Wall clock time and date at job start Tue Mar 31 2020 01:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46508 * 114.26871 * 139.79107 * 11 10 9 13 13 C 1.34773 * 120.00084 * 111.47574 * 12 11 10 14 14 O 1.21690 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.46768 * 120.00049 * 180.02562 * 13 12 11 16 16 C 1.36057 * 125.65621 * 179.97438 * 15 13 12 17 17 C 1.41730 * 106.62995 * 179.97438 * 16 15 13 18 18 C 1.47489 * 126.77659 * 180.02562 * 17 16 15 19 19 N 1.34778 * 119.99953 * 180.02562 * 18 17 16 20 20 O 1.21600 * 120.00168 * 0.02562 * 18 17 16 21 21 C 1.37808 * 106.45053 * 0.02562 * 17 16 15 22 22 O 1.33500 * 108.34268 * 359.76471 * 21 17 16 23 23 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 24 24 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 25 25 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 26 26 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 27 27 H 1.09001 * 114.39615 * 272.67170 * 11 10 9 28 28 H 0.96994 * 119.99447 * 291.47492 * 12 11 10 29 29 H 1.08008 * 126.68753 * 359.97242 * 16 15 13 30 30 H 0.97001 * 119.99682 * 0.02562 * 19 18 17 31 31 H 0.96992 * 120.00316 * 180.02562 * 19 18 17 32 32 H 1.07996 * 125.83052 * 180.02562 * 21 17 16 33 33 H 1.09008 * 113.47329 * 321.86486 * 23 9 7 34 34 H 1.09003 * 113.47086 * 92.30805 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 6.5600 -1.3345 1.2775 13 6 7.3263 -1.1434 2.3696 14 8 6.8094 -1.0551 3.4678 15 6 8.7841 -1.0406 2.2344 16 6 9.6636 -0.8482 3.2545 17 6 10.9562 -0.8122 2.6742 18 6 12.2368 -0.6249 3.3816 19 7 13.3933 -0.6125 2.6897 20 8 12.2491 -0.4816 4.5891 21 6 10.7804 -0.9866 1.3186 22 8 9.4745 -1.1259 1.0788 23 6 4.4217 -2.2228 0.2849 24 1 -0.4850 -0.8367 -0.0745 25 1 4.8718 0.2629 0.0181 26 1 3.9267 0.4295 1.5592 27 1 4.7840 -1.7220 2.4143 28 1 6.9719 -1.4045 0.4022 29 1 9.4236 -0.7434 4.3023 30 1 13.3834 -0.7264 1.7265 31 1 14.2355 -0.4897 3.1549 32 1 11.5654 -1.0111 0.5773 33 1 4.0970 -3.2190 0.5854 34 1 4.9881 -2.2265 -0.6465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030939062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:47 Heat of formation + Delta-G solvation = 7.165039 kcal Electronic energy + Delta-G solvation = -20647.542348 eV Core-core repulsion = 17163.549789 eV Total energy + Delta-G solvation = -3483.992559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19542 -39.83200 -39.49899 -38.07092 -34.35978 -33.98010 -33.26748 -32.22436 -30.39490 -27.81077 -25.37799 -24.46555 -24.23372 -22.06865 -21.26114 -20.27459 -19.91522 -18.96053 -17.51704 -17.41191 -16.86970 -16.78151 -16.34448 -16.22355 -15.28145 -14.95083 -14.63247 -14.47149 -14.03601 -13.76669 -13.50215 -13.32451 -13.10905 -12.22767 -12.10876 -11.62757 -11.54999 -10.68933 -10.64144 -10.45457 -10.31812 -10.24916 -10.20749 -9.83262 -9.31122 -9.21020 -8.82414 -8.66982 -7.26951 -6.36089 -3.29641 0.59126 1.22696 2.18869 2.84189 2.89152 3.08376 3.20192 3.42189 3.46114 3.60806 4.04585 4.20499 4.52584 4.56461 4.77272 5.02310 5.06518 5.15747 5.30203 5.33234 5.65633 5.78956 5.83252 6.09023 6.21650 6.22498 6.26744 6.27981 6.32220 6.80930 6.87758 7.01957 7.45767 7.78475 8.04665 8.18911 8.91620 9.44189 10.27877 11.14072 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040435 B = 0.003242 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.295886 B = 8634.707946 C = 8717.971438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.020 4.020 3 Si 1.061 2.939 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.308 4.308 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.089 3.911 11 C 0.099 3.901 12 N -0.701 5.701 13 C 0.600 3.400 14 O -0.513 6.513 15 C -0.068 4.068 16 C -0.072 4.072 17 C -0.244 4.244 18 C 0.594 3.406 19 N -0.852 5.852 20 O -0.533 6.533 21 C 0.042 3.958 22 O -0.148 6.148 23 C 0.113 3.887 24 H 0.263 0.737 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.126 0.874 28 H 0.404 0.596 29 H 0.172 0.828 30 H 0.399 0.601 31 H 0.408 0.592 32 H 0.219 0.781 33 H 0.054 0.946 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.149 -2.772 -0.786 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.220 4.220 3 Si 0.893 3.107 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.221 1.221 7 C -0.434 4.434 8 H 0.102 0.898 9 N -0.344 5.344 10 C -0.038 4.038 11 C -0.006 4.006 12 N -0.351 5.351 13 C 0.384 3.616 14 O -0.390 6.390 15 C -0.120 4.120 16 C -0.093 4.093 17 C -0.248 4.248 18 C 0.379 3.621 19 N -0.416 5.416 20 O -0.410 6.410 21 C -0.032 4.032 22 O -0.042 6.042 23 C -0.015 4.015 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.239 0.761 29 H 0.189 0.811 30 H 0.227 0.773 31 H 0.239 0.761 32 H 0.235 0.765 33 H 0.072 0.928 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 26.887 -1.052 0.496 26.912 hybrid contribution 1.001 -1.645 -0.976 2.159 sum 27.888 -2.698 -0.480 28.022 Atomic orbital electron populations 1.70901 1.05388 1.29689 1.50887 1.25802 0.96467 1.00966 0.98769 0.83785 0.74450 0.75825 0.76685 1.21852 1.20891 1.22132 1.20097 0.79982 0.96126 1.47218 0.89792 1.45888 1.03632 1.07954 1.76974 1.23169 0.90152 0.94090 0.96346 1.23627 0.75775 0.99548 1.01648 1.45932 1.08158 1.71735 1.09245 1.16561 0.82262 0.77476 0.85263 1.90924 1.71659 1.50694 1.25765 1.22220 0.93307 1.13139 0.83326 1.21872 0.89290 0.97170 1.01004 1.20621 0.95083 1.15443 0.93699 1.17236 0.82902 0.75501 0.86426 1.43653 1.08796 1.77316 1.11825 1.90870 1.87167 1.49091 1.13828 1.25011 0.83742 0.98107 0.96317 1.83956 1.18034 1.68252 1.33911 1.22673 0.89276 0.94983 0.94546 0.92712 0.93398 0.92360 0.85594 0.76112 0.81058 0.77260 0.76099 0.76494 0.92781 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.70 55.49 0.76 -28.41 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 3 Si 1.06 26.61 25.50 -169.99 -4.34 22.28 16 4 H -0.29 -7.12 6.97 56.52 0.39 -6.72 16 5 H -0.28 -6.50 5.66 56.52 0.32 -6.18 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.31 -8.80 11.03 -15.06 -0.17 -8.96 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 9 N -0.62 -14.91 3.62 -184.65 -0.67 -15.58 16 10 C 0.09 1.87 5.43 -8.39 -0.05 1.83 16 11 C 0.10 1.73 4.62 -67.68 -0.31 1.41 16 12 N -0.70 -9.71 5.39 -54.76 -0.30 -10.00 16 13 C 0.60 8.79 7.79 -12.82 -0.10 8.69 16 14 O -0.51 -9.36 16.44 5.20 0.09 -9.27 16 15 C -0.07 -0.80 7.09 -36.92 -0.26 -1.06 16 16 C -0.07 -0.85 10.41 -39.03 -0.41 -1.25 16 17 C -0.24 -2.18 6.16 -104.95 -0.65 -2.82 16 18 C 0.59 5.47 8.09 -12.49 -0.10 5.37 16 19 N -0.85 -3.42 8.86 30.45 0.27 -3.15 16 20 O -0.53 -7.44 17.77 5.28 0.09 -7.34 16 21 C 0.04 0.24 11.64 30.58 0.36 0.60 16 22 O -0.15 -1.29 10.33 6.17 0.06 -1.23 16 23 C 0.11 2.09 8.44 -8.52 -0.07 2.02 16 24 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 25 H 0.05 0.96 7.02 -51.93 -0.36 0.60 16 26 H 0.06 1.30 6.22 -51.93 -0.32 0.98 16 27 H 0.13 2.36 7.45 -51.93 -0.39 1.97 16 28 H 0.40 4.47 8.49 -40.82 -0.35 4.13 16 29 H 0.17 2.14 8.06 -52.48 -0.42 1.72 16 30 H 0.40 0.16 7.77 -40.82 -0.32 -0.15 16 31 H 0.41 1.24 8.93 -40.82 -0.36 0.87 16 32 H 0.22 0.01 7.46 -52.49 -0.39 -0.38 16 33 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 34 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -37.86 302.04 -4.75 -42.62 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.43 Total: 0.44 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.85 Total: 5.11 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.07 Total: -57.14 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.24 Total: -17.85 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.34 Total: 22.28 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.86 -4.75 -42.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030939062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.780 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds