 5 C -0.156 4.156 6 C -0.028 4.028 7 C -0.125 4.125 8 C -0.023 4.023 9 C 0.353 3.647 10 O -0.404 6.404 11 O -0.259 6.259 12 C 0.014 3.986 13 C -0.006 4.006 14 C -0.586 4.586 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.567 5.567 18 Si 0.799 3.201 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.181 5.181 23 C 0.000 4.000 24 H 0.086 0.914 25 H 0.152 0.848 26 H 0.086 0.914 27 H 0.204 0.796 28 H 0.195 0.805 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -23.227 9.006 -0.014 24.912 hybrid contribution 0.439 0.484 0.001 0.654 sum -22.788 9.490 -0.013 24.685 Atomic orbital electron populations 1.23671 0.73471 1.06195 1.03029 1.86540 1.25813 1.31042 1.83395 1.20762 0.88158 0.81994 0.72349 1.90848 1.66853 1.36715 1.46407 1.20523 0.91121 0.96374 1.07588 1.22012 0.92926 0.98599 0.89268 1.22251 0.94370 0.98902 0.97004 1.20373 0.90251 0.91278 1.00417 1.21316 0.88543 0.82084 0.72748 1.90801 1.70557 1.32512 1.46487 1.86686 1.23667 1.33530 1.82026 1.23330 0.73090 1.00603 1.01575 1.18978 0.94855 0.90140 0.96669 1.21400 0.91217 0.93604 1.52356 0.91395 1.25998 1.04689 0.94678 0.94101 1.70115 1.37829 0.98296 1.50460 0.85243 0.78066 0.78819 0.77967 1.18447 1.20110 1.20100 1.67767 1.11538 1.28070 1.10708 1.23660 0.87187 0.99747 0.89421 0.91394 0.84792 0.91389 0.79598 0.80462 0.91499 0.91495 0.97647 0.97648 0.92340 0.78049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.93 9.84 -56.02 -0.55 -5.48 16 3 C 0.52 8.95 7.91 70.38 0.56 9.51 16 4 O -0.52 -10.79 16.20 20.05 0.32 -10.47 16 5 C -0.15 -2.66 5.90 -19.94 -0.12 -2.77 16 6 C 0.00 -0.04 9.71 22.72 0.22 0.18 16 7 C -0.11 -2.10 9.62 22.59 0.22 -1.88 16 8 C 0.11 3.17 6.75 41.94 0.28 3.45 16 9 C 0.51 18.44 7.95 70.49 0.56 19.00 16 10 O -0.51 -19.42 16.10 20.13 0.32 -19.09 16 11 O -0.34 -14.68 10.03 -55.70 -0.56 -15.23 16 12 C 0.09 3.96 5.41 71.98 0.39 4.35 16 13 C 0.03 1.69 5.35 29.85 0.16 1.85 16 14 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.00 0.24 5.46 84.65 0.46 0.70 16 17 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 18 Si 0.98 43.78 29.54 68.60 2.03 45.81 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 N -0.47 -13.24 10.10 -183.90 -1.86 -15.09 16 23 C 0.16 3.21 10.78 85.13 0.92 4.12 16 24 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.19 1.98 7.73 -2.91 -0.02 1.96 16 28 H 0.18 2.97 7.63 -2.91 -0.02 2.94 16 29 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.20 2.94 7.62 -2.91 -0.02 2.92 16 Total: -1.00 -72.21 316.92 6.20 -66.01 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.12 Total: 0.53 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.08 Total: 8.92 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.57 Total: -70.99 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.46 Total: -50.28 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -72.21 6.20 -66.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899872696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.418 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds