Wall clock time and date at job start Tue Mar 31 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48508 * 109.46976 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.47576 * 29.99530 * 3 2 1 6 6 H 1.48495 * 109.47491 * 150.00135 * 3 2 1 7 7 C 1.38949 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00316 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99887 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99607 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46950 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99968 * 179.97438 * 13 12 10 15 15 O 1.21610 * 120.00228 * 359.73130 * 14 13 12 16 16 C 1.47426 * 119.99872 * 180.02562 * 14 13 12 17 17 N 1.36064 * 126.44821 * 359.41438 * 16 14 13 18 18 C 1.29931 * 108.47762 * 179.82217 * 17 16 14 19 19 O 1.34051 * 109.24097 * 0.44904 * 18 17 16 20 20 C 1.34253 * 108.22744 * 359.71710 * 19 18 17 21 21 C 1.50702 * 126.52366 * 180.02562 * 20 19 18 22 22 C 1.52995 * 117.50099 * 8.74914 * 21 20 19 23 23 C 1.52999 * 117.50065 * 300.08662 * 21 20 19 24 24 H 0.97005 * 120.00033 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99743 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47406 * 60.00044 * 12 10 9 27 27 H 1.08993 * 109.47274 * 299.99671 * 12 10 9 28 28 H 0.96998 * 119.99507 * 0.02562 * 13 12 10 29 29 H 1.08007 * 125.37840 * 180.16209 * 18 17 16 30 30 H 1.09005 * 115.54578 * 154.42053 * 21 20 19 31 31 H 1.09006 * 117.49694 * 359.97438 * 22 21 20 32 32 H 1.08999 * 117.49998 * 145.01804 * 22 21 20 33 33 H 1.09000 * 117.50012 * 214.98129 * 23 21 20 34 34 H 1.08999 * 117.49441 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4401 0.7000 7 6 2.0087 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3706 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 7.3740 -3.9981 0.0013 15 8 8.1643 -3.0738 -0.0045 16 6 7.8654 -5.3881 0.0013 17 7 7.1030 -6.5150 0.0129 18 6 7.8928 -7.5466 0.0049 19 8 9.1663 -7.1280 -0.0019 20 6 9.1670 -5.7855 -0.0043 21 6 10.3784 -4.8892 -0.0122 22 6 11.7430 -5.5476 -0.2246 23 6 11.3572 -5.0139 1.1572 24 1 -0.4850 0.8401 -0.0004 25 1 3.8648 -0.3633 0.0007 26 1 5.9240 -1.8567 0.8911 27 1 5.9240 -1.8568 -0.8889 28 1 5.4186 -4.4891 0.0016 29 1 7.5738 -8.5785 0.0083 30 1 10.2265 -3.8972 -0.4377 31 1 11.7646 -6.6293 -0.3582 32 1 12.4890 -4.9888 -0.7896 33 1 11.8495 -4.1041 1.5007 34 1 11.1245 -5.7439 1.9325 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117946971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:54 Heat of formation + Delta-G solvation = -45.914857 kcal Electronic energy + Delta-G solvation = -20659.030898 eV Core-core repulsion = 17172.736622 eV Total energy + Delta-G solvation = -3486.294276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.51278 -41.01078 -39.96031 -38.17866 -36.32595 -35.91168 -35.33039 -33.85476 -31.49077 -29.67387 -26.68140 -24.98568 -24.61589 -23.32693 -22.04222 -21.55336 -21.41559 -20.56267 -19.39145 -17.93468 -17.78286 -17.35473 -17.09578 -16.76521 -16.73450 -16.31306 -15.88703 -15.50344 -15.34699 -14.87263 -14.63185 -14.30655 -14.03553 -13.72739 -13.35175 -12.97808 -12.51909 -12.45756 -12.44496 -12.06519 -12.00443 -11.95253 -11.66338 -11.59590 -11.14921 -10.69451 -10.37792 -10.29933 -9.79890 -8.46547 -6.09139 -0.05461 1.01194 1.30754 1.33786 1.43477 1.45244 1.76459 1.92660 2.14068 2.20322 2.80863 2.84452 3.08288 3.09334 3.31751 3.68292 3.83541 3.96909 3.99685 4.12123 4.32954 4.36875 4.43586 4.63938 4.71369 4.93463 5.05776 5.13164 5.17734 5.20266 5.47084 5.86252 6.22677 6.47246 6.53637 6.76506 6.96261 7.26832 7.76558 8.70105 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033863 B = 0.003377 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.668291 B = 8288.486538 C = 9030.699642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.334 4.334 8 H 0.061 0.939 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.616 6.616 12 C 0.118 3.882 13 N -0.699 5.699 14 C 0.601 3.399 15 O -0.555 6.555 16 C -0.102 4.102 17 N -0.501 5.501 18 C 0.199 3.801 19 O -0.194 6.194 20 C 0.083 3.917 21 C -0.113 4.113 22 C -0.147 4.147 23 C -0.150 4.150 24 H 0.282 0.718 25 H 0.393 0.607 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.415 0.585 29 H 0.307 0.693 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.998 -9.654 0.409 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.154 1.154 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.501 6.501 12 C -0.009 4.009 13 N -0.351 5.351 14 C 0.388 3.612 15 O -0.435 6.435 16 C -0.221 4.221 17 N -0.230 5.230 18 C -0.029 4.029 19 O -0.081 6.081 20 C 0.025 3.975 21 C -0.132 4.132 22 C -0.184 4.184 23 C -0.187 4.187 24 H 0.091 0.909 25 H 0.229 0.771 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.253 0.747 29 H 0.322 0.678 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 25.243 -9.589 0.421 27.006 hybrid contribution -0.438 0.484 -0.027 0.653 sum 24.805 -9.105 0.394 26.426 Atomic orbital electron populations 1.69783 1.08112 1.29544 1.49138 1.26099 0.96455 1.02688 0.95561 0.85414 0.79590 0.76767 0.80150 1.17968 1.19734 1.15446 1.19034 0.80965 0.95297 1.50964 0.92078 1.41888 1.06114 1.07308 1.66191 1.20494 0.90050 0.83931 0.82535 1.90548 1.70752 1.32493 1.56346 1.20990 0.89751 0.84450 1.05737 1.45568 1.07083 1.09189 1.73301 1.16876 0.81815 0.86416 0.76098 1.90729 1.55588 1.44645 1.52539 1.21204 0.91032 0.93622 1.16200 1.70786 1.35587 0.98229 1.18357 1.29182 0.74421 1.01931 0.97406 1.84362 1.33798 1.20344 1.69559 1.22844 0.95992 0.80908 0.97715 1.20807 0.85281 0.97951 1.09133 1.23230 0.94213 1.01807 0.99145 1.23207 0.99368 1.04515 0.91620 0.90850 0.77070 0.87116 0.87003 0.74727 0.67834 0.84078 0.87457 0.85627 0.86000 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.96 21.66 0.30 -54.73 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 3 Si 0.96 38.29 27.74 68.60 1.90 40.19 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 7 C -0.33 -19.33 10.16 84.04 0.85 -18.47 16 8 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 9 N -0.57 -27.05 5.09 -306.99 -1.56 -28.62 16 10 C 0.44 20.21 7.85 87.66 0.69 20.89 16 11 O -0.62 -33.70 15.24 -3.05 -0.05 -33.75 16 12 C 0.12 4.07 6.15 85.63 0.53 4.60 16 13 N -0.70 -24.84 5.52 -470.10 -2.60 -27.43 16 14 C 0.60 20.05 7.81 86.66 0.68 20.73 16 15 O -0.56 -19.08 14.88 -4.06 -0.06 -19.14 16 16 C -0.10 -3.00 6.99 40.41 0.28 -2.71 16 17 N -0.50 -13.53 11.06 -305.15 -3.37 -16.90 16 18 C 0.20 3.33 13.19 130.52 1.72 5.05 16 19 O -0.19 -3.58 10.50 0.41 0.00 -3.57 16 20 C 0.08 1.94 6.90 25.19 0.17 2.11 16 21 C -0.11 -2.18 5.61 -11.54 -0.06 -2.24 16 22 C -0.15 -1.76 10.18 30.62 0.31 -1.45 16 23 C -0.15 -2.06 10.24 30.62 0.31 -1.75 16 24 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 25 H 0.39 15.34 5.76 -92.71 -0.53 14.80 16 26 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.41 16.04 7.17 -92.71 -0.66 15.37 16 29 H 0.31 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.14 3.15 6.66 -2.38 -0.02 3.13 16 31 H 0.11 1.16 8.01 -2.38 -0.02 1.14 16 32 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -79.05 307.36 0.44 -78.61 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.08 Total: 38.55 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 5.95 Total: 26.78 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -7.23 Total: -127.68 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -0.10 Total: -56.46 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -79.05 0.44 -78.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117946971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.700 kcal (2) G-P(sol) polarization free energy of solvation -79.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds