Wall clock time and date at job start Tue Mar 31 2020 00:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45199 * 109.46704 * 2 1 4 4 C 1.34703 * 116.99896 * 180.02562 * 3 2 1 5 5 O 1.21459 * 119.99736 * 359.97438 * 4 3 2 6 6 C 1.47856 * 120.00392 * 180.02562 * 4 3 2 7 7 C 1.39971 * 120.45530 * 6.22465 * 6 4 3 8 8 C 1.38386 * 118.36006 * 179.70770 * 7 6 4 9 9 C 1.39434 * 119.18603 * 0.53769 * 8 7 6 10 10 C 1.48102 * 119.57049 * 179.72812 * 9 8 7 11 11 O 1.21460 * 120.00614 * 359.72924 * 10 9 8 12 12 O 1.34657 * 119.99761 * 179.72499 * 10 9 8 13 13 C 1.34762 * 117.00305 * 179.97438 * 12 10 9 14 14 H 1.08005 * 119.99413 * 0.02562 * 13 12 10 15 15 C 1.38937 * 120.00247 * 180.02562 * 13 12 10 16 16 N 1.31324 * 119.99997 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99742 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47346 * 60.00558 * 17 15 13 19 19 H 1.48504 * 109.47020 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47413 * 300.00261 * 17 15 13 21 21 N 1.32809 * 120.85182 * 359.45050 * 9 8 7 22 22 C 1.31383 * 121.79580 * 0.27691 * 21 9 8 23 23 C 1.50708 * 119.63981 * 179.97438 * 22 21 9 24 24 H 1.08997 * 109.47500 * 300.00006 * 1 2 3 25 25 H 1.08999 * 109.47059 * 60.00461 * 1 2 3 26 26 H 1.09003 * 109.46632 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47500 * 239.99994 * 2 1 3 28 28 H 1.08999 * 109.47059 * 119.99539 * 2 1 3 29 29 H 1.07997 * 120.81914 * 359.97438 * 7 6 4 30 30 H 1.07994 * 120.40809 * 180.26309 * 8 7 6 31 31 H 0.96999 * 119.99990 * 180.02562 * 16 15 13 32 32 H 1.08993 * 109.47151 * 96.57983 * 23 22 21 33 33 H 1.08998 * 109.46948 * 216.58306 * 23 22 21 34 34 H 1.08999 * 109.46372 * 336.58231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0893 0.5823 -0.0005 6 6 3.9145 2.9118 0.0000 7 6 3.0774 4.0258 0.1319 8 6 3.6531 5.2843 0.1330 9 6 5.0355 5.3997 -0.0075 10 6 5.6599 6.7426 -0.0135 11 8 4.9681 7.7347 0.0986 12 8 6.9947 6.8639 -0.1432 13 6 7.4987 8.1137 -0.1415 14 1 6.8381 8.9620 -0.0387 15 6 8.8677 8.3110 -0.2720 16 7 9.6708 7.2795 -0.3974 17 14 9.5660 10.0436 -0.2703 18 1 9.2278 10.7124 1.0117 19 1 11.0420 9.9825 -0.4218 20 1 8.9835 10.8131 -1.3988 21 7 5.8000 4.3207 -0.1306 22 6 5.2923 3.1089 -0.1309 23 6 6.2052 1.9184 -0.2743 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0090 3.9060 0.2346 30 1 3.0387 6.1663 0.2371 31 1 10.6266 7.4172 -0.4882 32 1 6.4353 1.5161 0.7122 33 1 5.7122 1.1526 -0.8731 34 1 7.1283 2.2257 -0.7657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915042726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:24 Heat of formation + Delta-G solvation = -125.396964 kcal Electronic energy + Delta-G solvation = -20799.457107 eV Core-core repulsion = 17277.423477 eV Total energy + Delta-G solvation = -3522.033630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93350 -39.78226 -38.61271 -36.77333 -35.31687 -33.04403 -32.55553 -32.31384 -31.68482 -27.77441 -26.48795 -24.93617 -23.51018 -22.12008 -21.66843 -20.38579 -18.11282 -17.85727 -17.46087 -16.85458 -16.74018 -15.92656 -15.15102 -14.99528 -14.46011 -14.41580 -14.26182 -13.75722 -13.63779 -13.15755 -13.08905 -12.92844 -12.39252 -12.22592 -12.13069 -11.95706 -11.80803 -11.68365 -11.29331 -10.74915 -10.54905 -10.53631 -10.29331 -9.99271 -9.81475 -9.58373 -9.07108 -8.90707 -8.73033 -6.60630 -4.17671 0.32978 1.35781 2.33617 2.44449 3.06696 3.10298 3.15143 3.35445 3.72242 4.16021 4.19426 4.49267 4.53216 4.64899 4.70443 4.74729 4.97714 5.02513 5.04509 5.23991 5.41129 5.47439 5.65701 5.73867 5.77708 5.87560 5.92035 6.10097 6.19439 6.37131 6.54556 6.81055 7.20851 7.63519 7.75017 8.04204 8.56379 8.84446 9.70384 10.54643 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040534 B = 0.003531 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.619948 B = 7927.969897 C = 8589.091533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.519 3.481 5 O -0.499 6.499 6 C -0.193 4.193 7 C -0.021 4.021 8 C -0.151 4.151 9 C 0.176 3.824 10 C 0.419 3.581 11 O -0.551 6.551 12 O -0.171 6.171 13 C -0.368 4.368 14 H 0.102 0.898 15 C 0.042 3.958 16 N -0.834 5.834 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.266 1.266 21 N -0.445 5.445 22 C 0.195 3.805 23 C -0.111 4.111 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.276 0.724 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 -12.595 0.479 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.364 3.636 5 O -0.389 6.389 6 C -0.196 4.196 7 C -0.047 4.047 8 C -0.171 4.171 9 C 0.039 3.961 10 C 0.267 3.733 11 O -0.450 6.450 12 O -0.075 6.075 13 C -0.444 4.444 14 H 0.120 0.880 15 C -0.166 4.166 16 N -0.468 5.468 17 Si 0.774 3.226 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.191 1.191 21 N -0.157 5.157 22 C 0.054 3.946 23 C -0.167 4.167 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.525 -12.564 0.390 17.745 hybrid contribution -0.572 0.552 0.122 0.804 sum -13.098 -12.012 0.512 17.779 Atomic orbital electron populations 1.21814 0.92592 1.02966 1.03631 1.23035 0.95308 0.79997 1.02736 1.86540 1.23897 1.32442 1.84401 1.20920 0.80426 0.89463 0.72808 1.90787 1.59687 1.42529 1.45890 1.20006 0.95078 0.90949 1.13611 1.21762 1.00486 0.90729 0.91695 1.22018 0.94797 0.98743 1.01529 1.20872 0.90362 0.91699 0.93175 1.20175 0.83156 0.86841 0.83084 1.90646 1.63658 1.37768 1.52949 1.83963 1.19523 1.32920 1.71058 1.21518 0.91546 0.81845 1.49491 0.88019 1.25552 0.94819 1.00420 0.95789 1.69975 1.04775 1.30658 1.41399 0.85639 0.77775 0.79586 0.79647 1.19119 1.20081 1.19112 1.67956 1.38622 0.97325 1.11828 1.21599 0.89980 0.93606 0.89423 1.21073 0.98573 0.93224 1.03877 0.91407 0.91404 0.90224 0.91098 0.91104 0.83081 0.82722 0.91368 0.89781 0.88590 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.09 9.56 -40.50 -0.39 -4.48 16 4 C 0.52 7.14 7.83 34.67 0.27 7.42 16 5 O -0.50 -7.45 13.15 -19.23 -0.25 -7.70 16 6 C -0.19 -2.93 5.90 -104.73 -0.62 -3.55 16 7 C -0.02 -0.30 9.73 -38.88 -0.38 -0.68 16 8 C -0.15 -2.55 9.62 -39.08 -0.38 -2.92 16 9 C 0.18 3.78 6.75 -82.95 -0.56 3.22 16 10 C 0.42 10.93 7.89 34.78 0.27 11.21 16 11 O -0.55 -14.82 15.55 -19.24 -0.30 -15.12 16 12 O -0.17 -5.05 9.55 -21.17 -0.20 -5.25 16 13 C -0.37 -10.76 9.65 30.99 0.30 -10.46 16 14 H 0.10 2.93 6.86 -52.48 -0.36 2.57 16 15 C 0.04 1.16 5.50 -17.51 -0.10 1.06 16 16 N -0.83 -23.99 13.66 55.49 0.76 -23.23 16 17 Si 0.95 20.53 29.55 -169.99 -5.02 15.51 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 N -0.45 -9.51 10.01 -5.76 -0.06 -9.57 16 22 C 0.20 3.44 6.82 -82.20 -0.56 2.88 16 23 C -0.11 -1.69 8.87 36.01 0.32 -1.37 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.15 1.57 7.71 -52.49 -0.40 1.17 16 30 H 0.16 2.41 7.63 -52.49 -0.40 2.01 16 31 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 1.38 5.85 -51.93 -0.30 1.08 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -33.19 310.72 -5.15 -38.34 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.56 Total: -0.23 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.81 Total: 7.05 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.70 Total: -32.80 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.14 Total: -32.55 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.19 -5.15 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915042726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.055 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds