Wall clock time and date at job start Tue Mar 31 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99771 * 2 1 4 4 C 1.50699 * 109.47140 * 293.95489 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46898 * 111.00161 * 123.95199 * 2 1 3 13 13 C 1.50700 * 109.47068 * 66.05192 * 12 2 1 14 14 C 1.36049 * 119.81969 * 260.00083 * 13 12 2 15 15 N 1.34331 * 121.77972 * 179.97438 * 14 13 12 16 16 H 0.97001 * 119.64720 * 179.97438 * 15 14 13 17 17 C 1.37289 * 120.71531 * 359.97438 * 15 14 13 18 18 N 1.32265 * 133.59633 * 179.97438 * 17 15 14 19 19 C 1.33402 * 110.64954 * 180.02562 * 18 17 15 20 20 C 1.35946 * 109.82562 * 359.97438 * 19 18 17 21 21 C 1.41282 * 106.31457 * 0.02562 * 20 19 18 22 22 C 1.39267 * 119.82040 * 79.72373 * 13 12 2 23 23 Cl 1.73596 * 120.63943 * 359.97438 * 22 13 12 24 24 H 1.08997 * 109.47293 * 60.00221 * 1 2 3 25 25 H 1.09000 * 109.46769 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47106 * 299.99134 * 1 2 3 27 27 H 1.09004 * 109.47040 * 53.95427 * 3 2 1 28 28 H 1.09000 * 109.47033 * 173.95379 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47244 * 186.04995 * 12 2 1 31 31 H 1.08994 * 109.47665 * 306.05094 * 12 2 1 32 32 H 1.07997 * 119.10847 * 0.02562 * 14 13 12 33 33 H 1.08004 * 125.08220 * 180.02562 * 19 18 17 34 34 H 1.08008 * 126.84238 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0275 3.3492 -1.5288 7 7 2.7127 4.0017 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.8143 3.2446 -3.9908 10 1 0.7559 5.3886 -2.8584 11 1 2.8239 4.5936 -3.8443 12 6 1.9954 -0.7659 1.1376 13 6 1.6371 -2.2204 0.9728 14 6 0.5795 -2.7380 1.6545 15 7 0.2250 -4.0283 1.5367 16 1 -0.5344 -4.3649 2.0376 17 6 0.9260 -4.8759 0.7151 18 7 0.8073 -6.1580 0.4125 19 6 1.7521 -6.5262 -0.4544 20 6 2.5423 -5.4616 -0.7549 21 6 2.0366 -4.3703 -0.0137 22 6 2.3867 -3.0260 0.1192 23 17 3.7327 -2.3712 -0.7601 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.5610 1.9274 0.8310 28 1 3.0797 1.3445 0.1082 29 1 2.9879 4.9175 -0.7776 30 1 3.0798 -0.6610 1.1756 31 1 1.5611 -0.3873 2.0628 32 1 0.0091 -2.0939 2.3072 33 1 1.8709 -7.5210 -0.8577 34 1 3.3881 -5.4519 -1.4265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138929858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:49 Heat of formation + Delta-G solvation = 89.150867 kcal Electronic energy + Delta-G solvation = -19029.639976 eV Core-core repulsion = 15989.911754 eV Total energy + Delta-G solvation = -3039.728222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69909 -38.58563 -36.92059 -36.39673 -33.63462 -32.40804 -30.20311 -28.72212 -27.20988 -26.64865 -24.25290 -23.84837 -21.90014 -20.84712 -19.93700 -17.71595 -17.47356 -16.49406 -16.37952 -15.55070 -15.20017 -14.81545 -14.38175 -14.03487 -13.75114 -13.36367 -12.83841 -12.47297 -12.31703 -12.09916 -12.03978 -11.92910 -11.51500 -11.18468 -10.98978 -10.78445 -10.67648 -10.54715 -9.98125 -9.82479 -9.44419 -9.27349 -8.48605 -8.16721 -7.63820 -7.36395 -6.07432 -4.08413 0.03794 1.41713 2.09059 2.30924 3.28329 3.34549 3.36529 3.41347 3.52924 4.13494 4.39069 4.56102 4.66487 4.77334 5.02617 5.23211 5.29834 5.41301 5.52183 5.78269 5.92648 5.99291 6.05573 6.08228 6.21376 6.35455 6.53559 6.62115 6.84087 7.17768 7.19406 7.22635 7.73115 7.98812 8.08978 8.12511 8.45230 8.99267 9.56203 11.03417 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.004506 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.043416 B = 6212.197682 C = 6555.145358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.195 3.805 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.103 3.897 13 C -0.166 4.166 14 C 0.163 3.837 15 N -0.498 5.498 16 H 0.424 0.576 17 C 0.253 3.747 18 N -0.545 5.545 19 C 0.053 3.947 20 C -0.233 4.233 21 C -0.168 4.168 22 C 0.142 3.858 23 Cl -0.016 7.016 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.013 0.987 27 H -0.008 1.008 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -13.942 6.282 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.255 5.255 3 C 0.071 3.929 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.026 4.026 13 C -0.173 4.173 14 C 0.021 3.979 15 N -0.092 5.092 16 H 0.261 0.739 17 C 0.006 3.994 18 N -0.266 5.266 19 C -0.091 4.091 20 C -0.256 4.256 21 C -0.176 4.176 22 C 0.107 3.893 23 Cl 0.014 6.986 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.010 0.990 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.502 -14.689 6.113 16.291 hybrid contribution -0.032 1.460 -0.365 1.505 sum -3.534 -13.229 5.748 14.850 Atomic orbital electron populations 1.22245 0.89017 0.98814 1.01192 1.62143 1.06808 1.17957 1.38626 1.19748 0.95543 0.80862 0.96795 1.21168 1.34775 0.96811 1.01638 0.91793 1.24963 0.95273 0.97359 0.96911 1.69958 1.38410 1.11460 1.34004 0.86473 0.78209 0.79317 0.83633 1.19653 1.21145 1.20997 1.20857 1.01512 0.86419 0.93791 1.19227 0.97933 0.98457 1.01701 1.21831 0.95607 0.82932 0.97485 1.40507 1.26750 1.07361 1.34559 0.73908 1.19135 0.93154 0.91590 0.95475 1.69652 1.28125 1.08282 1.20579 1.22266 0.92260 0.98637 0.95958 1.21342 1.05155 0.92203 1.06924 1.19047 1.00398 0.92915 1.05269 1.21436 0.88176 0.90997 0.88693 1.98437 1.41752 1.85597 1.72792 0.90552 0.94187 0.96807 0.98981 0.94973 0.92968 0.89367 0.94292 0.79958 0.82398 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.11 60.06 0.55 1.16 16 2 N -0.53 -10.22 4.74 -245.83 -1.17 -11.39 16 3 C 0.20 4.70 4.72 -4.97 -0.02 4.68 16 4 C -0.51 -13.55 8.51 -34.44 -0.29 -13.84 16 5 H 0.06 1.72 7.10 -52.48 -0.37 1.35 16 6 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.10 1.57 4.52 -4.98 -0.02 1.55 16 13 C -0.17 -2.19 4.56 -105.03 -0.48 -2.67 16 14 C 0.16 1.54 9.63 -17.24 -0.17 1.38 16 15 N -0.50 -4.90 5.29 -12.09 -0.06 -4.97 16 16 H 0.42 2.66 8.91 -40.82 -0.36 2.30 16 17 C 0.25 3.62 8.46 -155.62 -1.32 2.31 16 18 N -0.55 -8.54 11.20 -12.30 -0.14 -8.68 16 19 C 0.05 0.78 11.78 -17.69 -0.21 0.57 16 20 C -0.23 -3.50 10.93 -39.25 -0.43 -3.93 16 21 C -0.17 -2.59 6.11 -106.76 -0.65 -3.24 16 22 C 0.14 2.14 6.40 -38.71 -0.25 1.89 16 23 Cl -0.02 -0.25 27.60 -51.86 -1.43 -1.68 16 24 H 0.08 1.47 6.86 -51.93 -0.36 1.11 16 25 H 0.04 0.57 6.41 -51.93 -0.33 0.24 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 28 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.09 1.41 7.20 -51.93 -0.37 1.04 16 31 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 32 H 0.18 0.98 7.97 -52.49 -0.42 0.57 16 33 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -32.65 304.18 -9.75 -42.41 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.87 Total: -2.64 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -3.39 Total: -8.71 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.63 Total: -50.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.43 Total: -1.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.65 -9.75 -42.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138929858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.560 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds