Wall clock time and date at job start Tue Mar 31 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48511 * 109.46942 * 270.00335 * 3 2 1 5 5 H 1.48496 * 109.47216 * 29.99723 * 3 2 1 6 6 H 1.48499 * 109.47387 * 150.00273 * 3 2 1 7 7 C 1.37871 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47470 * 180.02562 * 9 7 2 11 11 O 1.21277 * 119.99685 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.47214 * 121.30416 * 180.02562 * 12 10 9 14 14 C 1.53233 * 107.79737 * 115.74360 * 13 12 10 15 15 C 1.50433 * 110.61963 * 47.78391 * 14 13 12 16 16 N 1.33135 * 118.27805 * 159.59154 * 15 14 13 17 17 C 1.32069 * 121.22570 * 178.75468 * 16 15 14 18 18 O 1.35451 * 119.17880 * 180.02562 * 17 16 15 19 19 N 1.32323 * 121.63760 * 0.02562 * 17 16 15 20 20 C 1.32633 * 120.40894 * 0.29972 * 19 17 16 21 21 O 1.35515 * 120.39101 * 179.97438 * 20 19 17 22 22 C 1.37405 * 122.90401 * 339.16942 * 15 14 13 23 23 C 1.46788 * 121.30179 * 359.97438 * 12 10 9 24 24 H 0.97002 * 119.99933 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46991 * 60.00496 * 9 7 2 26 26 H 1.09002 * 109.47478 * 300.00900 * 9 7 2 27 27 H 1.09005 * 109.74598 * 235.71786 * 13 12 10 28 28 H 1.09003 * 109.74456 * 356.38743 * 13 12 10 29 29 H 1.09002 * 109.83203 * 287.14898 * 14 13 12 30 30 H 1.08997 * 108.74818 * 167.72782 * 14 13 12 31 31 H 0.96703 * 113.99980 * 269.97370 * 18 17 16 32 32 H 0.96696 * 114.00022 * 90.00224 * 21 20 19 33 33 H 1.09005 * 109.45909 * 104.32045 * 23 12 10 34 34 H 1.08998 * 109.45511 * 344.35270 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4226 -3.4230 -0.0010 12 7 1.7809 -4.9153 -0.0011 13 6 2.7119 -6.0557 -0.0005 14 6 2.5161 -6.8195 1.3134 15 6 1.0540 -7.0590 1.5742 16 7 0.7148 -8.0332 2.4159 17 6 -0.5503 -8.2780 2.7056 18 8 -0.8484 -9.2791 3.5679 19 7 -1.5336 -7.5696 2.1745 20 6 -1.2697 -6.5877 1.3228 21 8 -2.2771 -5.8628 0.7787 22 6 0.0595 -6.3127 0.9895 23 6 0.3442 -5.2162 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.4977 -6.7063 -0.8485 28 1 3.7380 -5.6935 -0.0643 29 1 2.9390 -6.2482 2.1398 30 1 3.0295 -7.7782 1.2412 31 1 -0.9801 -10.1379 3.1433 32 1 -2.5221 -5.0817 1.2933 33 1 0.0409 -5.5390 -0.9970 34 1 -0.2139 -4.3221 0.2766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143196727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:29 Heat of formation + Delta-G solvation = -57.840851 kcal Electronic energy + Delta-G solvation = -21595.332538 eV Core-core repulsion = 18108.521113 eV Total energy + Delta-G solvation = -3486.811426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72959 -39.30502 -38.37439 -37.34362 -35.86363 -33.65807 -33.05587 -31.51246 -31.22667 -28.83529 -25.96200 -25.08226 -23.59551 -23.20864 -21.69434 -19.59238 -19.08954 -18.36257 -17.74535 -16.67136 -16.26775 -15.95914 -15.75414 -15.43566 -15.05100 -14.50035 -14.35162 -13.88451 -13.74924 -13.09868 -12.90407 -12.66728 -12.43800 -12.25552 -12.10172 -11.84052 -11.52148 -11.27713 -11.04137 -10.82815 -10.69555 -10.49486 -10.02351 -9.49273 -9.37539 -9.20089 -8.80560 -8.50870 -8.37656 -6.13438 -4.13088 0.49429 0.69017 2.67952 3.07287 3.26618 3.30942 3.36837 3.44336 3.47200 3.57871 4.03257 4.41791 4.45432 4.62300 4.75899 4.95869 5.16348 5.23153 5.25643 5.45549 5.50429 5.61278 5.70447 5.84098 5.99062 6.11829 6.51643 6.75756 7.03953 7.13610 7.18378 7.19288 7.74393 7.78574 7.89712 8.23883 8.96676 9.02091 9.52554 10.98857 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025133 B = 0.004562 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.821029 B = 6135.796275 C = 6834.603260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.007 3.993 10 C 0.523 3.477 11 O -0.536 6.536 12 N -0.634 5.634 13 C 0.110 3.890 14 C -0.087 4.087 15 C 0.223 3.777 16 N -0.533 5.533 17 C 0.512 3.488 18 O -0.457 6.457 19 N -0.550 5.550 20 C 0.393 3.607 21 O -0.469 6.469 22 C -0.216 4.216 23 C 0.169 3.831 24 H 0.262 0.738 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.410 0.590 32 H 0.416 0.584 33 H 0.086 0.914 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -16.536 1.611 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.315 3.685 11 O -0.411 6.411 12 N -0.371 5.371 13 C -0.014 4.014 14 C -0.126 4.126 15 C 0.080 3.920 16 N -0.260 5.260 17 C 0.207 3.793 18 O -0.259 6.259 19 N -0.287 5.287 20 C 0.204 3.796 21 O -0.277 6.277 22 C -0.222 4.222 23 C 0.044 3.956 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.270 0.730 32 H 0.278 0.722 33 H 0.104 0.896 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.406 -16.983 2.270 17.302 hybrid contribution 0.028 1.233 -0.330 1.276 sum -2.378 -15.750 1.939 16.046 Atomic orbital electron populations 1.69938 1.06030 1.27042 1.50968 1.24986 0.94922 0.99492 0.95042 0.86428 0.79875 0.82570 0.78233 1.20547 1.21249 1.19647 1.21156 0.94291 0.89030 1.50406 0.90646 1.19280 0.94150 0.90451 0.99324 1.22080 0.91109 0.82613 0.72694 1.90544 1.17956 1.83656 1.48920 1.48471 1.05464 1.06339 1.76787 1.21593 0.96958 0.87827 0.95029 1.20946 0.88703 1.02613 1.00345 1.20971 0.96906 0.86482 0.87622 1.67984 1.20711 1.20352 1.17000 1.19739 0.83025 0.89705 0.86857 1.84736 1.90885 1.19334 1.30994 1.67441 1.39366 1.10084 1.11763 1.18933 0.85674 0.88264 0.86778 1.84689 1.52213 1.42015 1.48832 1.21612 0.93299 1.02731 1.04575 1.20139 0.82999 0.95976 0.96442 0.92827 0.93197 0.93548 0.91128 0.87646 0.88119 0.88108 0.73050 0.72243 0.89606 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 13.29 55.43 0.74 -24.49 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.20 8.92 -34.44 -0.31 -14.50 16 8 H 0.08 2.20 6.75 -52.49 -0.35 1.84 16 9 C 0.01 0.17 3.88 -29.03 -0.11 0.05 16 10 C 0.52 11.16 7.71 -10.99 -0.08 11.08 16 11 O -0.54 -13.09 14.94 5.56 0.08 -13.01 16 12 N -0.63 -10.27 2.93 -174.23 -0.51 -10.78 16 13 C 0.11 1.42 6.46 -3.53 -0.02 1.40 16 14 C -0.09 -1.03 6.15 -27.89 -0.17 -1.20 16 15 C 0.22 2.95 6.64 -82.46 -0.55 2.40 16 16 N -0.53 -7.29 10.33 -11.20 -0.12 -7.40 16 17 C 0.51 6.84 8.71 -91.46 -0.80 6.05 16 18 O -0.46 -4.97 13.64 -18.05 -0.25 -5.22 16 19 N -0.55 -7.66 10.50 -14.78 -0.16 -7.81 16 20 C 0.39 5.11 7.79 -16.64 -0.13 4.98 16 21 O -0.47 -5.18 12.89 -18.24 -0.24 -5.42 16 22 C -0.22 -2.84 5.83 -104.46 -0.61 -3.45 16 23 C 0.17 2.31 5.67 -5.14 -0.03 2.28 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.05 1.19 8.11 -51.92 -0.42 0.77 16 26 H 0.05 1.11 7.58 -51.93 -0.39 0.72 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.11 1.48 7.07 -51.93 -0.37 1.11 16 29 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.41 2.14 9.06 45.56 0.41 2.55 16 32 H 0.42 2.92 9.06 45.56 0.41 3.33 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.11 1.58 6.10 -51.93 -0.32 1.26 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -34.87 297.20 -5.75 -40.62 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -1.85 Total: 2.02 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -2.91 Total: 10.55 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.05 Total: -50.48 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.40 Total: -23.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.87 -5.75 -40.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.219 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds